Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18955

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,255,029	+		HGI48_RS18950	0.26	+0.5
4,255,029	+		HGI48_RS18950	0.26	+0.2
4,255,030	-		HGI48_RS18950	0.26	+0.4
4,255,113	+		HGI48_RS18950	0.35	-0.7
4,255,113	+		HGI48_RS18950	0.35	-1.8
4,255,113	+		HGI48_RS18950	0.35	-1.3
4,255,114	-		HGI48_RS18950	0.35	-2.0
4,255,116	+		HGI48_RS18950	0.36	-2.4
4,255,116	+		HGI48_RS18950	0.36	+0.6
4,255,117	-		HGI48_RS18950	0.36	+0.1
4,255,117	-		HGI48_RS18950	0.36	+0.2
4,255,117	-		HGI48_RS18950	0.36	+0.9
4,255,117	-		HGI48_RS18950	0.36	+1.1
4,255,117	-		HGI48_RS18950	0.36	+0.2
4,255,208	+		HGI48_RS18950	0.46	-0.0
4,255,208	+		HGI48_RS18950	0.46	+0.1
4,255,209	-		HGI48_RS18950	0.46	-0.4
4,255,253	+		HGI48_RS18950	0.51	-1.9
4,255,253	+		HGI48_RS18950	0.51	-0.2
4,255,303	-		HGI48_RS18950	0.56	+0.0
4,255,344	+		HGI48_RS18950	0.61	+0.5
4,255,371	-				+1.9
4,255,381	+		HGI48_RS18950	0.65	-2.4
4,255,468	+		HGI48_RS18950	0.75	-0.9
4,255,468	+		HGI48_RS18950	0.75	-1.9
4,255,469	-		HGI48_RS18950	0.75	+0.8
4,255,489	+		HGI48_RS18950	0.77	-1.1
4,255,490	-		HGI48_RS18950	0.77	-0.3
4,255,505	+		HGI48_RS18950	0.79	-1.1
4,255,506	-		HGI48_RS18950	0.79	+0.6
4,255,540	+		HGI48_RS18950	0.83	-0.5
4,255,540	+		HGI48_RS18950	0.83	-0.4
4,255,556	-		HGI48_RS18950	0.84	-1.4
4,255,556	-		HGI48_RS18950	0.84	+0.6
4,255,568	+		HGI48_RS18950	0.86	-1.1
4,255,568	+		HGI48_RS18950	0.86	-0.7
4,255,568	+		HGI48_RS18950	0.86	-0.1
4,255,568	+		HGI48_RS18950	0.86	+1.7
4,255,568	+		HGI48_RS18950	0.86	-1.1
4,255,568	+		HGI48_RS18950	0.86	-0.5
4,255,568	+		HGI48_RS18950	0.86	+1.3
4,255,568	+				+2.2
4,255,568	+		HGI48_RS18950	0.86	-1.4
4,255,568	+		HGI48_RS18950	0.86	+0.5
4,255,568	+		HGI48_RS18950	0.86	+0.7
4,255,568	+		HGI48_RS18950	0.86	+0.3
4,255,568	+		HGI48_RS18950	0.86	-0.4
4,255,568	+		HGI48_RS18950	0.86	+0.3
4,255,569	-		HGI48_RS18950	0.86	-1.2
4,255,569	-		HGI48_RS18950	0.86	-1.9
4,255,569	-		HGI48_RS18950	0.86	-1.6
4,255,569	-		HGI48_RS18950	0.86	+0.2
4,255,569	-		HGI48_RS18950	0.86	-0.1
4,255,569	-		HGI48_RS18950	0.86	-2.1
4,255,569	-		HGI48_RS18950	0.86	+0.3
4,255,569	-		HGI48_RS18950	0.86	-0.7
4,255,570	+		HGI48_RS18950	0.86	-0.2
4,255,570	+		HGI48_RS18950	0.86	+1.1
4,255,570	+		HGI48_RS18950	0.86	+0.8
4,255,570	+		HGI48_RS18950	0.86	+0.9
