Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21160

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,718,609	+		HGI48_RS21145	0.56	+1.2
4,718,609	+		HGI48_RS21145	0.56	-0.1
4,718,609	+				-0.7
4,718,609	+		HGI48_RS21145	0.56	-1.0
4,718,610	-		HGI48_RS21145	0.56	+0.2
4,718,610	-		HGI48_RS21145	0.56	-0.5
4,718,610	-		HGI48_RS21145	0.56	+0.7
4,718,610	-				+0.9
4,718,610	-		HGI48_RS21145	0.56	-0.3
4,718,630	+		HGI48_RS21145	0.59	+0.3
4,718,630	+		HGI48_RS21145	0.59	-0.1
4,718,630	+		HGI48_RS21145	0.59	-1.1
4,718,631	-		HGI48_RS21145	0.60	+0.5
4,718,631	-		HGI48_RS21145	0.60	-0.2
4,718,631	-		HGI48_RS21145	0.60	+0.5
4,718,631	-		HGI48_RS21145	0.60	+0.3
4,718,631	-		HGI48_RS21145	0.60	+0.5
4,718,634	-		HGI48_RS21145	0.60	-1.1
4,718,687	+		HGI48_RS21145	0.68	-2.3
4,718,687	+		HGI48_RS21145	0.68	-1.1
4,718,688	-		HGI48_RS21145	0.68	+0.0
4,718,709	+		HGI48_RS21145	0.72	-1.2
4,718,742	-		HGI48_RS21145	0.77	-0.8
4,718,742	-		HGI48_RS21145	0.77	-0.9
4,718,789	+		HGI48_RS21145	0.84	+0.4
4,718,790	-		HGI48_RS21145	0.84	-0.7
4,718,790	-		HGI48_RS21145	0.84	+1.8
4,718,790	-		HGI48_RS21145	0.84	-0.6
4,718,888	+				-2.6
4,718,888	+				+0.6
4,718,888	+				-0.7
4,718,888	+				+0.9
4,718,888	+				+0.9
4,718,889	-				+1.1
4,718,889	-				-0.7
4,718,891	+				-1.9
4,718,891	+				-0.0
4,718,892	-				-1.7
4,718,892	-				+0.7
4,718,892	-				-0.4
4,718,892	-				+1.9
4,719,000	+		HGI48_RS21150	0.31	-0.1
4,719,289	+				-1.1
4,719,320	-				+0.1
4,719,416	+				+0.3
4,719,416	+				+0.3
4,719,417	-				-0.2
4,719,420	-				-1.7
4,719,420	-				-0.5
4,719,420	-				-1.0
4,719,431	-				-0.9
4,719,481	+				-0.0
4,719,517	+				-0.8
4,719,517	+				+0.0
4,719,517	+				-1.4
4,719,517	+				+0.5
4,719,517	+				-0.2
4,719,517	+				-1.0
4,719,518	-				+1.4
4,719,518	-				+0.7
4,719,518	-				-0.1
4,719,518	-				-0.7
4,719,518	-				+0.7
4,719,519	+				+0.5
4,719,519	+				-1.1
4,719,520	-				-2.1
4,719,520	-				+1.5
4,719,520	-				-2.3
4,719,621	+				-0.8
4,719,621	+				-1.1
4,719,621	+				+0.1
4,719,621	+				-0.7
4,719,621	+				-0.3
4,719,621	+				+0.7
4,719,621	+				+0.3
4,719,621	+				-1.4
4,719,621	+				-0.0
4,719,621	+				-0.8
4,719,621	+				+0.9
4,719,621	+				-1.4
4,719,622	-				+1.7
4,719,622	-				-0.1
4,719,622	-				-0.8
4,719,622	-				+0.7
4,719,622	-				-0.3
4,719,622	-				-0.7
4,719,622	-				-1.8
4,719,622	-				-1.1
4,719,623	+				+0.1
4,719,623	+				+0.3
4,719,624	-				+0.2
4,719,737	+		HGI48_RS21160	0.11	-1.1
4,719,737	+		HGI48_RS21160	0.11	-1.1
4,719,737	+		HGI48_RS21160	0.11	-0.5
4,719,737	+		HGI48_RS21160	0.11	+0.5
4,719,737	+		HGI48_RS21160	0.11	+0.1
4,719,738	-		HGI48_RS21160	0.11	-0.5
4,719,738	-		HGI48_RS21160	0.11	+0.3
4,719,738	-		HGI48_RS21160	0.11	+0.5
