Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00035 and HGI48_RS00040 are separated by 193 nucleotides HGI48_RS00040 and HGI48_RS00045 overlap by 4 nucleotides HGI48_RS00045 and HGI48_RS00050 are separated by 131 nucleotides HGI48_RS00050 and HGI48_RS00055 are separated by 202 nucleotides
HGI48_RS00035: HGI48_RS00035 - MFS transporter, at 11,041 to 12,228
_RS00035
HGI48_RS00040: HGI48_RS00040 - 16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ, at 12,422 to 13,174
_RS00040
HGI48_RS00045: HGI48_RS00045 - oligopeptidase A, at 13,171 to 15,213
_RS00045
HGI48_RS00050: HGI48_RS00050 - DUF2623 domain-containing protein, at 15,345 to 15,629
_RS00050
HGI48_RS00055: HGI48_RS00055 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 15,832 to 16,674
_RS00055
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 12.238 kb on - strand at 12.240 kb on + strand at 12.241 kb on - strand at 12.245 kb on + strand at 12.246 kb on - strand at 12.246 kb on - strand at 12.246 kb on - strand at 12.246 kb on - strand at 12.246 kb on - strand at 12.279 kb on + strand at 12.280 kb on - strand at 12.286 kb on - strand at 12.290 kb on + strand at 12.291 kb on - strand at 12.320 kb on - strand at 12.334 kb on + strand at 12.334 kb on + strand at 12.335 kb on - strand at 12.339 kb on + strand at 12.339 kb on + strand at 12.669 kb on + strand, within HGI48_RS00040 at 12.670 kb on - strand at 12.725 kb on + strand, within HGI48_RS00040 at 12.726 kb on - strand, within HGI48_RS00040 at 12.726 kb on - strand, within HGI48_RS00040 at 12.913 kb on - strand, within HGI48_RS00040 at 12.913 kb on - strand, within HGI48_RS00040 at 12.913 kb on - strand, within HGI48_RS00040 at 12.913 kb on - strand, within HGI48_RS00040 at 12.922 kb on + strand, within HGI48_RS00040 at 13.039 kb on + strand, within HGI48_RS00040 at 13.040 kb on - strand, within HGI48_RS00040 at 13.040 kb on - strand, within HGI48_RS00040 at 13.160 kb on + strand at 13.187 kb on + strand at 13.373 kb on + strand at 13.373 kb on + strand at 13.373 kb on + strand at 13.373 kb on + strand at 13.373 kb on + strand at 13.374 kb on - strand at 13.374 kb on - strand at 13.374 kb on - strand at 13.374 kb on - strand at 13.374 kb on - strand at 13.374 kb on - strand at 13.374 kb on - strand at 13.379 kb on + strand, within HGI48_RS00045 at 13.379 kb on + strand at 13.379 kb on + strand, within HGI48_RS00045 at 13.380 kb on - strand, within HGI48_RS00045 at 13.380 kb on - strand, within HGI48_RS00045 at 13.380 kb on - strand, within HGI48_RS00045 at 13.380 kb on - strand, within HGI48_RS00045 at 13.380 kb on - strand, within HGI48_RS00045 at 13.380 kb on - strand, within HGI48_RS00045 at 13.383 kb on - strand, within HGI48_RS00045 at 13.521 kb on - strand, within HGI48_RS00045 at 13.590 kb on - strand, within HGI48_RS00045 at 13.782 kb on + strand, within HGI48_RS00045 at 13.782 kb on + strand, within HGI48_RS00045 at 13.782 kb on + strand, within HGI48_RS00045 at 13.782 kb on + strand, within HGI48_RS00045 at 13.782 kb on + strand, within HGI48_RS00045 at 13.782 kb on + strand at 13.782 kb on + strand, within HGI48_RS00045 at 13.783 kb on - strand, within HGI48_RS00045 at 13.783 kb on - strand, within HGI48_RS00045 at 13.783 kb on - strand, within HGI48_RS00045 at 13.783 kb on - strand, within HGI48_RS00045 at 13.783 kb on - strand, within HGI48_RS00045 at 13.875 kb on + strand, within HGI48_RS00045 at 13.876 kb on - strand, within HGI48_RS00045 at 13.876 kb on - strand, within HGI48_RS00045 at 13.886 kb on + strand, within HGI48_RS00045 at 13.886 kb on + strand, within HGI48_RS00045 at 13.887 kb on - strand, within HGI48_RS00045 at 13.887 kb on - strand, within HGI48_RS00045 at 13.921 kb on - strand, within HGI48_RS00045 at 13.991 kb on + strand, within HGI48_RS00045 at 13.991 kb on + strand, within HGI48_RS00045 at 13.991 kb on + strand at 13.992 kb on - strand, within HGI48_RS00045 at 13.992 kb on - strand, within HGI48_RS00045 at 14.129 kb on - strand, within HGI48_RS00045 at 14.147 kb on + strand, within HGI48_RS00045 at 14.177 kb on + strand, within HGI48_RS00045 at 14.178 kb on - strand, within HGI48_RS00045 at 14.178 kb on - strand at 14.178 kb on - strand, within HGI48_RS00045 at 14.205 kb on - strand, within HGI48_RS00045 at 14.207 kb on + strand, within HGI48_RS00045 at 14.207 kb on + strand, within HGI48_RS00045 at 14.208 kb on - strand, within HGI48_RS00045 at 14.208 kb on - strand, within HGI48_RS00045 at 14.208 kb on - strand, within HGI48_RS00045 at 14.208 kb on - strand at 14.208 kb on - strand, within HGI48_RS00045 at 14.507 kb on + strand, within HGI48_RS00045 at 14.540 kb on + strand, within HGI48_RS00045 at 14.541 kb on - strand, within HGI48_RS00045 at 14.541 kb on - strand, within HGI48_RS00045 at 14.541 kb on - strand, within HGI48_RS00045 at 14.541 kb on - strand, within HGI48_RS00045 at 14.691 kb on + strand, within HGI48_RS00045 at 14.895 kb on - strand, within HGI48_RS00045 at 14.927 kb on + strand, within HGI48_RS00045 at 14.928 kb on - strand, within HGI48_RS00045 at 14.928 kb on - strand, within HGI48_RS00045 at 14.968 kb on + strand, within HGI48_RS00045 at 15.199 kb on + strand at 15.200 kb on - strand at 15.200 kb on - strand at 15.245 kb on + strand at 15.245 kb on + strand at 15.245 kb on + strand at 15.246 kb on - strand at 15.347 kb on - strand at 15.347 kb on - strand at 15.359 kb on + strand at 15.359 kb on + strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.360 kb on - strand at 15.370 kb on + strand at 15.370 kb on + strand at 15.453 kb on + strand, within HGI48_RS00050 at 15.453 kb on + strand, within HGI48_RS00050 at 15.453 kb on + strand, within HGI48_RS00050 at 15.453 kb on + strand, within HGI48_RS00050 at 15.454 kb on - strand, within HGI48_RS00050 at 15.454 kb on - strand at 15.550 kb on + strand, within HGI48_RS00050 at 15.550 kb on + strand, within HGI48_RS00050 at 15.654 kb on - strand at 15.657 kb on + strand at 15.657 kb on + strand at 15.708 kb on + strand at 15.769 kb on - strand at 15.777 kb on + strand at 15.777 kb on + strand at 15.777 kb on + strand at 15.777 kb on + strand at 15.777 kb on + strand at 15.778 kb on - strand at 15.778 kb on - strand at 15.778 kb on - strand at 15.778 kb on - strand at 15.779 kb on + strand at 15.779 kb on + strand at 15.779 