4,255,570	+		HGI48_RS18950	0.86	-0.8
4,255,570	+		HGI48_RS18950	0.86	-1.9
4,255,571	-		HGI48_RS18950	0.86	-0.3
4,255,571	-		HGI48_RS18950	0.86	+0.5
4,255,571	-		HGI48_RS18950	0.86	+0.1
4,255,571	-		HGI48_RS18950	0.86	-0.1
4,255,571	-		HGI48_RS18950	0.86	+2.2
4,255,571	-		HGI48_RS18950	0.86	+0.1
4,255,571	-		HGI48_RS18950	0.86	+0.9
4,255,581	-		HGI48_RS18950	0.87	-0.1
4,255,586	+		HGI48_RS18950	0.88	-1.7
4,255,586	+		HGI48_RS18950	0.88	-0.4
4,255,586	+		HGI48_RS18950	0.88	+0.2
4,255,586	+		HGI48_RS18950	0.88	-0.2
4,255,586	+		HGI48_RS18950	0.88	-2.6
4,255,586	+		HGI48_RS18950	0.88	-0.6
4,255,586	+		HGI48_RS18950	0.88	-1.9
4,255,587	-		HGI48_RS18950	0.88	-1.7
4,255,587	-		HGI48_RS18950	0.88	-0.7
4,255,587	-		HGI48_RS18950	0.88	+0.8
4,255,588	+		HGI48_RS18950	0.88	-1.7
4,255,588	+		HGI48_RS18950	0.88	+0.4
4,255,588	+		HGI48_RS18950	0.88	+1.2
4,255,588	+		HGI48_RS18950	0.88	+0.2
4,255,588	+		HGI48_RS18950	0.88	-0.1
4,255,588	+		HGI48_RS18950	0.88	+0.9
4,255,588	+		HGI48_RS18950	0.88	-0.1
4,255,588	+				-0.7
4,255,588	+		HGI48_RS18950	0.88	-0.2
4,255,589	-		HGI48_RS18950	0.88	+0.9
4,255,589	-		HGI48_RS18950	0.88	-2.7
4,255,589	-		HGI48_RS18950	0.88	-0.7
4,255,589	-		HGI48_RS18950	0.88	-1.2
4,255,642	-				-0.2
4,255,670	+				-0.4
4,255,697	+				+1.9
4,255,697	+				-1.0
4,255,697	+				+0.3
4,255,697	+				+0.1
4,255,697	+				+2.5
4,255,698	-				-1.1
4,255,698	-				-0.9
4,255,698	-				-0.6
4,255,720	-				+1.3
4,255,754	+				+1.6
4,255,755	-				-0.3
4,255,760	+				-2.2
4,255,760	+				-1.3
4,255,760	+				-2.1
4,255,761	-				-1.1
4,255,761	-				-0.1
4,255,795	-				-0.8
4,255,795	-				+0.4
4,255,829	-				+0.3
4,255,847	-				-0.3
4,255,899	+				-1.6
4,255,902	+				+0.1
4,255,917	+				+0.2
4,255,917	+				+0.3
4,255,921	+				-1.2
4,255,921	+				+0.6
4,255,921	+				-0.8
4,255,922	-				-2.3
4,255,925	+				+0.9
4,255,926	-				+1.3
4,255,932	+				-0.1
4,256,119	+				-0.1
4,256,248	-		HGI48_RS18955	0.13	+0.9
4,256,335	+		HGI48_RS18955	0.17	-0.4
4,256,335	+		HGI48_RS18955	0.17	-1.9
4,256,335	+		HGI48_RS18955	0.17	-1.3
4,256,336	-		HGI48_RS18955	0.17	-0.6
4,256,336	-		HGI48_RS18955	0.17	-0.1
4,256,692	+		HGI48_RS18955	0.34	-0.2
4,256,692	+		HGI48_RS18955	0.34	+0.6
4,256,692	+		HGI48_RS18955	0.34	-0.5
4,256,692	+		HGI48_RS18955	0.34	-0.1
4,256,692	+		HGI48_RS18955	0.34	-1.3
