Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18850 and HGI48_RS18855 are separated by 11 nucleotides HGI48_RS18855 and HGI48_RS18860 are separated by 35 nucleotides
HGI48_RS18850: HGI48_RS18850 - homocitrate synthase, at 4,226,135 to 4,227,283
_RS18850
HGI48_RS18855: HGI48_RS18855 - cysteine desulfurase NifS, at 4,227,295 to 4,228,557
_RS18855
HGI48_RS18860: HGI48_RS18860 - Fe-S cluster assembly protein NifU, at 4,228,593 to 4,229,438
_RS18860
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4226.388 kb on + strand, within HGI48_RS18850 at 4226.389 kb on - strand, within HGI48_RS18850 at 4226.389 kb on - strand, within HGI48_RS18850 at 4226.389 kb on - strand, within HGI48_RS18850 at 4226.389 kb on - strand, within HGI48_RS18850 at 4226.389 kb on - strand, within HGI48_RS18850 at 4226.424 kb on - strand, within HGI48_RS18850 at 4226.471 kb on + strand, within HGI48_RS18850 at 4226.471 kb on + strand, within HGI48_RS18850 at 4226.472 kb on - strand, within HGI48_RS18850 at 4226.472 kb on - strand, within HGI48_RS18850 at 4226.472 kb on - strand, within HGI48_RS18850 at 4226.472 kb on - strand, within HGI48_RS18850 at 4226.472 kb on - strand, within HGI48_RS18850 at 4227.007 kb on + strand, within HGI48_RS18850 at 4227.007 kb on + strand, within HGI48_RS18850 at 4227.007 kb on + strand, within HGI48_RS18850 at 4227.007 kb on + strand, within HGI48_RS18850 at 4227.008 kb on - strand, within HGI48_RS18850 at 4227.008 kb on - strand, within HGI48_RS18850 at 4227.008 kb on - strand, within HGI48_RS18850 at 4227.008 kb on - strand, within HGI48_RS18850 at 4227.008 kb on - strand, within HGI48_RS18850 at 4227.008 kb on - strand, within HGI48_RS18850 at 4227.011 kb on + strand, within HGI48_RS18850 at 4227.011 kb on + strand, within HGI48_RS18850 at 4227.011 kb on + strand, within HGI48_RS18850 at 4227.302 kb on + strand at 4227.302 kb on + strand at 4227.302 kb on + strand at 4227.302 kb on + strand at 4227.302 kb on + strand at 4227.303 kb on - strand at 4227.303 kb on - strand at 4227.410 kb on + strand at 4227.410 kb on + strand at 4227.411 kb on - strand at 4227.411 kb on - strand at 4227.434 kb on + strand, within HGI48_RS18855 at 4227.434 kb on + strand, within HGI48_RS18855 at 4227.434 kb on + strand, within HGI48_RS18855 at 4227.476 kb on + strand, within HGI48_RS18855 at 4227.476 kb on + strand, within HGI48_RS18855 at 4227.612 kb on + strand, within HGI48_RS18855 at 4227.613 kb on - strand, within HGI48_RS18855 at 4227.613 kb on - strand, within HGI48_RS18855 at 4227.613 kb on - strand, within HGI48_RS18855 at 4227.621 kb on + strand, within HGI48_RS18855 at 4227.739 kb on + strand, within HGI48_RS18855 at 4227.739 kb on + strand, within HGI48_RS18855 at 4227.740 kb on - strand, within HGI48_RS18855 at 4227.740 kb on - strand, within HGI48_RS18855 at 4227.740 kb on - strand, within HGI48_RS18855 at 4227.775 kb on + strand, within HGI48_RS18855 at 4227.786 kb on + strand, within HGI48_RS18855 at 4227.866 kb on + strand, within HGI48_RS18855 at 4227.866 