Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00795

Experiment: PDB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS00785 and HGI48_RS00790 are separated by 99 nucleotidesHGI48_RS00790 and HGI48_RS00795 overlap by 1 nucleotidesHGI48_RS00795 and HGI48_RS00800 are separated by 133 nucleotides HGI48_RS00785: HGI48_RS00785 - rhodanese-like domain-containing protein, at 179,966 to 180,397 _RS00785 HGI48_RS00790: HGI48_RS00790 - protein-export chaperone SecB, at 180,497 to 180,967 _RS00790 HGI48_RS00795: HGI48_RS00795 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 180,967 to 181,986 _RS00795 HGI48_RS00800: HGI48_RS00800 - serine O-acetyltransferase, at 182,120 to 182,941 _RS00800 Position (kb) 180 181 182Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 179.977 kb on + strandat 179.977 kb on + strandat 179.977 kb on + strandat 180.050 kb on - strand, within HGI48_RS00785at 180.112 kb on + strand, within HGI48_RS00785at 180.115 kb on + strand, within HGI48_RS00785at 180.172 kb on + strand, within HGI48_RS00785at 180.392 kb on - strandat 180.395 kb on + strandat 180.396 kb on - strandat 180.432 kb on + strandat 180.490 kb on - strandat 180.546 kb on - strand, within HGI48_RS00790at 180.556 kb on + strand, within HGI48_RS00790at 180.914 kb on + strand, within HGI48_RS00790at 180.914 kb on + strand, within HGI48_RS00790at 181.150 kb on - strand, within HGI48_RS00795at 181.356 kb on + strand, within HGI48_RS00795at 181.909 kb on + strandat 181.910 kb on - strandat 181.995 kb on + strandat 181.996 kb on - strandat 181.996 kb on - strandat 181.998 kb on + strandat 181.998 kb on + strandat 181.999 kb on - strandat 182.033 kb on + strandat 182.033 kb on + strandat 182.034 kb on - strandat 182.034 kb on - strandat 182.034 kb on - strandat 182.034 kb on - strandat 182.034 kb on - strandat 182.034 kb on - strandat 182.056 kb on + strandat 182.258 kb on + strand, within HGI48_RS00800at 182.259 kb on - strandat 182.259 kb on - strandat 182.272 kb on + strand, within HGI48_RS00800at 182.412 kb on - strand, within HGI48_RS00800at 182.752 kb on + strand, within HGI48_RS00800at 182.753 kb on - strand, within HGI48_RS00800at 182.760 kb on + strandat 182.761 kb on - strand, within HGI48_RS00800at 182.761 kb on - strand, within HGI48_RS00800at 182.894 kb on + strandat 182.942 kb on + strandat 182.943 kb on - strandat 182.943 kb on - strandat 182.943 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PDB
remove
179,977 + -1.9
179,977 + -1.6
179,977 + -0.4
180,050 - HGI48_RS00785 0.19 -3.6
180,112 + HGI48_RS00785 0.34 -1.0
180,115 + HGI48_RS00785 0.34 -0.6
180,172 + HGI48_RS00785 0.48 +0.7
180,392 - -2.0
180,395 + -2.4
180,396 - -1.3
180,432 + -0.7
180,490 - -1.3
180,546 - HGI48_RS00790 0.10 +1.0
180,556 + HGI48_RS00790 0.13 -0.6
180,914 + HGI48_RS00790 0.89 +0.3
180,914 + HGI48_RS00790 0.89 -2.3
181,150 - HGI48_RS00795 0.18 -0.9
181,356 + HGI48_RS00795 0.38 -1.6
181,909 + +0.4
181,910 - +0.3
181,995 + -0.1
181,996 - -1.3
181,996 - -0.4
181,998 + -3.0
181,998 + +0.3
181,999 - -1.1
182,033 + -0.6
182,033 + -0.1
182,034 - -0.4
182,034 - +1.4
182,034 - +0.1
182,034 - +2.7
182,034 - -0.9
182,034 - +0.7
182,056 + +0.7
182,258 + HGI48_RS00800 0.17 -3.0
182,259 - +0.7
182,259 - +0.1
182,272 + HGI48_RS00800 0.18 -0.0
182,412 - HGI48_RS00800 0.36 -1.3
182,752 + HGI48_RS00800 0.77 +1.4
182,753 - HGI48_RS00800 0.77 +1.4
182,760 + +1.3
182,761 - HGI48_RS00800 0.78 -0.9
182,761 - HGI48_RS00800 0.78 -2.1
182,894 + +0.7
182,942 + -0.1
182,943 - -0.9
182,943 - -1.0
182,943 - -0.5

Or see this region's nucleotide sequence