Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00275 and HGI48_RS00280 are separated by 165 nucleotides HGI48_RS00280 and HGI48_RS00285 are separated by 266 nucleotides
HGI48_RS00275: HGI48_RS00275 - IS1182 family transposase, at 70,709 to 72,052
_RS00275
HGI48_RS00280: HGI48_RS00280 - methyl-accepting chemotaxis protein, at 72,218 to 74,104
_RS00280
HGI48_RS00285: HGI48_RS00285 - superoxide dismutase [Mn], at 74,371 to 74,997
_RS00285
Position (kb) 72
73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 71.622 kb on + strand, within HGI48_RS00275 at 72.226 kb on + strand at 72.226 kb on + strand at 72.227 kb on - strand at 72.227 kb on - strand at 72.227 kb on - strand at 72.227 kb on - strand at 72.228 kb on + strand at 72.228 kb on + strand at 72.228 kb on + strand at 72.228 kb on + strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.229 kb on - strand at 72.494 kb on + strand, within HGI48_RS00280 at 72.494 kb on + strand, within HGI48_RS00280 at 72.494 kb on + strand, within HGI48_RS00280 at 72.494 kb on + strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand, within HGI48_RS00280 at 72.495 kb on - strand at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.584 kb on - strand, within HGI48_RS00280 at 72.637 kb on + strand, within HGI48_RS00280 at 72.858 kb on - strand, within HGI48_RS00280 at 72.858 kb on - strand, within HGI48_RS00280 at 72.914 kb on + strand, within HGI48_RS00280 at 72.988 kb on + strand at 73.120 kb on + strand, within HGI48_RS00280 at 73.120 kb on + strand, within HGI48_RS00280 at 73.120 kb on + strand at 73.121 kb on - strand at 73.133 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand, within HGI48_RS00280 at 73.210 kb on + strand at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand, within HGI48_RS00280 at 73.211 kb on - strand at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.212 kb on + strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.213 kb on - strand, within HGI48_RS00280 at 73.393 kb on - strand, within HGI48_RS00280 at 73.405 kb on - strand, within HGI48_RS00280 at 73.405 kb on - strand, within HGI48_RS00280 at 73.412 kb on + strand, within HGI48_RS00280 at 73.425 kb on + strand, within HGI48_RS00280 at 73.426 kb on - strand, within HGI48_RS00280 at 73.426 kb on - strand, within HGI48_RS00280 at 73.438 kb on + strand, within HGI48_RS00280 at 73.438 kb on + strand, within HGI48_RS00280 at 73.439 kb on - strand, within HGI48_RS00280 at 73.489 kb on + strand, within HGI48_RS00280 at 73.619 kb on + strand, within HGI48_RS00280 at 73.619 kb on + strand, within HGI48_RS00280 at 73.619 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand, within HGI48_RS00280 at 73.740 kb on + strand at 73.741 kb on - strand at 73.741 kb on - strand, within HGI48_RS00280 at 73.741 kb on - strand, within HGI48_RS00280 at 73.741 kb on - strand, within HGI48_RS00280 at 73.741 kb on - strand, within HGI48_RS00280 at 73.759 kb on + strand, within HGI48_RS00280 at 73.783 kb on + strand, within HGI48_RS00280 at 73.783 kb on + strand, within HGI48_RS00280 at 73.823 kb on - strand, within HGI48_RS00280 at 73.861 kb on + strand, within HGI48_RS00280 at 73.862 kb on - strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.896 kb on + strand, within HGI48_RS00280 at 73.897 kb on - strand, within HGI48_RS00280 at 73.901 kb on + strand, within HGI48_RS00280 at 73.902 kb on - strand, within HGI48_RS00280 at 73.902 kb on - strand, within HGI48_RS00280 at 73.902 kb on - strand, within HGI48_RS00280 at 73.906 kb on + strand, within HGI48_RS00280 at 73.908 kb on + strand, within HGI48_RS00280 at 73.909 kb on - strand, within HGI48_RS00280 at 74.001 kb on + strand at 74.001 kb on + strand at 74.002 kb on - strand at 74.002 kb on - strand at 74.002 kb on - strand at 74.024 kb on - strand at 74.046 kb on - strand at 74.083 kb on + strand at 74.123 kb on - strand at 74.123 kb on - strand at 74.125 kb on + strand at 74.142 kb on + strand at 74.142 kb on + strand at 74.142 kb on + strand at 74.143 kb on - strand at 74.164 kb on - strand at 74.207 kb on + strand at 74.208 kb on - strand at 74.208 kb on - strand at 74.208 kb on - strand at 74.255 kb on + strand at 74.255 kb on + strand at 74.303 kb on + strand at 74.305 kb on + strand at 74.306 kb on - strand at 74.306 kb on - strand at 74.347 kb on + strand at 74.368 kb on + strand at 74.368 kb on + strand at 74.373 kb on - strand at 75.042 kb on + strand at 75.043 kb on - strand at 75.043 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 71,622 + HGI48_RS00275 0.68 -0.3 72,226 + +0.6 72,226 + +2.4 72,227 - -1.9 72,227 - -0.1 72,227 - +1.1 72,227 - -2.1 72,228 + +0.5 72,228 + +2.0 72,228 + -0.1 72,228 + +0.7 72,229 - -0.7 72,229 - -1.9 72,229 - +0.1 72,229 - +0.4 72,494 + HGI48_RS00280 0.15 +1.4 72,494 + HGI48_RS00280 0.15 +0.2 72,494 + HGI48_RS00280 0.15 -3.4 72,494 + HGI48_RS00280 0.15 +0.2 72,495 - HGI48_RS00280 0.15 +0.5 72,495 - +0.1 72,495 - HGI48_RS00280 0.15 -0.2 72,495 - HGI48_RS00280 0.15 -0.3 72,495 - HGI48_RS00280 0.15 -0.3 72,495 - HGI48_RS00280 0.15 -1.6 72,495 - -0.3 72,584 - HGI48_RS00280 0.19 -1.9 72,584 - HGI48_RS00280 0.19 -0.9 72,584 - HGI48_RS00280 0.19 -1.6 72,584 - HGI48_RS00280 0.19 -1.6 72,584 - HGI48_RS00280 0.19 -0.6 72,637 + HGI48_RS00280 0.22 -1.5 72,858 - HGI48_RS00280 0.34 -1.6 72,858 - HGI48_RS00280 0.34 -0.3 72,914 + HGI48_RS00280 0.37 +0.2 72,988 + +0.7 73,120 + HGI48_RS00280 0.48 -1.0 73,120 + HGI48_RS00280 0.48 +0.1 73,120 + +0.1 73,121 - -0.9 73,133 + HGI48_RS00280 0.48 +0.7 73,210 + HGI48_RS00280 0.53 +0.9 73,210 + HGI48_RS00280 0.53 +0.3 73,210 + HGI48_RS00280 0.53 +0.2 73,210 + -0.9 73,211 - HGI48_RS00280 0.53 -1.4 73,211 - HGI48_RS00280 0.53 +1.0 73,211 - HGI48_RS00280 0.53 +1.5 73,211 - HGI48_RS00280 0.53 -0.5 73,211 - -0.3 73,212 + HGI48_RS00280 0.53 -0.4 73,212 + HGI48_RS00280 0.53 -0.3 73,212 + +1.7 73,212 + HGI48_RS00280 0.53 -1.3 73,212 + HGI48_RS00280 0.53 +0.1 73,212 + HGI48_RS00280 0.53 -1.3 73,212 + HGI48_RS00280 0.53 -0.5 73,212 + HGI48_RS00280 0.53 +0.4 73,212 + HGI48_RS00280 0.53 +1.1 73,213 - HGI48_RS00280 0.53 +0.1 73,213 - HGI48_RS00280 0.53 -0.7 73,213 - HGI48_RS00280 0.53 -0.3 73,213 - HGI48_RS00280 0.53 -1.5 73,213 - HGI48_RS00280 0.53 +0.1 73,213 - HGI48_RS00280 0.53 -0.2 73,213 - HGI48_RS00280 0.53 -1.3 73,213 - HGI48_RS00280 0.53 +0.1 73,393 - HGI48_RS00280 0.62 +0.1 73,405 - HGI48_RS00280 0.63 -0.0 73,405 - HGI48_RS00280 0.63 +0.6 73,412 + HGI48_RS00280 0.63 +0.9 73,425 + HGI48_RS00280 0.64 +0.2 73,426 - HGI48_RS00280 0.64 -0.6 73,426 - HGI48_RS00280 0.64 -2.1 73,438 + HGI48_RS00280 0.65 +0.5 73,438 + HGI48_RS00280 0.65 +0.3 73,439 - HGI48_RS00280 0.65 +0.4 73,489 + HGI48_RS00280 0.67 -1.4 73,619 + HGI48_RS00280 0.74 +0.2 73,619 + HGI48_RS00280 0.74 -0.1 73,619 + HGI48_RS00280 0.74 +0.1 73,740 + HGI48_RS00280 0.81 -0.1 73,740 + HGI48_RS00280 0.81 +1.6 73,740 + HGI48_RS00280 0.81 -0.8 73,740 + HGI48_RS00280 0.81 -1.6 73,740 + HGI48_RS00280 0.81 +0.7 73,740 + +1.7 73,741 - +0.7 73,741 - HGI48_RS00280 0.81 -0.6 73,741 - HGI48_RS00280 0.81 +0.6 73,741 - HGI48_RS00280 0.81 +0.4 73,741 - HGI48_RS00280 0.81 -0.9 73,759 + HGI48_RS00280 0.82 -0.9 73,783 + HGI48_RS00280 0.83 -0.8 73,783 + HGI48_RS00280 0.83 -0.0 73,823 - HGI48_RS00280 0.85 +2.1 73,861 + HGI48_RS00280 0.87 +0.1 73,862 - HGI48_RS00280 0.87 +0.9 73,896 + HGI48_RS00280 0.89 +2.0 73,896 + HGI48_RS00280 0.89 -1.6 73,896 + HGI48_RS00280 0.89 -0.1 73,896 + HGI48_RS00280 0.89 -1.0 73,896 + HGI48_RS00280 0.89 -1.9 73,896 + HGI48_RS00280 0.89 +1.1 73,897 - HGI48_RS00280 0.89 -1.0 73,901 + HGI48_RS00280 0.89 +0.5 73,902 - HGI48_RS00280 0.89 +0.1 73,902 - HGI48_RS00280 0.89 +1.6 73,902 - HGI48_RS00280 0.89 +1.0 73,906 + HGI48_RS00280 0.89 -1.4 73,908 + HGI48_RS00280 0.90 +0.1 73,909 - HGI48_RS00280 0.90 +0.3 74,001 + -2.2 74,001 + -0.3 74,002 - +1.1 74,002 - +0.7 74,002 - +0.8 74,024 - -0.9 74,046 - +0.3 74,083 + +0.6 74,123 - -0.3 74,123 - -1.3 74,125 + -0.6 74,142 + +0.1 74,142 + -0.4 74,142 + +0.4 74,143 - -0.9 74,164 - -0.3 74,207 + +1.6 74,208 - +0.5 74,208 - -1.4 74,208 - +1.1 74,255 + +0.4 74,255 + -1.6 74,303 + -1.1 74,305 + +0.9 74,306 - +0.6 74,306 - +0.4 74,347 + -0.3 74,368 + -0.3 74,368 + -1.1 74,373 - -1.0 75,042 + +0.6 75,043 - +1.1 75,043 - -0.9
Or see this region's nucleotide sequence