Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00290 and HGI48_RS00295 are separated by 119 nucleotides HGI48_RS00295 and HGI48_RS00300 are separated by 52 nucleotides HGI48_RS00300 and HGI48_RS00305 are separated by 78 nucleotides
HGI48_RS00290: HGI48_RS00290 - formate dehydrogenase accessory sulfurtransferase FdhD, at 75,270 to 76,124
_RS00290
HGI48_RS00295: HGI48_RS00295 - hypothetical protein, at 76,244 to 76,519
_RS00295
HGI48_RS00300: HGI48_RS00300 - aldehyde dehydrogenase, at 76,572 to 78,110
_RS00300
HGI48_RS00305: HGI48_RS00305 - xylulokinase, at 78,189 to 79,649
_RS00305
Position (kb) 76
77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 75.798 kb on + strand, within HGI48_RS00290 at 75.825 kb on - strand, within HGI48_RS00290 at 75.828 kb on + strand, within HGI48_RS00290 at 75.828 kb on + strand, within HGI48_RS00290 at 75.829 kb on - strand at 75.829 kb on - strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.850 kb on + strand, within HGI48_RS00290 at 75.851 kb on - strand at 75.851 kb on - strand, within HGI48_RS00290 at 75.851 kb on - strand, within HGI48_RS00290 at 75.851 kb on - strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.939 kb on + strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.940 kb on - strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.950 kb on + strand, within HGI48_RS00290 at 75.951 kb on - strand, within HGI48_RS00290 at 75.951 kb on - strand, within HGI48_RS00290 at 75.958 kb on + strand, within HGI48_RS00290 at 75.958 kb on + strand, within HGI48_RS00290 at 75.958 kb on + strand, within HGI48_RS00290 at 75.959 kb on - strand at 75.959 kb on - strand, within HGI48_RS00290 at 75.959 kb on - strand, within HGI48_RS00290 at 75.959 kb on - strand, within HGI48_RS00290 at 75.959 kb on - strand, within HGI48_RS00290 at 76.112 kb on + strand at 76.112 kb on + strand at 76.112 kb on + strand at 76.113 kb on - strand at 76.113 kb on - strand at 76.113 kb on - strand at 76.144 kb on + strand at 76.144 kb on + strand at 76.144 kb on + strand at 76.245 kb on + strand at 76.245 kb on + strand at 76.246 kb on - strand at 76.317 kb on + strand, within HGI48_RS00295 at 76.336 kb on + strand, within HGI48_RS00295 at 76.337 kb on - strand, within HGI48_RS00295 at 76.391 kb on - strand at 76.409 kb on - strand, within HGI48_RS00295 at 76.410 kb on + strand, within HGI48_RS00295 at 76.417 kb on + strand, within HGI48_RS00295 at 76.418 kb on - strand, within HGI48_RS00295 at 76.442 kb on - strand, within HGI48_RS00295 at 76.567 kb on + strand at 76.567 kb on + strand at 76.568 kb on - strand at 76.568 kb on - strand at 76.568 kb on - strand at 76.568 kb on - strand at 76.578 kb on - strand at 76.614 kb on + strand at 76.615 kb on - strand at 76.615 kb on - strand at 76.692 kb on + strand at 76.692 kb on + strand at 76.692 kb on + strand at 76.692 kb on + strand at 76.693 kb on - strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.695 kb on + strand at 76.696 kb on - strand at 76.696 kb on - strand at 76.982 kb on + strand, within HGI48_RS00300 at 76.983 kb on - strand, within HGI48_RS00300 at 77.072 kb on + strand, within HGI48_RS00300 at 77.072 kb on + strand, within HGI48_RS00300 at 77.073 kb on - strand, within HGI48_RS00300 at 77.207 kb on + strand, within HGI48_RS00300 at 77.208 kb on - strand, within HGI48_RS00300 at 77.396 kb on + strand, within HGI48_RS00300 at 77.397 kb on - strand, within HGI48_RS00300 at 77.492 kb on + strand at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.621 kb on - strand at 77.639 kb on + strand, within HGI48_RS00300 at 77.652 kb on + strand, within HGI48_RS00300 at 77.652 kb on + strand at 77.652 kb on + strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.736 kb on + strand, within HGI48_RS00300 at 77.736 kb on + strand, within HGI48_RS00300 at 77.737 kb on - strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand at 77.739 kb on + strand, within HGI48_RS00300 at 77.740 kb on - strand, within HGI48_RS00300 at 77.740 kb on - strand, within HGI48_RS00300 at 77.740 kb on - strand, within HGI48_RS00300 at 77.917 kb on - strand, within HGI48_RS00300 at 77.964 kb on + strand at 77.965 kb on - strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.051 kb on + strand at 78.081 kb on + strand at 78.082 kb on - strand at 78.082 kb on - strand at 78.108 kb on + strand at 78.160 kb on + strand at 78.160 kb on + strand at 78.161 kb on - strand at 78.161 kb on - strand at 78.250 kb on + strand at 78.250 kb on + strand at 78.649 kb on + strand, within HGI48_RS00305 at 78.649 kb on + strand, within HGI48_RS00305 at 78.874 kb on + strand, within HGI48_RS00305 at 78.874 kb on + strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.876 kb on + strand, within HGI48_RS00305 at 78.877 kb on - strand, within HGI48_RS00305 at 78.877 kb on - strand, within HGI48_RS00305 at 78.877 kb on - strand, within HGI48_RS00305 at 78.919 kb on + strand, within HGI48_RS00305 at 78.919 kb on + strand, within HGI48_RS00305 at 78.919 kb on + strand, within HGI48_RS00305 at 78.920 kb on - strand, within HGI48_RS00305 at 78.920 kb on - strand, within HGI48_RS00305 at 78.920 kb on - strand, within HGI48_RS00305 at 79.069 kb on - strand, within HGI48_RS00305
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 75,798 + HGI48_RS00290 0.62 +0.3 75,825 - HGI48_RS00290 0.65 +1.4 75,828 + HGI48_RS00290 0.65 -2.3 75,828 + HGI48_RS00290 0.65 -0.3 75,829 - -0.9 75,829 - HGI48_RS00290 0.65 -0.2 75,850 + HGI48_RS00290 0.68 +0.7 75,850 + HGI48_RS00290 0.68 -0.3 75,850 + HGI48_RS00290 0.68 -1.3 75,850 + HGI48_RS00290 0.68 -1.0 75,850 + HGI48_RS00290 0.68 +0.6 75,850 + HGI48_RS00290 0.68 +0.6 75,850 + HGI48_RS00290 0.68 +2.0 75,851 - -0.3 75,851 - HGI48_RS00290 0.68 +0.2 75,851 - HGI48_RS00290 0.68 -0.6 75,851 - HGI48_RS00290 0.68 +0.1 75,939 + HGI48_RS00290 0.78 +0.5 75,939 + HGI48_RS00290 0.78 +0.0 75,939 + HGI48_RS00290 0.78 -1.1 75,939 + HGI48_RS00290 0.78 +1.7 75,940 - HGI48_RS00290 0.78 +0.1 75,940 - HGI48_RS00290 0.78 +0.0 75,940 - HGI48_RS00290 0.78 -0.4 75,940 - HGI48_RS00290 0.78 -0.5 75,940 - HGI48_RS00290 0.78 +1.0 75,940 - HGI48_RS00290 0.78 +0.9 75,940 - HGI48_RS00290 0.78 -2.1 75,940 - HGI48_RS00290 0.78 -0.4 75,950 + HGI48_RS00290 0.80 +1.0 75,950 + HGI48_RS00290 0.80 +0.7 75,950 + HGI48_RS00290 0.80 +0.8 75,950 + HGI48_RS00290 0.80 +0.5 75,950 + HGI48_RS00290 0.80 +0.5 75,951 - HGI48_RS00290 0.80 +0.1 75,951 - HGI48_RS00290 0.80 +2.4 75,958 + HGI48_RS00290 0.80 -0.6 75,958 + HGI48_RS00290 0.80 +0.2 75,958 + HGI48_RS00290 0.80 -0.4 75,959 - +1.5 75,959 - HGI48_RS00290 0.81 -1.9 75,959 - HGI48_RS00290 0.81 -0.6 75,959 - HGI48_RS00290 0.81 -1.4 75,959 - HGI48_RS00290 0.81 -1.0 76,112 + +0.5 76,112 + -0.6 76,112 + -1.2 76,113 - -0.7 76,113 - -0.3 76,113 - -0.8 76,144 + -0.9 76,144 + -1.9 76,144 + -0.0 76,245 + -0.4 76,245 + +0.4 76,246 - +0.7 76,317 + HGI48_RS00295 0.26 -0.6 76,336 + HGI48_RS00295 0.33 +0.1 76,337 - HGI48_RS00295 0.34 -1.3 76,391 - -0.9 76,409 - HGI48_RS00295 0.60 +0.1 76,410 + HGI48_RS00295 0.60 +2.2 76,417 + HGI48_RS00295 0.63 -1.0 76,418 - HGI48_RS00295 0.63 +1.4 76,442 - HGI48_RS00295 0.72 +0.5 76,567 + +0.3 76,567 + +0.7 76,568 - +2.2 76,568 - -0.7 76,568 - -0.3 76,568 - -0.2 76,578 - -1.3 76,614 + -0.4 76,615 - +2.3 76,615 - -0.5 76,692 + +0.0 76,692 + -0.4 76,692 + +1.1 76,692 + -0.9 76,693 - -0.6 76,695 + -1.6 76,695 + -0.4 76,695 + +0.1 76,695 + -0.7 76,695 + +0.1 76,695 + +1.0 76,695 + -2.4 76,696 - -0.1 76,696 - -0.3 76,982 + HGI48_RS00300 0.27 +1.4 76,983 - HGI48_RS00300 0.27 -1.0 77,072 + HGI48_RS00300 0.32 +0.7 77,072 + HGI48_RS00300 0.32 -0.0 77,073 - HGI48_RS00300 0.33 +1.3 77,207 + HGI48_RS00300 0.41 -0.3 77,208 - HGI48_RS00300 0.41 -1.3 77,396 + HGI48_RS00300 0.54 +0.3 77,397 - HGI48_RS00300 0.54 -0.2 77,492 + +2.5 77,493 - HGI48_RS00300 0.60 +0.3 77,493 - HGI48_RS00300 0.60 -1.3 77,493 - HGI48_RS00300 0.60 -0.5 77,493 - HGI48_RS00300 0.60 -3.3 77,493 - HGI48_RS00300 0.60 -2.1 77,621 - +0.1 77,639 + HGI48_RS00300 0.69 -0.1 77,652 + HGI48_RS00300 0.70 -1.3 77,652 + +2.1 77,652 + HGI48_RS00300 0.70 +0.7 77,653 - HGI48_RS00300 0.70 +0.7 77,653 - HGI48_RS00300 0.70 +1.2 77,653 - HGI48_RS00300 0.70 -2.3 77,653 - HGI48_RS00300 0.70 -0.9 77,736 + HGI48_RS00300 0.76 -0.8 77,736 + HGI48_RS00300 0.76 +0.2 77,737 - HGI48_RS00300 0.76 +0.3 77,739 + HGI48_RS00300 0.76 +0.1 77,739 + HGI48_RS00300 0.76 +0.7 77,739 + HGI48_RS00300 0.76 -1.9 77,739 + HGI48_RS00300 0.76 -0.5 77,739 + +1.7 77,739 + HGI48_RS00300 0.76 -0.7 77,740 - HGI48_RS00300 0.76 +1.8 77,740 - HGI48_RS00300 0.76 -1.1 77,740 - HGI48_RS00300 0.76 -3.3 77,917 - HGI48_RS00300 0.87 +0.4 77,964 + +0.2 77,965 - -1.1 78,002 + -0.3 78,002 + +0.9 78,002 + -0.9 78,002 + -0.0 78,002 + -2.4 78,003 - +1.2 78,003 - +1.1 78,003 - -1.6 78,003 - -1.3 78,003 - -0.7 78,003 - -0.4 78,051 + -0.7 78,081 + +1.4 78,082 - -0.7 78,082 - -0.4 78,108 + -0.1 78,160 + -0.6 78,160 + -1.9 78,161 - +0.4 78,161 - -1.6 78,250 + +0.4 78,250 + -1.6 78,649 + HGI48_RS00305 0.31 -0.4 78,649 + HGI48_RS00305 0.31 +1.9 78,874 + HGI48_RS00305 0.47 -0.3 78,874 + HGI48_RS00305 0.47 -0.3 78,875 - HGI48_RS00305 0.47 +0.7 78,875 - HGI48_RS00305 0.47 +0.6 78,875 - HGI48_RS00305 0.47 -0.6 78,875 - HGI48_RS00305 0.47 -2.1 78,875 - HGI48_RS00305 0.47 -0.4 78,876 + HGI48_RS00305 0.47 +0.2 78,877 - HGI48_RS00305 0.47 +1.1 78,877 - HGI48_RS00305 0.47 -0.0 78,877 - HGI48_RS00305 0.47 -1.5 78,919 + HGI48_RS00305 0.50 -2.1 78,919 + HGI48_RS00305 0.50 +0.1 78,919 + HGI48_RS00305 0.50 -0.1 78,920 - HGI48_RS00305 0.50 -1.0 78,920 - HGI48_RS00305 0.50 +0.5 78,920 - HGI48_RS00305 0.50 -1.1 79,069 - HGI48_RS00305 0.60 -0.3
Or see this region's nucleotide sequence