kb on + strand at 15.779 kb on + strand at 15.779 kb on + strand at 15.779 kb on + strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.780 kb on - strand at 15.782 kb on + strand at 15.782 kb on + strand at 15.783 kb on - strand at 15.783 kb on - strand at 15.831 kb on + strand at 15.831 kb on + strand at 15.831 kb on + strand at 15.832 kb on - strand at 15.832 kb on - strand at 15.841 kb on + strand at 15.943 kb on + strand, within HGI48_RS00055 at 15.943 kb on + strand, within HGI48_RS00055 at 15.943 kb on + strand, within HGI48_RS00055 at 15.973 kb on + strand at 16.013 kb on - strand, within HGI48_RS00055 at 16.072 kb on + strand, within HGI48_RS00055 at 16.072 kb on + strand, within HGI48_RS00055 at 16.072 kb on + strand, within HGI48_RS00055 at 16.072 kb on + strand, within HGI48_RS00055 at 16.072 kb on + strand, within HGI48_RS00055 at 16.072 kb on + strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.073 kb on - strand, within HGI48_RS00055 at 16.093 kb on + strand, within HGI48_RS00055 at 16.093 kb on + strand, within HGI48_RS00055 at 16.095 kb on + strand, within HGI48_RS00055 at 16.095 kb on + strand, within HGI48_RS00055 at 16.117 kb on + strand, within HGI48_RS00055 at 16.121 kb on - strand, within HGI48_RS00055
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 12,238 - -1.6 12,240 + +0.2 12,241 - +0.2 12,245 + -0.2 12,246 - -1.9 12,246 - -2.4 12,246 - +0.1 12,246 - -1.6 12,246 - -1.8 12,279 + +0.7 12,280 - -0.6 12,286 - -0.6 12,290 + -0.3 12,291 - -1.3 12,320 - -2.4 12,334 + +1.0 12,334 + -1.9 12,335 - -0.3 12,339 + +1.2 12,339 + -0.7 12,669 + HGI48_RS00040 0.33 +0.7 12,670 - +1.1 12,725 + HGI48_RS00040 0.40 -2.4 12,726 - HGI48_RS00040 0.40 -0.6 12,726 - HGI48_RS00040 0.40 -1.6 12,913 - HGI48_RS00040 0.65 +0.0 12,913 - HGI48_RS00040 0.65 +0.9 12,913 - HGI48_RS00040 0.65 -1.0 12,913 - HGI48_RS00040 0.65 -1.9 12,922 + HGI48_RS00040 0.66 -1.6 13,039 + HGI48_RS00040 0.82 +0.5 13,040 - HGI48_RS00040 0.82 +0.5 13,040 - HGI48_RS00040 0.82 -1.6 13,160 + -1.3 13,187 + -0.0 13,373 + -2.4 13,373 + -1.9 13,373 + -0.5 13,373 + -1.9 13,373 + +0.9 13,374 - -2.4 13,374 - -0.9 13,374 - -1.6 13,374 - -1.3 13,374 - -1.4 13,374 - -2.4 13,374 - +3.0 13,379 + HGI48_RS00045 0.10 -2.5 13,379 + -0.3 13,379 + HGI48_RS00045 0.10 -2.4 13,380 - HGI48_RS00045 0.10 -2.3 13,380 - HGI48_RS00045 0.10 -0.6 13,380 - HGI48_RS00045 0.10 -1.3 13,380 - HGI48_RS00045 0.10 -1.6 13,380 - HGI48_RS00045 0.10 -0.4 13,380 - HGI48_RS00045 0.10 +0.1 13,383 - HGI48_RS00045 0.10 -2.7 13,521 - HGI48_RS00045 0.17 +0.7 13,590 - HGI48_RS00045 0.21 -0.9 13,782 + HGI48_RS00045 0.30 -0.6 13,782 + HGI48_RS00045 0.30 -0.3 13,782 + HGI48_RS00045 0.30 +0.7 13,782 + HGI48_RS00045 0.30 -1.4 13,782 + HGI48_RS00045 0.30 -2.1 13,782 + -0.9 13,782 + HGI48_RS00045 0.30 -1.6 13,783 - HGI48_RS00045 0.30 -2.1 13,783 - HGI48_RS00045 0.30 -2.3 13,783 - HGI48_RS00045 0.30 +0.7 13,783 - HGI48_RS00045 0.30 -0.7 13,783 - HGI48_RS00045 0.30 +0.1 13,875 + HGI48_RS00045 0.34 -0.3 13,876 - HGI48_RS00045 0.35 -2.2 13,876 - HGI48_RS00045 0.35 -2.8 13,886 + HGI48_RS00045 0.35 -0.6 13,886 + HGI48_RS00045 0.35 -1.1 13,887 - HGI48_RS00045 