4,719,818	+		HGI48_RS21160	0.15	+1.9
4,719,818	+		HGI48_RS21160	0.15	-2.8
4,719,818	+		HGI48_RS21160	0.15	-0.4
4,719,818	+				+1.6
4,719,819	-		HGI48_RS21160	0.15	-1.1
4,719,819	-		HGI48_RS21160	0.15	+0.7
4,719,854	+		HGI48_RS21160	0.18	-0.1
4,719,854	+		HGI48_RS21160	0.18	-1.7
4,719,854	+		HGI48_RS21160	0.18	-1.8
4,719,855	-		HGI48_RS21160	0.18	+0.5
4,719,855	-		HGI48_RS21160	0.18	-0.7
4,719,855	-		HGI48_RS21160	0.18	+0.3
4,719,917	+		HGI48_RS21160	0.21	+0.9
4,719,917	+		HGI48_RS21160	0.21	-0.4
4,719,917	+		HGI48_RS21160	0.21	-0.5
4,719,917	+		HGI48_RS21160	0.21	-1.1
4,719,917	+		HGI48_RS21160	0.21	-0.3
4,719,917	+		HGI48_RS21160	0.21	-0.0
4,719,917	+		HGI48_RS21160	0.21	+2.0
4,719,917	+		HGI48_RS21160	0.21	-2.1
4,719,918	-		HGI48_RS21160	0.21	-0.2
4,719,946	+		HGI48_RS21160	0.23	+1.4
4,719,946	+		HGI48_RS21160	0.23	-0.7
4,719,947	-		HGI48_RS21160	0.23	+0.2
4,720,034	+		HGI48_RS21160	0.28	+2.0
4,720,137	+		HGI48_RS21160	0.34	+0.4
4,720,137	+		HGI48_RS21160	0.34	-2.6
4,720,138	-		HGI48_RS21160	0.34	+0.4
4,720,182	-		HGI48_RS21160	0.37	-1.1
4,720,182	-		HGI48_RS21160	0.37	+0.2
4,720,203	+		HGI48_RS21160	0.38	+0.5
4,720,205	+				+0.9
4,720,205	+		HGI48_RS21160	0.38	+1.9
4,720,205	+		HGI48_RS21160	0.38	+0.4
4,720,205	+		HGI48_RS21160	0.38	-1.3
4,720,205	+		HGI48_RS21160	0.38	+0.4
4,720,205	+		HGI48_RS21160	0.38	-0.4
4,720,205	+		HGI48_RS21160	0.38	-0.4
4,720,206	-		HGI48_RS21160	0.38	-1.0
4,720,206	-		HGI48_RS21160	0.38	-0.3
4,720,206	-		HGI48_RS21160	0.38	+0.6
4,720,206	-		HGI48_RS21160	0.38	+0.1
4,720,206	-		HGI48_RS21160	0.38	+0.2
4,720,275	+				-0.7
4,720,275	+		HGI48_RS21160	0.43	+0.4
4,720,276	-		HGI48_RS21160	0.43	-1.4
4,720,276	-		HGI48_RS21160	0.43	-2.7
4,720,276	-		HGI48_RS21160	0.43	-0.3
4,720,293	+		HGI48_RS21160	0.44	-0.9
4,720,293	+		HGI48_RS21160	0.44	-0.3
4,720,293	+				+2.2
4,720,293	+		HGI48_RS21160	0.44	-1.4
4,720,293	+		HGI48_RS21160	0.44	-0.3
4,720,294	-		HGI48_RS21160	0.44	-0.8
4,720,294	-				+0.9
4,720,294	-		HGI48_RS21160	0.44	+0.0
4,720,294	-		HGI48_RS21160	0.44	+1.2
4,720,294	-		HGI48_RS21160	0.44	-1.3
4,720,423	-		HGI48_RS21160	0.51	-0.4
4,720,423	-		HGI48_RS21160	0.51	-1.9
4,720,423	-				+0.9
4,720,490	+		HGI48_RS21160	0.55	-0.1
4,720,490	+				-0.1
4,720,490	+		HGI48_RS21160	0.55	+0.9
4,720,490	+		HGI48_RS21160	0.55	-1.0
4,720,490	+		HGI48_RS21160	0.55	+0.7
4,720,490	+		HGI48_RS21160	0.55	-1.1
4,720,490	+		HGI48_RS21160	0.55	-0.9
4,720,490	+		HGI48_RS21160	0.55	-0.6
4,720,490	+		HGI48_RS21160	0.55	+0.7
4,720,490	+		HGI48_RS21160	0.55	-0.4
4,720,490	+		HGI48_RS21160	0.55	+0.1
4,720,490	+		HGI48_RS21160	0.55	-2.8
4,720,490	+		HGI48_RS21160	0.55	+0.1
4,720,490	+		HGI48_RS21160	0.55	-1.1
4,720,490	+				+0.3