4,256,693	-		HGI48_RS18955	0.34	+0.1
4,256,693	-		HGI48_RS18955	0.34	-1.4
4,256,693	-		HGI48_RS18955	0.34	-2.6
4,256,693	-		HGI48_RS18955	0.34	-0.1
4,256,693	-		HGI48_RS18955	0.34	-0.9
4,256,693	-		HGI48_RS18955	0.34	+1.6
4,256,693	-		HGI48_RS18955	0.34	-1.1
4,256,693	-		HGI48_RS18955	0.34	-1.3
4,256,693	-		HGI48_RS18955	0.34	-1.7
4,256,693	-		HGI48_RS18955	0.34	+0.5
4,256,693	-		HGI48_RS18955	0.34	+0.9
4,256,694	+				+1.9
4,256,694	+		HGI48_RS18955	0.34	+0.3
4,256,694	+		HGI48_RS18955	0.34	-0.1
4,256,694	+		HGI48_RS18955	0.34	-0.4
4,256,695	-		HGI48_RS18955	0.34	+0.2
4,256,695	-		HGI48_RS18955	0.34	-1.4
4,256,695	-		HGI48_RS18955	0.34	-1.4
4,256,695	-		HGI48_RS18955	0.34	-0.4
4,256,695	-		HGI48_RS18955	0.34	+0.5
4,256,703	+		HGI48_RS18955	0.35	-1.0
4,256,725	+		HGI48_RS18955	0.36	-0.0
4,256,725	+		HGI48_RS18955	0.36	+0.9
4,256,725	+				+0.3
4,256,725	+		HGI48_RS18955	0.36	-0.5
4,256,726	-		HGI48_RS18955	0.36	-2.6
4,256,726	-		HGI48_RS18955	0.36	+0.4
4,256,876	+		HGI48_RS18955	0.43	-1.1
4,256,876	+		HGI48_RS18955	0.43	-0.8
4,256,876	+		HGI48_RS18955	0.43	-0.6
4,256,876	+		HGI48_RS18955	0.43	+0.4
4,256,878	+		HGI48_RS18955	0.43	-0.5
4,256,878	+		HGI48_RS18955	0.43	-2.6
4,256,878	+		HGI48_RS18955	0.43	+0.5
4,256,878	+		HGI48_RS18955	0.43	-1.5
4,256,878	+		HGI48_RS18955	0.43	-0.1
4,256,878	+		HGI48_RS18955	0.43	+0.2
4,256,878	+		HGI48_RS18955	0.43	+0.5
4,256,879	-		HGI48_RS18955	0.43	-0.4
4,256,879	-		HGI48_RS18955	0.43	+1.7
4,256,879	-		HGI48_RS18955	0.43	-1.0
4,256,879	-		HGI48_RS18955	0.43	-0.5
4,256,879	-		HGI48_RS18955	0.43	+0.6
4,256,879	-		HGI48_RS18955	0.43	-0.2
4,256,879	-		HGI48_RS18955	0.43	-1.4
4,256,879	-		HGI48_RS18955	0.43	+0.2
4,256,906	+		HGI48_RS18955	0.44	-1.4
4,256,907	-		HGI48_RS18955	0.45	-0.1
4,256,907	-		HGI48_RS18955	0.45	-2.1
4,256,954	+		HGI48_RS18955	0.47	-0.5
4,256,955	-		HGI48_RS18955	0.47	+0.2
4,256,965	+		HGI48_RS18955	0.47	+1.7
4,256,965	+		HGI48_RS18955	0.47	+0.1
4,256,965	+		HGI48_RS18955	0.47	-0.9
4,256,966	-		HGI48_RS18955	0.47	+0.9
4,256,966	-		HGI48_RS18955	0.47	-0.1
4,256,966	-		HGI48_RS18955	0.47	+1.7
4,257,019	+		HGI48_RS18955	0.50	-2.4
4,257,019	+		HGI48_RS18955	0.50	+0.3
4,257,020	-		HGI48_RS18955	0.50	+0.6
4,257,020	-		HGI48_RS18955	0.50	+0.2
4,257,027	+		HGI48_RS18955	0.50	+0.2