0.35 -2.3 13,887 - HGI48_RS00045 0.35 -3.1 13,921 - HGI48_RS00045 0.37 -1.6 13,991 + HGI48_RS00045 0.40 -1.2 13,991 + HGI48_RS00045 0.40 -0.4 13,991 + -0.9 13,992 - HGI48_RS00045 0.40 -0.3 13,992 - HGI48_RS00045 0.40 -0.2 14,129 - HGI48_RS00045 0.47 -0.5 14,147 + HGI48_RS00045 0.48 -1.1 14,177 + HGI48_RS00045 0.49 -2.6 14,178 - HGI48_RS00045 0.49 -0.6 14,178 - +0.7 14,178 - HGI48_RS00045 0.49 +1.7 14,205 - HGI48_RS00045 0.51 +1.0 14,207 + HGI48_RS00045 0.51 -1.6 14,207 + HGI48_RS00045 0.51 -1.9 14,208 - HGI48_RS00045 0.51 -0.2 14,208 - HGI48_RS00045 0.51 -0.1 14,208 - HGI48_RS00045 0.51 -0.9 14,208 - -0.9 14,208 - HGI48_RS00045 0.51 -1.5 14,507 + HGI48_RS00045 0.65 -1.6 14,540 + HGI48_RS00045 0.67 -1.9 14,541 - HGI48_RS00045 0.67 +0.7 14,541 - HGI48_RS00045 0.67 -2.4 14,541 - HGI48_RS00045 0.67 -2.6 14,541 - HGI48_RS00045 0.67 -2.3 14,691 + HGI48_RS00045 0.74 -1.9 14,895 - HGI48_RS00045 0.84 -1.6 14,927 + HGI48_RS00045 0.86 -1.9 14,928 - HGI48_RS00045 0.86 -1.3 14,928 - HGI48_RS00045 0.86 +0.2 14,968 + HGI48_RS00045 0.88 -3.0 15,199 + +0.5 15,200 - -0.3 15,200 - -0.3 15,245 + -1.0 15,245 + -0.9 15,245 + -2.3 15,246 - +1.4 15,347 - +0.1 15,347 - +0.7 15,359 + +0.7 15,359 + -0.3 15,360 - +0.0 15,360 - -0.9 15,360 - +0.7 15,360 - +0.5 15,370 + -0.4 15,370 + +0.7 15,453 + HGI48_RS00050 0.38 -0.5 15,453 + HGI48_RS00050 0.38 -0.9 15,453 + HGI48_RS00050 0.38 -0.1 15,453 + HGI48_RS00050 0.38 -1.6 15,454 - HGI48_RS00050 0.38 -0.7 15,454 - +0.1 15,550 + HGI48_RS00050 0.72 +0.1 15,550 + HGI48_RS00050 0.72 +2.0 15,654 - +1.1 15,657 + +1.1 15,657 + +1.9 15,708 + +0.7 15,769 - -1.0 15,777 + +0.1 15,777 + -1.8 15,777 + -0.3 15,777 + -1.3 15,777 + -0.9 15,778 - -0.7 15,778 - +0.8 15,778 - +1.6 15,778 - -0.7 15,779 + -3.1 15,779 + -1.3 15,779 + +0.5 15,779 + -0.1 15,779 + +1.1 15,779 + -0.3 15,780 - -1.0 15,780 - +0.5 15,780 - -0.7 15,780 - +1.1 15,780 - -2.4 15,780 - +0.7 15,780 - -0.7 15,780 - -0.5 15,780 - +0.7 15,782 + -0.0 15,782 + -1.6 15,783 - +0.1 15,783 - -0.7 15,831 + +0.2 15,831 + +0.1 15,831 + +0.3 15,832 - -0.4 15,832 - -1.9 15,841 + -2.7 15,943 + HGI48_RS00055 0.13 +0.3 15,943 + HGI48_RS00055 0.13 +0.1 15,943 + HGI48_RS00055 0.13 +1.3 15,973 + -0.9 16,013 - HGI48_RS00055 0.21 -0.0 16,072 + HGI48_RS00055 0.28 -2.5 16,072 + HGI48_RS00055 0.28 -0.6 16,072 + HGI48_RS00055 0.28 +1.1 16,072 + HGI48_RS00055 0.28 -2.7 16,072 + HGI48_RS00055 0.28 +0.4 16,072 + HGI48_RS00055 0.28 -0.9 16,073 - HGI48_RS00055 0.29 +2.1 16,073 - HGI48_RS00055 0.29 -0.9 16,073 - HGI48_RS00055 0.29 -0.4 16,073 - HGI48_RS00055 0.29 +0.2 16,073 - HGI48_RS00055 0.29 -0.6 16,073 - HGI48_RS00055 0.29 -0.7 16,073 - +1.3 16,073 - HGI48_RS00055 0.29 +0.4 16,073 - HGI48_RS00055 0.29 -0.8 16,073 - HGI48_RS00055 0.29 -0.4 16,073 - HGI48_RS00055 0.29 -0.9 16,073 - HGI48_RS00055 0.29 -0.5 16,073 - HGI48_RS00055 0.29 -1.6 16,073 - HGI48_RS00055 0.29 +2.5 16,073 - HGI48_RS00055 0.29 +1.8 16,093 + HGI48_RS00055 0.31 -0.4 16,093 + HGI48_RS00055 0.31 -0.0 16,095 + HGI48_RS00055 0.31 +1.1 16,095 + HGI48_RS00055 0.31 +1.7 16,117 + HGI48_RS00055 0.34 -0.3 16,121 - HGI48_RS00055 0.34 -0.4
Or see this region's nucleotide sequence