Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19565 and HGI48_RS19570 are separated by 88 nucleotides HGI48_RS19570 and HGI48_RS19575 are separated by 120 nucleotides HGI48_RS19575 and HGI48_RS19580 are separated by 233 nucleotides
HGI48_RS19565: HGI48_RS19565 - cAMP-activated global transcriptional regulator CRP, at 4,367,409 to 4,368,041
_RS19565
HGI48_RS19570: HGI48_RS19570 - aspartate aminotransferase family protein, at 4,368,130 to 4,369,353
_RS19570
HGI48_RS19575: HGI48_RS19575 - aminodeoxychorismate synthase component II, at 4,369,474 to 4,370,049
_RS19575
HGI48_RS19580: HGI48_RS19580 - helix-turn-helix domain-containing protein, at 4,370,283 to 4,371,488
_RS19580
Position (kb) 4368
4369
4370 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4367.141 kb on + strand at 4367.155 kb on + strand at 4367.216 kb on + strand at 4367.278 kb on - strand at 4367.292 kb on + strand at 4367.292 kb on + strand at 4367.331 kb on + strand at 4367.335 kb on + strand at 4367.335 kb on + strand at 4367.335 kb on + strand at 4368.043 kb on + strand at 4368.043 kb on + strand at 4368.044 kb on - strand at 4368.108 kb on + strand at 4368.142 kb on + strand at 4368.143 kb on - strand at 4368.143 kb on - strand at 4368.145 kb on + strand at 4368.363 kb on + strand, within HGI48_RS19570 at 4368.364 kb on - strand, within HGI48_RS19570 at 4368.444 kb on + strand, within HGI48_RS19570 at 4368.500 kb on + strand, within HGI48_RS19570 at 4368.591 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.630 kb on + strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.631 kb on - strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.632 kb on + strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.633 kb on - strand, within HGI48_RS19570 at 4368.818 kb on - strand, within HGI48_RS19570 at 4368.965 kb on + strand at 4368.965 kb on + strand, within HGI48_RS19570 at 4368.965 kb on + strand, within HGI48_RS19570 at 4369.072 kb on - strand, within HGI48_RS19570 at 4369.110 kb on + strand, within HGI48_RS19570 at 4369.111 kb on - strand, within HGI48_RS19570 at 4369.111 kb on - strand, within HGI48_RS19570 at 4369.111 kb on - strand, within HGI48_RS19570 at 4369.223 kb on + strand, within HGI48_RS19570 at 4369.223 kb on + strand at 4369.223 kb on + strand, within HGI48_RS19570 at 4369.223 kb on + strand, within HGI48_RS19570 at 4369.224 kb on - strand, within HGI48_RS19570 at 4369.224 kb on - strand at 4369.224 kb on - strand, within HGI48_RS19570 at 4369.306 kb on + strand at 4369.316 kb on + strand at 4369.316 kb on + strand at 4369.321 kb on - strand at 4369.321 kb on - strand at 4369.371 kb on + strand at 4369.408 kb on - strand at 4369.475 kb on + strand at 4369.499 kb on - strand at 4369.670 kb on + strand, within HGI48_RS19575 at 4369.887 kb on + strand, within HGI48_RS19575 at 4370.012 kb on + strand at 4370.012 kb on + strand at 4370.012 kb on + strand at 4370.016 kb on + strand at 4370.016 kb on + strand at 4370.017 kb on - strand at 4370.017 kb on - strand at 4370.017 kb on - strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.027 kb on + strand at 4370.028 kb on - strand at 4370.028 kb on - strand at 4370.028 kb on - strand at 4370.028 kb on - strand at 4370.038 kb on - strand at 4370.041 kb on + strand at 4370.041 kb on + strand at 4370.041 kb on + strand at 4370.042 kb on - strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.049 kb on + strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.050 kb on - strand at 4370.059 kb on + strand at 4370.059 kb on + strand at 4370.059 kb on + strand at 4370.059 kb on + strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.060 kb on - strand at 4370.099 kb on + strand at 4370.099 kb on + strand at 4370.099 kb on + strand at 4370.100 kb on - strand at 4370.100 kb on - strand at 4370.103 kb on + strand at 4370.103 kb on + strand at 4370.103 