4,257,124	+		HGI48_RS18955	0.55	+0.6
4,257,124	+		HGI48_RS18955	0.55	-0.2
4,257,125	-		HGI48_RS18955	0.55	+2.4
4,257,175	+		HGI48_RS18955	0.57	+0.5
4,257,397	+		HGI48_RS18955	0.68	+2.0
4,257,397	+		HGI48_RS18955	0.68	+0.4
4,257,398	-		HGI48_RS18955	0.68	-0.2
4,257,398	-		HGI48_RS18955	0.68	-0.7
4,257,398	-		HGI48_RS18955	0.68	+1.5
4,257,467	+		HGI48_RS18955	0.71	+0.5
4,257,468	-		HGI48_RS18955	0.71	-0.5
4,257,566	+		HGI48_RS18955	0.76	-1.1
4,257,566	+		HGI48_RS18955	0.76	-1.1
4,257,566	+		HGI48_RS18955	0.76	+0.5
4,257,567	-		HGI48_RS18955	0.76	+1.2
4,257,568	+		HGI48_RS18955	0.76	-0.4
4,257,627	+		HGI48_RS18955	0.79	-0.2
4,257,627	+		HGI48_RS18955	0.79	+0.0
4,257,627	+		HGI48_RS18955	0.79	-0.8
4,257,628	-		HGI48_RS18955	0.79	-1.3
4,257,628	-		HGI48_RS18955	0.79	-0.1
4,257,628	-		HGI48_RS18955	0.79	-0.9
4,257,628	-		HGI48_RS18955	0.79	+0.3
4,257,649	+				+0.9
4,257,649	+				+0.9
4,257,721	+		HGI48_RS18955	0.83	+0.1
4,257,721	+				-0.7
4,257,721	+		HGI48_RS18955	0.83	-0.1
4,257,722	-		HGI48_RS18955	0.83	-0.0
4,257,722	-				+2.1
4,257,722	-		HGI48_RS18955	0.83	-0.7
4,257,722	-		HGI48_RS18955	0.83	-1.9
4,257,778	+		HGI48_RS18955	0.86	+0.9
4,257,779	-		HGI48_RS18955	0.86	-0.8
4,257,967	+				-0.1
4,257,968	-				+1.8
4,258,059	-				-0.5
4,258,091	+				+0.9
4,258,091	+				-0.7
4,258,137	+				+0.4
4,258,137	+				-1.7
4,258,138	-				-1.6
4,258,327	+				-0.7
4,258,327	+		HGI48_RS18960	0.18	-2.2
4,258,327	+				-0.7
4,258,330	+		HGI48_RS18960	0.18	-1.1
4,258,330	+		HGI48_RS18960	0.18	+0.2
4,258,330	+		HGI48_RS18960	0.18	+0.5
4,258,331	-		HGI48_RS18960	0.18	+1.5
4,258,331	-		HGI48_RS18960	0.18	-0.3
4,258,331	-		HGI48_RS18960	0.18	+0.9
4,258,627	-		HGI48_RS18960	0.41	+0.5
4,258,679	+		HGI48_RS18960	0.45	-1.0
4,258,679	+		HGI48_RS18960	0.45	+0.6
4,258,687	+				+0.3
4,258,688	-		HGI48_RS18960	0.45	-1.7
4,258,748	+		HGI48_RS18960	0.50	-1.1
4,258,748	+		HGI48_RS18960	0.50	-1.8
4,258,748	+		HGI48_RS18960	0.50	-1.4
4,258,748	+		HGI48_RS18960	0.50	+0.7
4,258,748	+		HGI48_RS18960	0.50	+0.9
4,258,749	-		HGI48_RS18960	0.50	-1.1
4,258,749	-		HGI48_RS18960	0.50	-2.1
4,258,749	-		HGI48_RS18960	0.50	+0.2
4,258,749	-		HGI48_RS18960	0.50	+0.7
4,258,840	+		HGI48_RS18960	0.57	+1.3
4,259,038	+		HGI48_RS18960	0.72	-0.3
4,259,038	+		HGI48_RS18960	0.72	+0.6
4,259,039	-		HGI48_RS18960	0.72	+0.7