Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00120 and HGI48_RS00125 are separated by 270 nucleotides HGI48_RS00125 and HGI48_RS00130 are separated by 140 nucleotides HGI48_RS00130 and HGI48_RS00135 are separated by 92 nucleotides
HGI48_RS00120: HGI48_RS00120 - GNAT family N-acetyltransferase, at 32,365 to 32,832
_RS00120
HGI48_RS00125: HGI48_RS00125 - DUF3861 domain-containing protein, at 33,103 to 33,393
_RS00125
HGI48_RS00130: HGI48_RS00130 - glucokinase, at 33,534 to 34,502
_RS00130
HGI48_RS00135: HGI48_RS00135 - alkylhydroperoxidase domain protein, at 34,595 to 35,713
_RS00135
Position (kb) 33
34
35 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 32.587 kb on + strand at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.600 kb on + strand, within HGI48_RS00120 at 32.601 kb on - strand, within HGI48_RS00120 at 32.601 kb on - strand, within HGI48_RS00120 at 32.606 kb on + strand, within HGI48_RS00120 at 32.606 kb on + strand, within HGI48_RS00120 at 32.607 kb on - strand, within HGI48_RS00120 at 32.607 kb on - strand at 32.607 kb on - strand at 32.710 kb on - strand, within HGI48_RS00120 at 32.710 kb on - strand at 32.794 kb on + strand at 32.795 kb on - strand at 32.795 kb on - strand at 32.795 kb on - strand at 32.852 kb on + strand at 32.853 kb on - strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.890 kb on + strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.891 kb on - strand at 32.896 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.064 kb on + strand at 33.065 kb on - strand at 33.065 kb on - strand at 33.097 kb on - strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.102 kb on + strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.103 kb on - strand at 33.110 kb on - strand at 33.110 kb on - strand at 33.120 kb on + strand at 33.121 kb on - strand at 33.121 kb on - strand at 33.136 kb on - strand, within HGI48_RS00125 at 33.136 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand, within HGI48_RS00125 at 33.361 kb on - strand at 33.361 kb on - strand, within HGI48_RS00125 at 33.401 kb on + strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.402 kb on - strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.437 kb on + strand at 33.438 kb on - strand at 33.438 kb on - strand at 33.438 kb on - strand at 33.443 kb on + strand at 33.444 kb on - strand at 33.498 kb on + strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.499 kb on - strand at 33.501 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.511 kb on - strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.528 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.533 kb on + strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.534 kb on - strand at 33.543 kb on + strand at 33.544 kb on - strand at 33.544 kb on - strand at 33.553 kb on + strand at 33.553 kb on + strand at 33.554 kb on - strand at 33.623 kb on + strand at 33.623 kb on + strand at 33.623 kb on + strand at 33.673 kb on + strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.674 kb on - strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.716 kb on + strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.717 kb on - strand, within HGI48_RS00130 at 33.933 kb on + strand at 33.933 kb on + strand, within HGI48_RS00130 at 34.057 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.127 kb on + strand, within HGI48_RS00130 at 34.128 kb on - strand, within HGI48_RS00130 at 34.128 kb on - strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.311 kb on + strand, within HGI48_RS00130 at 34.312 kb on - strand, within HGI48_RS00130 at 34.312 kb on - strand, within HGI48_RS00130 at 34.470 kb on + strand at 34.470 kb on + strand at 34.628 kb on + strand at 34.847 kb on + strand, within HGI48_RS00135 at 34.848 kb on - strand, within HGI48_RS00135 at 34.848 kb on - strand, within HGI48_RS00135 at 34.848 kb on - strand at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.905 kb on + strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.906 kb on - strand, within HGI48_RS00135 at 34.909 kb on + strand, within HGI48_RS00135 at 34.909 kb on + strand, within HGI48_RS00135 at 34.909 kb on + strand, within HGI48_RS00135 at 34.910 kb on - strand, within HGI48_RS00135 at 34.910 kb on - strand, within HGI48_RS00135 at 34.979 kb on - strand, within HGI48_RS00135 at 34.979 kb on - strand, within HGI48_RS00135 at 34.980 kb on + strand, within HGI48_RS00135 at 34.980 kb on + strand, within HGI48_RS00135 at 35.049 kb on + strand, within HGI48_RS00135 at 35.050 kb on - strand, within HGI48_RS00135 at 35.316 kb on - strand, within HGI48_RS00135 at 35.487 kb on + strand at 35.487 kb on + strand, within HGI48_RS00135 at 35.498 kb on + strand, within HGI48_RS00135
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 32,587 + +1.1 32,600 + HGI48_RS00120 0.50 +0.1 32,600 + HGI48_RS00120 0.50 -1.9 32,600 + HGI48_RS00120 0.50 -1.7 32,600 + +1.9 32,600 + HGI48_RS00120 0.50 -1.4 32,600 + HGI48_RS00120 0.50 +0.4 32,600 + HGI48_RS00120 0.50 -1.1 32,601 - HGI48_RS00120 0.50 +0.1 32,601 - HGI48_RS00120 0.50 -1.9 32,606 + HGI48_RS00120 0.51 -2.4 32,606 + HGI48_RS00120 0.51 -0.0 32,607 - HGI48_RS00120 0.52 -0.3 32,607 - +0.7 32,607 - +0.1 32,710 - HGI48_RS00120 0.74 -0.0 32,710 - +0.1 32,794 + -1.3 32,795 - -2.7 32,795 - -0.3 32,795 - +0.3 32,852 + +1.1 32,853 - -0.1 32,890 + +0.4 32,890 + -0.9 32,890 + -1.0 32,890 + -1.6 32,891 - -0.5 32,891 - -0.3 32,891 - -0.9 32,891 - +2.3 32,891 - -2.4 32,896 + -0.1 33,064 + +0.7 33,064 + -0.3 33,064 + -0.5 33,064 + +1.5 33,064 + +0.3 33,064 + +1.0 33,064 + -1.0 33,064 + -0.0 33,064 + -0.3 33,065 - -0.4 33,065 - +0.6 33,097 - -0.3 33,102 + -0.9 33,102 + -0.9 33,102 + -1.0 33,102 + -0.6 33,102 + -0.3 33,102 + +0.7 33,102 + +0.4 33,103 - -2.9 33,103 - +0.4 33,103 - -1.0 33,103 - -0.2 33,110 - +0.1 33,110 - -0.3 33,120 + -1.3 33,121 - +1.4 33,121 - +0.6 33,136 - HGI48_RS00125 0.11 -1.6 33,136 - HGI48_RS00125 0.11 -0.3 33,361 - HGI48_RS00125 0.89 -1.3 33,361 - HGI48_RS00125 