4,720,490	+		HGI48_RS21160	0.55	+0.9
4,720,491	-		HGI48_RS21160	0.55	-1.7
4,720,491	-		HGI48_RS21160	0.55	+0.7
4,720,491	-		HGI48_RS21160	0.55	+0.5
4,720,491	-		HGI48_RS21160	0.55	-2.3
4,720,491	-		HGI48_RS21160	0.55	-1.1
4,720,491	-		HGI48_RS21160	0.55	-0.9
4,720,491	-		HGI48_RS21160	0.55	+1.0
4,720,491	-		HGI48_RS21160	0.55	+0.0
4,720,491	-		HGI48_RS21160	0.55	+0.0
4,720,491	-		HGI48_RS21160	0.55	-1.7
4,720,491	-		HGI48_RS21160	0.55	+0.6
4,720,491	-		HGI48_RS21160	0.55	-0.1
4,720,491	-		HGI48_RS21160	0.55	-0.1
4,720,491	-		HGI48_RS21160	0.55	-0.1
4,720,524	+		HGI48_RS21160	0.57	-1.4
4,720,524	+		HGI48_RS21160	0.57	+0.6
4,720,524	+		HGI48_RS21160	0.57	-0.8
4,720,524	+		HGI48_RS21160	0.57	+0.5
4,720,524	+		HGI48_RS21160	0.57	-1.1
4,720,524	+				+0.9
4,720,524	+		HGI48_RS21160	0.57	+1.6
4,720,524	+		HGI48_RS21160	0.57	-0.1
4,720,524	+		HGI48_RS21160	0.57	-2.2
4,720,525	-		HGI48_RS21160	0.57	-1.3
4,720,525	-		HGI48_RS21160	0.57	-1.1
4,720,525	-		HGI48_RS21160	0.57	+1.2
4,720,525	-		HGI48_RS21160	0.57	+0.9
4,720,583	+		HGI48_RS21160	0.61	+1.2
4,720,584	-		HGI48_RS21160	0.61	+0.1
4,720,584	-		HGI48_RS21160	0.61	-1.9
4,720,625	+		HGI48_RS21160	0.63	-0.7
4,720,625	+		HGI48_RS21160	0.63	+0.5
4,720,626	-		HGI48_RS21160	0.63	+1.7
4,720,626	-		HGI48_RS21160	0.63	-0.4
4,720,626	-		HGI48_RS21160	0.63	-2.4
4,720,649	+		HGI48_RS21160	0.65	-1.7
4,720,649	+		HGI48_RS21160	0.65	-1.3
4,720,689	+				+0.3
4,720,689	+				-0.1
4,720,690	-		HGI48_RS21160	0.67	+1.2
4,720,779	+		HGI48_RS21160	0.72	-1.1
4,720,842	+		HGI48_RS21160	0.76	-0.7
4,720,964	+		HGI48_RS21160	0.83	+0.1
4,720,964	+		HGI48_RS21160	0.83	-1.9
4,720,964	+		HGI48_RS21160	0.83	-1.4
4,720,964	+				+0.9
4,720,964	+		HGI48_RS21160	0.83	-1.9
4,720,965	-		HGI48_RS21160	0.84	-0.2
4,720,965	-		HGI48_RS21160	0.84	+0.7
4,720,965	-		HGI48_RS21160	0.84	+1.1
4,720,965	-		HGI48_RS21160	0.84	+0.9
4,720,967	+		HGI48_RS21160	0.84	-0.7
4,721,100	+				-0.1
4,721,100	+				+0.3
4,721,101	-				-2.8
4,721,102	+				-0.1
4,721,103	-				+0.9
4,721,143	+				+0.4
4,721,144	-				-1.4
4,721,185	-				-0.4
4,721,186	+				-0.3
4,721,187	-				+0.5
4,721,207	-				-0.1
4,721,211	+				-0.1
4,721,211	+				-1.1
4,721,211	+				-0.1
4,721,211	+				-0.4
4,721,212	-				+0.9
4,721,212	-				+0.5
4,721,251	+				+0.9
4,721,262	+				+0.9
4,721,319	+				+0.9
4,721,319	+				-0.6
4,721,336	-				-0.2
4,721,368	-				-0.3
4,721,390	+				-0.5
4,721,391	-				+0.3
4,721,418	+				-0.4
4,721,506	+				-0.7
4,721,519	+				+0.1
4,721,519	+				-0.9
4,721,537	-				-0.9
4,721,587	+				-1.9
4,721,639	+				-0.1
4,721,696	+				+1.4
4,721,709	-				-1.9
4,721,715	+				+1.6
4,721,818	+				-0.8
4,721,819	-				-0.8
4,722,165	-				+1.3
4,722,165	-		HGI48_RS21165	0.25	-1.1