kb on + strand, within HGI48_RS18855 at 4227.866 kb on + strand, within HGI48_RS18855 at 4227.867 kb on - strand, within HGI48_RS18855 at 4227.991 kb on + strand, within HGI48_RS18855 at 4227.992 kb on - strand, within HGI48_RS18855 at 4227.992 kb on - strand, within HGI48_RS18855 at 4228.096 kb on + strand, within HGI48_RS18855 at 4228.158 kb on + strand, within HGI48_RS18855 at 4228.158 kb on + strand, within HGI48_RS18855 at 4228.158 kb on + strand at 4228.159 kb on - strand, within HGI48_RS18855 at 4228.159 kb on - strand, within HGI48_RS18855 at 4228.159 kb on - strand, within HGI48_RS18855 at 4228.160 kb on + strand, within HGI48_RS18855 at 4228.160 kb on + strand, within HGI48_RS18855 at 4228.161 kb on - strand, within HGI48_RS18855 at 4228.161 kb on - strand, within HGI48_RS18855 at 4228.161 kb on - strand at 4228.416 kb on - strand, within HGI48_RS18855 at 4228.490 kb on + strand at 4228.594 kb on + strand at 4228.595 kb on - strand at 4228.613 kb on + strand at 4228.613 kb on + strand at 4228.614 kb on - strand at 4228.614 kb on - strand at 4228.614 kb on - strand at 4228.614 kb on - strand at 4228.614 kb on - strand at 4228.615 kb on + strand at 4228.615 kb on + strand at 4228.615 kb on + strand at 4228.615 kb on + strand at 4228.615 kb on + strand at 4228.615 kb on + strand at 4228.615 kb on + strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.616 kb on - strand at 4228.742 kb on + strand, within HGI48_RS18860 at 4228.742 kb on + strand, within HGI48_RS18860 at 4228.743 kb on - strand, within HGI48_RS18860 at 4228.743 kb on - strand, within HGI48_RS18860 at 4228.822 kb on - strand, within HGI48_RS18860 at 4228.945 kb on + strand, within HGI48_RS18860 at 4228.945 kb on + strand at 4228.946 kb on - strand, within HGI48_RS18860 at 4229.027 kb on + strand, within HGI48_RS18860 at 4229.027 kb on + strand, within HGI48_RS18860 at 4229.027 kb on + strand, within HGI48_RS18860 at 4229.028 kb on - strand at 4229.155 kb on + strand, within HGI48_RS18860 at 4229.164 kb on - strand, within HGI48_RS18860 at 4229.179 kb on - strand, within HGI48_RS18860 at 4229.379 kb on + strand at 4229.380 kb on - strand at 4229.380 kb on - strand at 4229.380 kb on - strand at 4229.380 kb on - strand at 4229.428 kb on + strand at 4229.428 kb on + strand at 4229.428 kb on + strand at 4229.428 kb on + strand at 4229.428 kb on + strand at 4229.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,226,388 + HGI48_RS18850 0.22 +0.1 4,226,389 - HGI48_RS18850 0.22 -0.0 4,226,389 - HGI48_RS18850 0.22 -0.8 4,226,389 - HGI48_RS18850 0.22 +0.6 4,226,389 - HGI48_RS18850 0.22 +0.3 4,226,389 - HGI48_RS18850 0.22 -1.3 4,226,424 - HGI48_RS18850 0.25 -0.5 4,226,471 + HGI48_RS18850 0.29 -1.9 4,226,471 + HGI48_RS18850 0.29 -2.8 4,226,472 - HGI48_RS18850 0.29 -0.7 4,226,472 - HGI48_RS18850 0.29 -1.4 4,226,472 - HGI48_RS18850 0.29 -0.7 4,226,472 - HGI48_RS18850 0.29 -0.4 4,226,472 - HGI48_RS18850 0.29 +0.6 4,227,007 + HGI48_RS18850 0.76 -0.2 4,227,007 + HGI48_RS18850 0.76 -0.1 4,227,007 + HGI48_RS18850 0.76 -0.3 4,227,007 + HGI48_RS18850 0.76 +1.1 4,227,008 - HGI48_RS18850 0.76 +0.9 4,227,008 - HGI48_RS18850 0.76 -1.1 4,227,008 - HGI48_RS18850 0.76 -0.3 4,227,008 - HGI48_RS18850 0.76 -0.7 4,227,008 - HGI48_RS18850 0.76 +0.5 4,227,008 - HGI48_RS18850 0.76 -1.1 4,227,011 + HGI48_RS18850 0.76 +0.0 4,227,011 + HGI48_RS18850 0.76 -0.1 4,227,011 + HGI48_RS18850 0.76 -0.5 4,227,302 + +0.3 4,227,302 + +0.1 4,227,302 + -0.1 4,227,302 + +2.3 4,227,302 + +1.9 4,227,303 - -1.7 4,227,303 - -1.4 4,227,410 + +0.6 4,227,410 + -1.7 4,227,411 - +1.3 4,227,411 - -2.4 4,227,434 + HGI48_RS18855 0.11 -1.8 4,227,434 + HGI48_RS18855 0.11 +2.2 4,227,434 + HGI48_RS18855 0.11 -0.1 4,227,476 + HGI48_RS18855 0.14 +1.9 4,227,476 + HGI48_RS18855 0.14 -1.2 4,227,612 + HGI48_RS18855 0.25 +0.9 4,227,613 - HGI48_RS18855 0.25 -1.1 4,227,613 - HGI48_RS18855 0.25 +0.6 4,227,613 - HGI48_RS18855 0.25 +0.9 4,227,621 + HGI48_RS18855 0.26 -2.1 4,227,739 + HGI48_RS18855 0.35 -2.3 4,227,739 + HGI48_RS18855 0.35 +1.7 4,227,740 - HGI48_RS18855 0.35 -0.7 4,227,740 - HGI48_RS18855 0.35 -0.2 4,227,740 - HGI48_RS18855 0.35 -0.3 4,227,775 + HGI48_RS18855 0.38 -0.1 4,227,786 + HGI48_RS18855 0.39 -1.7 4,227,866 + HGI48_RS18855 0.45 +0.2 4,227,866 + HGI48_RS18855 0.45 -1.6 4,227,866 + HGI48_RS18855 0.45 +0.1 4,227,867 - HGI48_RS18855 0.45 -1.1 4,227,991 + HGI48_RS18855 0.55 -0.7 4,227,992 - HGI48_RS18855 0.55 +0.1 4,227,992 - HGI48_RS18855 0.55 -0.7 4,228,096 + HGI48_RS18855 0.63 -0.5 4,228,158 + HGI48_RS18855 0.68 +1.4 4,228,158 + HGI48_RS18855 0.68 +1.1 4,228,158 + -0.1 4,228,159 - HGI48_RS18855 0.68 -0.1 4,228,159 - HGI48_RS18855 0.68 -1.1 4,228,159 - HGI48_RS18855 0.68 -0.3 4,228,160 + HGI48_RS18855 0.68 +0.7 4,228,160 + HGI48_RS18855 0.68 +0.4 4,228,161 - HGI48_RS18855 0.69 +1.4 4,228,161 - HGI48_RS18855 0.69 -0.4 4,228,161 - +0.9 4,228,416 - HGI48_RS18855 0.89 -1.4 4,228,490 + +0.1 4,228,594 + -1.3 4,228,595 - +0.5 4,228,613 + +0.2 4,228,613 + +0.2 4,228,614 - +1.2 4,228,614 - +0.6 4,228,614 - +1.5 4,228,614 - +0.2 4,228,614 - -0.9 4,228,615 + -0.6 4,228,615 + +1.1 4,228,615 + +0.9 4,228,615 + +0.6 4,228,615 + +1.4 4,228,615 + -0.1 4,228,615 + +0.4 4,228,616 - -0.5 4,228,616 - -0.5 4,228,616 - +0.1 4,228,616 - -1.4 4,228,616 - +1.2 4,228,616 - -0.7 4,228,616 - -1.4 4,228,616 - +0.5 4,228,742 + HGI48_RS18860 0.18 +0.3 4,228,742 + HGI48_RS18860 0.18 -1.4 4,228,743 - HGI48_RS18860 0.18 +0.7 4,228,743 - HGI48_RS18860 0.18 -1.1 4,228,822 - HGI48_RS18860 0.27 +0.4 4,228,945 + HGI48_RS18860 0.42 -0.4 4,228,945 + -0.7 4,228,946 - HGI48_RS18860 0.42 +0.2 4,229,027 + HGI48_RS18860 0.51 -0.6 4,229,027 + HGI48_RS18860 0.51 +0.5 4,229,027 + HGI48_RS18860 0.51 -0.5 4,229,028 - +1.5 4,229,155 + HGI48_RS18860 0.66 -0.9 4,229,164 - HGI48_RS18860 0.67 -0.6 4,229,179 - HGI48_RS18860 0.69 -2.3 4,229,379 + -0.5 4,229,380 - +1.5 4,229,380 - -1.0 4,229,380 - -1.2 4,229,380 - -0.8 4,229,428 + +0.2 4,229,428 + -1.4 4,229,428 + +0.1 4,229,428 + -0.1 4,229,428 + +0.3 4,229,429 - -1.4
Or see this region's nucleotide sequence