Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20565

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,594,234	-		HGI48_RS20560	0.23	-1.0
4,594,244	-		HGI48_RS20560	0.24	-1.4
4,594,281	-				-0.7
4,594,366	+		HGI48_RS20560	0.37	+0.6
4,594,418	+		HGI48_RS20560	0.43	-1.7
4,594,421	-		HGI48_RS20560	0.43	+0.4
4,594,451	+		HGI48_RS20560	0.47	+0.2
4,594,451	+		HGI48_RS20560	0.47	-1.7
4,594,451	+		HGI48_RS20560	0.47	+0.3
4,594,451	+		HGI48_RS20560	0.47	-0.7
4,594,451	+		HGI48_RS20560	0.47	+0.3
4,594,452	-		HGI48_RS20560	0.47	-1.4
4,594,452	-		HGI48_RS20560	0.47	+0.5
4,594,488	+		HGI48_RS20560	0.50	+0.8
4,594,488	+		HGI48_RS20560	0.50	-1.1
4,594,488	+				+1.5
4,594,489	-		HGI48_RS20560	0.51	+0.3
4,594,489	-		HGI48_RS20560	0.51	+0.2
4,594,578	+		HGI48_RS20560	0.60	-1.9
4,594,722	-		HGI48_RS20560	0.75	-0.1
4,594,839	+		HGI48_RS20560	0.88	+0.9
4,594,845	-		HGI48_RS20560	0.88	+0.0
4,594,845	-		HGI48_RS20560	0.88	+1.2
4,594,873	+				-1.1
4,594,921	-				-0.5
4,594,991	+				-1.4
4,595,012	+				+0.2
4,595,012	+				+1.1
4,595,012	+				-0.1
4,595,037	+				-1.1
4,595,038	-				+0.8
4,595,038	-				-1.4
4,595,040	+				-1.0
4,595,052	-				-0.2
4,595,093	-				+0.1
4,595,119	+				+0.2
4,595,119	+				-0.1
4,595,120	-				+0.2
4,595,167	+				-0.4
4,595,167	+				+0.9
4,595,167	+				+0.4
4,595,167	+				+0.2
4,595,167	+				-0.7
4,595,174	+				+0.1
4,595,174	+				-0.9
4,595,174	+				+1.3
4,595,174	+				+1.9
4,595,174	+				+1.0
4,595,174	+				-0.2
4,595,174	+				+1.7
4,595,175	-				+1.9
4,595,175	-				-0.7
4,595,175	-				-0.6
4,595,175	-				+0.7
4,595,238	-				-1.4
4,595,308	+		HGI48_RS20565	0.14	-1.1
4,595,309	-		HGI48_RS20565	0.14	-0.3
4,595,309	-		HGI48_RS20565	0.14	-0.5
4,595,311	+		HGI48_RS20565	0.14	+0.1
4,595,311	+		HGI48_RS20565	0.14	+0.0
4,595,311	+		HGI48_RS20565	0.14	-2.7
4,595,311	+		HGI48_RS20565	0.14	+1.8
4,595,311	+		HGI48_RS20565	0.14	-2.3
4,595,312	-		HGI48_RS20565	0.14	-0.3
4,595,312	-		HGI48_RS20565	0.14	-1.4
4,595,312	-		HGI48_RS20565	0.14	-1.7
4,595,312	-		HGI48_RS20565	0.14	-0.7
4,595,312	-				-0.1
4,595,314	-		HGI48_RS20565	0.14	-0.4
4,595,314	-		HGI48_RS20565	0.14	-0.7
4,595,352	+				-0.7
4,595,352	+		HGI48_RS20565	0.19	-0.9
4,595,563	-		HGI48_RS20565	0.45	-2.3
4,595,608	+		HGI48_RS20565	0.51	-1.4
4,595,608	+		HGI48_RS20565	0.51	-0.7
4,595,648	+		HGI48_RS20565	0.56	+0.2
4,595,649	-		HGI48_RS20565	0.56	+1.2
4,595,715	+		HGI48_RS20565	0.64	-1.4
4,595,745	-		HGI48_RS20565	0.68	+1.2
4,596,007	+				-1.5
4,596,007	+				-0.1
4,596,007	+				-1.3
4,596,007	+				-0.4
4,596,007	+				-0.2
4,596,007	+				+0.9
4,596,007	+				-1.7
4,596,007	+				+0.3
4,596,007	+				-0.7
4,596,008	-				-1.1
4,596,008	-				+0.2
4,596,008	-				-0.7
4,596,008	-				+0.3
4,596,008	-				-0.4
4,596,010	+				-0.7
4,596,010	+				+1.9
4,596,010	+				+0.2
4,596,010	+				-0.8
4,596,010	+				-0.1
4,596,011	-				-0.3
4,596,011	-				-1.4
4,596,011	-				-0.7
4,596,011	-				-1.6
4,596,011	-				-1.2
4,596,011	-				-0.1
4,596,011	-				-1.9
4,596,011	-				+0.7
4,596,011	-				-2.1
4,596,018	+				+0.4
4,596,018	+				+0.9
4,596,018	+				-1.3
4,596,108	+				-1.9
4,596,108	+				+0.9
4,596,109	-				+0.3
4,596,109	-				+0.2
4,596,109	-				-0.3
4,596,109	-				+0.9
4,596,116	+				-1.3
4,596,117	-				-0.5
4,596,117	-				+0.1
4,596,118	+				+1.1
4,596,118	+				+0.2
4,596,118	+				-1.3