0.89 -0.5 33,361 - HGI48_RS00125 0.89 -0.9 33,361 - HGI48_RS00125 0.89 +0.1 33,361 - HGI48_RS00125 0.89 -0.0 33,361 - -0.9 33,361 - HGI48_RS00125 0.89 -0.3 33,401 + +1.7 33,402 - +0.5 33,402 - -3.5 33,402 - -2.4 33,402 - +1.0 33,402 - -2.0 33,437 + +0.4 33,437 + +1.6 33,437 + -0.3 33,437 + +0.1 33,437 + -1.6 33,437 + -0.6 33,438 - -2.2 33,438 - -0.7 33,438 - +0.4 33,443 + -0.0 33,444 - -0.5 33,498 + +0.7 33,499 - -1.6 33,499 - +0.5 33,499 - -1.7 33,499 - +0.8 33,499 - -2.0 33,501 - -0.3 33,511 - -1.3 33,511 - -0.9 33,511 - +1.0 33,511 - -0.9 33,511 - +0.1 33,528 + -1.8 33,528 + -0.5 33,528 + -1.1 33,528 + -0.3 33,528 + -1.3 33,533 + -0.4 33,533 + +1.4 33,533 + +1.6 33,533 + +1.0 33,533 + -0.9 33,533 + -2.1 33,534 - -0.3 33,534 - -2.1 33,534 - -2.1 33,534 - -0.5 33,543 + -0.9 33,544 - -0.6 33,544 - -0.9 33,553 + -0.9 33,553 + -1.3 33,554 - +1.7 33,623 + -0.4 33,623 + +3.0 33,623 + +0.3 33,673 + HGI48_RS00130 0.14 +0.7 33,674 - HGI48_RS00130 0.14 +1.0 33,674 - HGI48_RS00130 0.14 -0.1 33,674 - HGI48_RS00130 0.14 -2.7 33,716 + HGI48_RS00130 0.19 -0.5 33,716 + HGI48_RS00130 0.19 +0.5 33,716 + HGI48_RS00130 0.19 -1.9 33,716 + HGI48_RS00130 0.19 +0.4 33,717 - HGI48_RS00130 0.19 +0.5 33,717 - HGI48_RS00130 0.19 -0.9 33,717 - HGI48_RS00130 0.19 +0.7 33,717 - HGI48_RS00130 0.19 -0.1 33,717 - HGI48_RS00130 0.19 -1.1 33,933 + +0.7 33,933 + HGI48_RS00130 0.41 +0.7 34,057 + HGI48_RS00130 0.54 -1.3 34,127 + HGI48_RS00130 0.61 -0.5 34,127 + HGI48_RS00130 0.61 -0.0 34,127 + HGI48_RS00130 0.61 +1.2 34,127 + HGI48_RS00130 0.61 -1.3 34,127 + HGI48_RS00130 0.61 -1.9 34,128 - HGI48_RS00130 0.61 -1.3 34,128 - HGI48_RS00130 0.61 -1.3 34,311 + HGI48_RS00130 0.80 +0.7 34,311 + HGI48_RS00130 0.80 -0.1 34,311 + HGI48_RS00130 0.80 -0.5 34,311 + HGI48_RS00130 0.80 +0.0 34,311 + -0.9 34,311 + HGI48_RS00130 0.80 -0.1 34,311 + HGI48_RS00130 0.80 +0.7 34,311 + HGI48_RS00130 0.80 +1.8 34,311 + HGI48_RS00130 0.80 -1.0 34,312 - HGI48_RS00130 0.80 -0.7 34,312 - HGI48_RS00130 0.80 -1.6 34,470 + -0.0 34,470 + +0.9 34,628 + +0.1 34,847 + HGI48_RS00135 0.23 -3.1 34,848 - HGI48_RS00135 0.23 -0.1 34,848 - HGI48_RS00135 0.23 -1.3 34,848 - +2.3 34,905 + HGI48_RS00135 0.28 -1.8 34,905 + HGI48_RS00135 0.28 +1.0 34,905 + HGI48_RS00135 0.28 +0.7 34,905 + HGI48_RS00135 0.28 +0.0 34,905 + HGI48_RS00135 0.28 -1.0 34,906 - HGI48_RS00135 0.28 -0.0 34,906 - HGI48_RS00135 0.28 -1.9 34,906 - HGI48_RS00135 0.28 -2.4 34,906 - HGI48_RS00135 0.28 +1.9 34,906 - HGI48_RS00135 0.28 +0.3 34,909 + HGI48_RS00135 0.28 -0.4 34,909 + HGI48_RS00135 0.28 +0.1 34,909 + HGI48_RS00135 0.28 +0.7 34,910 - HGI48_RS00135 0.28 -1.3 34,910 - HGI48_RS00135 0.28 -1.4 34,979 - HGI48_RS00135 0.34 -0.4 34,979 - HGI48_RS00135 0.34 +0.9 34,980 + HGI48_RS00135 0.34 +0.7 34,980 + HGI48_RS00135 0.34 -1.9 35,049 + HGI48_RS00135 0.41 +0.3 35,050 - HGI48_RS00135 0.41 -0.1 35,316 - HGI48_RS00135 0.64 -1.9 35,487 + +1.1 35,487 + HGI48_RS00135 0.80 -1.6 35,498 + HGI48_RS00135 0.81 +0.4
Or see this region's nucleotide sequence