Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS19020 and HGI48_RS19025 are separated by 312 nucleotides HGI48_RS19025 and HGI48_RS19030 are separated by 209 nucleotides HGI48_RS19030 and HGI48_RS19035 are separated by 180 nucleotides
HGI48_RS19020: HGI48_RS19020 - glutathione S-transferase family protein, at 4,269,257 to 4,269,931
_RS19020
HGI48_RS19025: HGI48_RS19025 - transposase, at 4,270,244 to 4,270,818
_RS19025
HGI48_RS19030: HGI48_RS19030 - tRNA-Gly, at 4,271,028 to 4,271,103
_RS19030
HGI48_RS19035: HGI48_RS19035 - oligoribonuclease, at 4,271,284 to 4,271,826
_RS19035
Position (kb) 4270
4271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4269.263 kb on - strand at 4269.263 kb on - strand at 4269.263 kb on - strand at 4269.283 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.294 kb on + strand at 4269.295 kb on - strand at 4269.295 kb on - strand at 4269.295 kb on - strand at 4269.295 kb on - strand at 4269.363 kb on + strand, within HGI48_RS19020 at 4269.363 kb on + strand at 4269.364 kb on - strand, within HGI48_RS19020 at 4269.364 kb on - strand, within HGI48_RS19020 at 4269.364 kb on - strand, within HGI48_RS19020 at 4269.364 kb on - strand, within HGI48_RS19020 at 4269.369 kb on + strand, within HGI48_RS19020 at 4269.370 kb on - strand, within HGI48_RS19020 at 4269.370 kb on - strand, within HGI48_RS19020 at 4269.428 kb on - strand, within HGI48_RS19020 at 4269.460 kb on + strand at 4269.521 kb on + strand at 4269.521 kb on + strand, within HGI48_RS19020 at 4269.522 kb on - strand, within HGI48_RS19020 at 4269.522 kb on - strand, within HGI48_RS19020 at 4269.537 kb on + strand, within HGI48_RS19020 at 4269.537 kb on + strand at 4269.537 kb on + strand, within HGI48_RS19020 at 4269.537 kb on + strand, within HGI48_RS19020 at 4269.540 kb on + strand, within HGI48_RS19020 at 4269.540 kb on + strand, within HGI48_RS19020 at 4269.541 kb on - strand, within HGI48_RS19020 at 4269.574 kb on + strand, within HGI48_RS19020 at 4269.574 kb on + strand, within HGI48_RS19020 at 4269.574 kb on + strand, within HGI48_RS19020 at 4269.574 kb on + strand, within HGI48_RS19020 at 4269.574 kb on + strand, within HGI48_RS19020 at 4269.607 kb on - strand, within HGI48_RS19020 at 4269.670 kb on + strand, within HGI48_RS19020 at 4269.670 kb on + strand, within HGI48_RS19020 at 4269.670 kb on + strand, within HGI48_RS19020 at 4269.670 kb on + strand, within HGI48_RS19020 at 4269.670 kb on + strand, within HGI48_RS19020 at 4269.671 kb on - strand, within HGI48_RS19020 at 4269.671 kb on - strand at 4269.690 kb on + strand, within HGI48_RS19020 at 4269.719 kb on - strand, within HGI48_RS19020 at 4269.721 kb on + strand, within HGI48_RS19020 at 4269.722 kb on - strand, within HGI48_RS19020 at 4269.737 kb on + strand, within HGI48_RS19020 at 4269.737 kb on + strand, within HGI48_RS19020 at 4269.738 kb on - strand, within HGI48_RS19020 at 4269.781 kb on - strand, within HGI48_RS19020 at 4269.852 kb on + strand at 4269.852 