kb on + strand at 4370.103 kb on + strand at 4370.104 kb on - strand at 4370.195 kb on + strand at 4370.195 kb on + strand at 4370.195 kb on + strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.196 kb on - strand at 4370.208 kb on + strand at 4370.352 kb on - strand at 4370.353 kb on + strand at 4370.353 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,367,141 + -1.1 4,367,155 + +0.6 4,367,216 + +0.5 4,367,278 - +2.6 4,367,292 + -0.4 4,367,292 + +0.9 4,367,331 + +2.0 4,367,335 + +1.1 4,367,335 + +1.3 4,367,335 + -0.7 4,368,043 + +0.0 4,368,043 + +1.4 4,368,044 - +0.9 4,368,108 + -0.0 4,368,142 + +0.3 4,368,143 - +1.8 4,368,143 - +0.3 4,368,145 + +0.9 4,368,363 + HGI48_RS19570 0.19 -0.1 4,368,364 - HGI48_RS19570 0.19 +0.1 4,368,444 + HGI48_RS19570 0.26 +0.4 4,368,500 + HGI48_RS19570 0.30 +1.5 4,368,591 + HGI48_RS19570 0.38 +0.1 4,368,630 + HGI48_RS19570 0.41 +0.4 4,368,630 + HGI48_RS19570 0.41 +0.7 4,368,630 + HGI48_RS19570 0.41 -0.7 4,368,630 + HGI48_RS19570 0.41 -1.7 4,368,630 + HGI48_RS19570 0.41 -1.1 4,368,630 + HGI48_RS19570 0.41 -2.1 4,368,630 + HGI48_RS19570 0.41 -2.1 4,368,630 + HGI48_RS19570 0.41 -3.6 4,368,630 + HGI48_RS19570 0.41 -0.2 4,368,631 - HGI48_RS19570 0.41 +0.1 4,368,631 - HGI48_RS19570 0.41 +0.9 4,368,631 - HGI48_RS19570 0.41 -1.1 4,368,631 - HGI48_RS19570 0.41 -0.5 4,368,631 - HGI48_RS19570 0.41 -0.8 4,368,631 - HGI48_RS19570 0.41 -0.5 4,368,632 + HGI48_RS19570 0.41 -0.3 4,368,632 + HGI48_RS19570 0.41 +0.9 4,368,632 + HGI48_RS19570 0.41 -1.3 4,368,632 + HGI48_RS19570 0.41 -0.6 4,368,632 + HGI48_RS19570 0.41 -0.7 4,368,632 + HGI48_RS19570 0.41 -1.0 4,368,632 + HGI48_RS19570 0.41 +1.8 4,368,632 + HGI48_RS19570 0.41 -1.4 4,368,632 + HGI48_RS19570 0.41 -0.4 4,368,632 + HGI48_RS19570 0.41 -1.0 4,368,632 + HGI48_RS19570 0.41 -0.9 4,368,633 - HGI48_RS19570 0.41 -0.9 4,368,633 - HGI48_RS19570 0.41 -0.7 4,368,633 - HGI48_RS19570 0.41 -0.4 4,368,633 - HGI48_RS19570 0.41 +0.2 4,368,633 - HGI48_RS19570 0.41 -1.9 4,368,633 - HGI48_RS19570 0.41 +0.1 4,368,818 - HGI48_RS19570 0.56 -1.1 4,368,965 + +0.9 4,368,965 + HGI48_RS19570 0.68 +0.7 4,368,965 + HGI48_RS19570 0.68 +0.4 4,369,072 - HGI48_RS19570 0.77 -1.9 4,369,110 + HGI48_RS19570 0.80 -0.1 4,369,111 - HGI48_RS19570 0.80 +0.9 4,369,111 - HGI48_RS19570 0.80 -1.1 4,369,111 - HGI48_RS19570 0.80 -0.7 4,369,223 + HGI48_RS19570 0.89 +0.1 4,369,223 + +2.1 4,369,223 + HGI48_RS19570 0.89 +1.5 4,369,223 + HGI48_RS19570 0.89 -1.1 4,369,224 - HGI48_RS19570 0.89 -2.1 4,369,224 - +0.9 4,369,224 - HGI48_RS19570 0.89 +1.4 4,369,306 + -1.4 4,369,316 + +0.1 4,369,316 + -2.1 4,369,321 - +0.0 4,369,321 - -0.7 4,369,371 + -0.6 4,369,408 - +0.5 4,369,475 + +0.3 4,369,499 - +0.9 4,369,670 + HGI48_RS19575 0.34 -2.1 4,369,887 + HGI48_RS19575 0.72 -0.6 4,370,012 + +0.9 4,370,012 + -0.4 4,370,012 + -1.7 4,370,016 + +0.5 4,370,016 + -1.1 4,370,017 - +0.8 4,370,017 - +0.3 4,370,017 - +0.9 4,370,027 + -0.4 4,370,027 + +1.1 4,370,027 + +0.0 4,370,027 + +0.1 4,370,027 + +1.1 4,370,028 - +1.9 4,370,028 - -0.5 4,370,028 - -1.9 4,370,028 - +0.9 4,370,038 - +2.5 4,370,041 + -0.5 4,370,041 + -1.0 4,370,041 + +1.9 4,370,042 - -1.7 4,370,049 + +0.1 4,370,049 + -0.3 4,370,049 + -1.4 4,370,049 + -0.3 4,370,049 + +1.4 4,370,050 - -0.1 4,370,050 - +0.1 4,370,050 - +0.3 4,370,050 - -0.1 4,370,050 - +0.5 4,370,059 + -0.7 4,370,059 + -2.4 4,370,059 + -0.7 4,370,059 + +0.4 4,370,060 - -1.1 4,370,060 - +1.1 4,370,060 - +2.3 4,370,060 - -0.1 4,370,060 - +0.1 4,370,099 + -1.1 4,370,099 + +1.1 4,370,099 + +1.1 4,370,100 - -0.3 4,370,100 - -0.7 4,370,103 + -1.4 4,370,103 + +0.3 4,370,103 + +1.9 4,370,103 + +0.1 4,370,104 - -0.1 4,370,195 + +1.7 4,370,195 + -0.4 4,370,195 + +0.9 4,370,196 - -0.2 4,370,196 - -0.3 4,370,196 - -0.7 4,370,196 - +1.4 4,370,196 - -2.1 4,370,208 + -0.2 4,370,352 - -1.1 4,370,353 + +2.2 4,370,353 + -0.9
Or see this region's nucleotide sequence