4,596,118	+				-0.2
4,596,118	+				+0.5
4,596,118	+				+0.3
4,596,118	+				+0.4
4,596,119	-				+1.6
4,596,119	-				-0.1
4,596,119	-				+0.5
4,596,119	-				-0.4
4,596,119	-				+1.3
4,596,119	-				+0.3
4,596,119	-				-1.7
4,596,119	-				+0.9
4,596,119	-				+0.7
4,596,119	-				-2.1
4,596,119	-				-2.1
4,596,119	-				+1.2
4,596,119	-				-1.1
4,596,119	-				-1.9
4,596,119	-				-1.8
4,596,119	-				+0.4
4,596,131	-				-1.4
4,596,147	+				+0.4
4,596,147	+				+1.3
4,596,147	+				+0.3
4,596,184	+				-1.1
4,596,184	+				+1.2
4,596,184	+				+0.5
4,596,185	-				-1.4
4,596,185	-				-0.9
4,596,185	-				-0.4
4,596,185	-				-1.1
4,596,185	-				-0.1
4,596,185	-				-1.9
4,596,237	+				-0.7
4,596,237	+				+0.3
4,596,238	-				+1.6
4,596,238	-				-2.4
4,596,238	-				-0.4
4,596,238	-				-1.1
4,596,238	-				+1.1
4,596,239	+				-1.1
4,596,239	+				-1.1
4,596,262	-				-1.3
4,596,262	-				-0.4
4,596,345	+				+0.4
4,596,345	+				-1.1
4,596,345	+				-0.5
4,596,365	+		HGI48_RS20570	0.12	+0.2
4,596,366	-		HGI48_RS20570	0.12	-1.9
4,596,375	-		HGI48_RS20570	0.12	-2.9
4,596,417	+		HGI48_RS20570	0.16	+0.1
4,596,417	+		HGI48_RS20570	0.16	-1.2
4,596,418	-		HGI48_RS20570	0.16	-1.6
4,596,418	-		HGI48_RS20570	0.16	+0.3
4,596,437	+		HGI48_RS20570	0.17	-1.1
4,596,437	+		HGI48_RS20570	0.17	-0.2
4,596,437	+		HGI48_RS20570	0.17	+2.3
4,596,437	+		HGI48_RS20570	0.17	+1.3
4,596,438	-		HGI48_RS20570	0.17	+0.4
4,596,474	-		HGI48_RS20570	0.20	-1.2
4,596,480	+		HGI48_RS20570	0.21	-1.6
4,596,480	+		HGI48_RS20570	0.21	-0.5
4,596,528	+				+0.9
4,596,528	+		HGI48_RS20570	0.25	-1.7
4,596,528	+		HGI48_RS20570	0.25	-1.7
4,596,528	+		HGI48_RS20570	0.25	-0.1
4,596,528	+		HGI48_RS20570	0.25	+0.9
4,596,529	-		HGI48_RS20570	0.25	+0.1
4,596,529	-		HGI48_RS20570	0.25	-1.6
4,596,529	-		HGI48_RS20570	0.25	-2.5
4,596,529	-		HGI48_RS20570	0.25	-0.5
4,596,529	-		HGI48_RS20570	0.25	-0.3
4,596,531	+		HGI48_RS20570	0.25	-0.1
4,596,531	+		HGI48_RS20570	0.25	-2.3
4,596,531	+		HGI48_RS20570	0.25	+1.4
4,596,532	-		HGI48_RS20570	0.25	-1.8
4,596,532	-		HGI48_RS20570	0.25	+1.2
4,596,532	-		HGI48_RS20570	0.25	+2.5
4,596,534	-		HGI48_RS20570	0.25	+0.8
4,596,534	-		HGI48_RS20570	0.25	-0.0
4,596,604	+		HGI48_RS20570	0.31	-1.4
4,596,703	+		HGI48_RS20570	0.39	+1.3
4,596,722	+		HGI48_RS20570	0.40	-0.3
4,596,723	-		HGI48_RS20570	0.40	-1.9
4,596,723	-		HGI48_RS20570	0.40	-0.3
4,596,731	+		HGI48_RS20570	0.41	+1.6
4,596,787	+				+1.3
4,596,787	+		HGI48_RS20570	0.46	+1.2
4,596,787	+		HGI48_RS20570	0.46	-0.3
4,596,787	+		HGI48_RS20570	0.46	-2.4
4,596,788	-		HGI48_RS20570	0.46	+0.5
4,596,789	+		HGI48_RS20570	0.46	-1.0
4,596,789	+		HGI48_RS20570	0.46	-0.7
4,596,789	+		HGI48_RS20570	0.46	-2.4
4,596,789	+				+2.2
4,596,789	+		HGI48_RS20570	0.46	+0.1
4,596,789	+		HGI48_RS20570	0.46	-1.9
4,596,790	-		HGI48_RS20570	0.46	+0.1
4,596,790	-		HGI48_RS20570	0.46	-1.9
4,596,790	-				+2.9
4,596,790	-		HGI48_RS20570	0.46	+0.6
4,596,790	-		HGI48_RS20570	0.46	+1.2
4,596,790	-		HGI48_RS20570	0.46	-0.5
4,596,790	-		HGI48_RS20570	0.46	-1.0
4,596,814	+		HGI48_RS20570	0.48	-1.1
4,596,815	-				+1.3
4,596,830	+		HGI48_RS20570	0.49	+1.1
4,596,940	-		HGI48_RS20570	0.58	-0.2
4,596,964	+		HGI48_RS20570	0.60	-0.4
4,596,964	+		HGI48_RS20570	0.60	+0.5
4,596,965	-				+1.9
4,596,965	-		HGI48_RS20570	0.60	-0.5
4,596,967	-		HGI48_RS20570	0.60	-0.2