kb on + strand, within HGI48_RS19020 at 4269.864 kb on + strand at 4269.864 kb on + strand at 4269.875 kb on + strand at 4269.875 kb on + strand at 4269.876 kb on - strand at 4269.939 kb on - strand at 4269.939 kb on - strand at 4269.939 kb on - strand at 4269.957 kb on + strand at 4269.957 kb on + strand at 4269.957 kb on + strand at 4269.957 kb on + strand at 4269.957 kb on + strand at 4269.957 kb on + strand at 4269.958 kb on - strand at 4269.958 kb on - strand at 4269.961 kb on + strand at 4269.961 kb on + strand at 4269.963 kb on + strand at 4269.963 kb on + strand at 4269.963 kb on + strand at 4269.963 kb on + strand at 4269.964 kb on - strand at 4270.033 kb on + strand at 4270.050 kb on + strand at 4270.053 kb on + strand at 4270.054 kb on - strand at 4270.067 kb on + strand at 4270.068 kb on - strand at 4270.072 kb on + strand at 4270.128 kb on + strand at 4270.128 kb on + strand at 4270.129 kb on - strand at 4270.163 kb on - strand at 4270.212 kb on + strand at 4270.212 kb on + strand at 4270.212 kb on + strand at 4270.212 kb on + strand at 4270.216 kb on + strand at 4270.217 kb on - strand at 4270.225 kb on - strand at 4270.245 kb on + strand at 4270.246 kb on - strand at 4270.246 kb on - strand at 4270.266 kb on + strand at 4270.267 kb on - strand at 4270.324 kb on + strand, within HGI48_RS19025 at 4270.331 kb on - strand, within HGI48_RS19025 at 4270.333 kb on - strand, within HGI48_RS19025 at 4270.333 kb on - strand at 4270.386 kb on + strand, within HGI48_RS19025 at 4270.387 kb on - strand at 4270.526 kb on - strand, within HGI48_RS19025 at 4270.526 kb on - strand, within HGI48_RS19025 at 4270.526 kb on - strand, within HGI48_RS19025 at 4270.526 kb on - strand, within HGI48_RS19025 at 4270.579 kb on + strand, within HGI48_RS19025 at 4270.582 kb on + strand, within HGI48_RS19025 at 4270.582 kb on + strand, within HGI48_RS19025 at 4270.842 kb on + strand at 4270.842 kb on + strand at 4270.930 kb on - strand at 4270.930 kb on - strand at 4270.973 kb on - strand at 4270.994 kb on + strand at 4270.995 kb on - strand at 4271.006 kb on + strand at 4271.017 kb on - strand at 4271.017 kb on - strand at 4271.023 kb on + strand at 4271.023 kb on + strand at 4271.024 kb on - strand at 4271.095 kb on + strand, within HGI48_RS19030 at 4271.095 kb on + strand, within HGI48_RS19030 at 4271.127 kb on + strand at 4271.154 kb on + strand at 4271.154 kb on + strand at 4271.237 kb on - strand at 4271.286 kb on - strand at 4271.296 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,269,263 - +0.7 4,269,263 - +0.2 4,269,263 - +0.9 4,269,283 + -0.3 4,269,294 + -0.7 4,269,294 + +1.6 4,269,294 + +0.5 4,269,294 + +1.3 4,269,294 + +0.2 4,269,294 + -0.4 4,269,294 + -3.2 4,269,294 + -2.3 4,269,295 - -0.8 4,269,295 - +0.7 4,269,295 - -1.6 4,269,295 - -1.7 4,269,363 + HGI48_RS19020 0.16 +1.2 4,269,363 + +0.9 4,269,364 - HGI48_RS19020 0.16 -2.4 4,269,364 - HGI48_RS19020 0.16 +0.1 4,269,364 - HGI48_RS19020 0.16 -1.9 4,269,364 - HGI48_RS19020 0.16 -0.8 4,269,369 + HGI48_RS19020 0.17 -0.8 4,269,370 - HGI48_RS19020 0.17 +0.6 4,269,370 - HGI48_RS19020 0.17 -3.5 4,269,428 - HGI48_RS19020 0.25 +0.5 4,269,460 + -0.7 4,269,521 + -0.7 4,269,521 + HGI48_RS19020 0.39 -1.1 4,269,522 - HGI48_RS19020 0.39 -0.2 4,269,522 - HGI48_RS19020 0.39 +1.0 4,269,537 + HGI48_RS19020 0.41 -1.1 4,269,537 + -0.7 4,269,537 + HGI48_RS19020 0.41 +0.0 4,269,537 + HGI48_RS19020 0.41 -0.1 4,269,540 + HGI48_RS19020 0.42 -0.0 4,269,540 + HGI48_RS19020 0.42 -1.3 4,269,541 - HGI48_RS19020 0.42 -0.4 4,269,574 + HGI48_RS19020 0.47 +0.4 4,269,574 + HGI48_RS19020 0.47 -0.1 4,269,574 + HGI48_RS19020 0.47 -1.1 4,269,574 + HGI48_RS19020 0.47 +1.0 4,269,574 + HGI48_RS19020 0.47 +0.9 4,269,607 - HGI48_RS19020 0.52 -1.8 4,269,670 + HGI48_RS19020 0.61 -0.2 4,269,670 + HGI48_RS19020 0.61 +0.4 4,269,670 + HGI48_RS19020 0.61 -0.8 4,269,670 + HGI48_RS19020 0.61 -0.1 4,269,670 + HGI48_RS19020 0.61 -0.5 4,269,671 - HGI48_RS19020 0.61 -1.4 4,269,671 - +1.9 4,269,690 + HGI48_RS19020 0.64 -0.5 4,269,719 - HGI48_RS19020 0.68 -1.9 4,269,721 + HGI48_RS19020 0.69 +0.8 4,269,722 - HGI48_RS19020 0.69 -0.5 4,269,737 + HGI48_RS19020 0.71 +0.9 4,269,737 + HGI48_RS19020 0.71 -1.1 4,269,738 - HGI48_RS19020 0.71 +0.5 4,269,781 - HGI48_RS19020 0.78 -0.4 4,269,852 + +1.5 4,269,852 + HGI48_RS19020 0.88 +1.0 4,269,864 + -0.1 4,269,864 + +1.2 4,269,875 + -0.7 4,269,875 + +1.5 4,269,876 - +1.4 4,269,939 - -1.4 4,269,939 - -0.5 4,269,939 - +2.3 4,269,957 + +1.3 4,269,957 + +1.5 4,269,957 + -0.6 4,269,957 + -2.4 4,269,957 + -1.9 4,269,957 + +0.7 4,269,958 - -1.4 4,269,958 - +1.1 4,269,961 + +0.2 4,269,961 + -0.1 4,269,963 + -1.7 4,269,963 + +0.6 4,269,963 + -0.4 4,269,963 + -0.7 4,269,964 - -1.1 4,270,033 + -0.9 4,270,050 + -1.4 4,270,053 + -0.1 4,270,054 - -1.1 4,270,067 + +0.3 4,270,068 - +0.5 4,270,072 + +0.2 4,270,128 + -1.7 4,270,128 + -0.1 4,270,129 - +1.1 4,270,163 - +0.8 4,270,212 + +1.1 4,270,212 + +0.1 4,270,212 + -0.4 4,270,212 + -0.9 4,270,216 + -0.1 4,270,217 - +0.0 4,270,225 - -0.1 4,270,245 + +1.3 4,270,246 - +0.5 4,270,246 - -1.4 4,270,266 + -0.4 4,270,267 - -0.4 4,270,324 + HGI48_RS19025 0.14 +1.1 4,270,331 - HGI48_RS19025 0.15 +0.9 4,270,333 - HGI48_RS19025 0.15 -0.3 4,270,333 - +1.6 4,270,386 + HGI48_RS19025 0.25 -0.1 4,270,387 - +1.3 4,270,526 - HGI48_RS19025 0.49 -1.1 4,270,526 - HGI48_RS19025 0.49 +0.4 4,270,526 - HGI48_RS19025 0.49 +0.3 4,270,526 - HGI48_RS19025 0.49 -0.4 4,270,579 + HGI48_RS19025 0.58 -0.4 4,270,582 + HGI48_RS19025 0.59 -0.5 4,270,582 + HGI48_RS19025 0.59 +0.3 4,270,842 + -0.0 4,270,842 + +0.7 4,270,930 - +0.5 4,270,930 - +0.9 4,270,973 - -2.7 4,270,994 + -0.4 4,270,995 - +0.1 4,271,006 + -0.6 4,271,017 - +0.9 4,271,017 - +0.9 4,271,023 + -1.9 4,271,023 + -0.6 4,271,024 - +0.9 4,271,095 + HGI48_RS19030 0.88 -1.1 4,271,095 + HGI48_RS19030 0.88 -1.7 4,271,127 + +0.6 4,271,154 + -0.5 4,271,154 + +0.3 4,271,237 - -0.6 4,271,286 - -0.3 4,271,296 - +0.6
Or see this region's nucleotide sequence