Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18480

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,149,787	+				+0.4
4,149,788	-				-0.6
4,149,841	-				-1.2
4,149,863	+				+1.0
4,149,889	-				+0.4
4,150,017	+				+2.1
4,150,017	+		HGI48_RS18480	0.23	+0.8
4,150,017	+				+1.3
4,150,018	-		HGI48_RS18480	0.23	-0.2
4,150,018	-		HGI48_RS18480	0.23	+0.7
4,150,018	-		HGI48_RS18480	0.23	-1.0
4,150,034	+		HGI48_RS18480	0.26	-1.5
4,150,077	-				+0.3
4,150,112	+		HGI48_RS18480	0.41	+0.3
4,150,112	+				+2.1
4,150,112	+		HGI48_RS18480	0.41	-0.5
4,150,112	+		HGI48_RS18480	0.41	-2.5
4,150,112	+		HGI48_RS18480	0.41	+0.3
4,150,113	-		HGI48_RS18480	0.42	-1.2
4,150,153	+		HGI48_RS18480	0.49	+1.4
4,150,154	-		HGI48_RS18480	0.50	-0.7
4,150,154	-				+1.8
4,150,155	+		HGI48_RS18480	0.50	-0.0
4,150,155	+		HGI48_RS18480	0.50	-0.3
4,150,155	+		HGI48_RS18480	0.50	-1.2
4,150,155	+		HGI48_RS18480	0.50	-0.5
4,150,156	-		HGI48_RS18480	0.50	-0.2
4,150,156	-		HGI48_RS18480	0.50	-0.2
4,150,156	-		HGI48_RS18480	0.50	-0.5
4,150,285	-		HGI48_RS18480	0.75	-0.2
4,150,397	-				+0.1
4,150,474	-				-1.5
4,150,512	-				-2.0
4,150,512	-				-0.2
4,150,512	-				+1.4
4,150,540	+				-0.1
4,150,540	+				-0.7
4,150,541	-				-0.7
4,150,541	-				-0.5
4,150,543	+				+1.5
4,150,543	+				+0.5
4,150,544	-				-0.2
4,150,595	+		HGI48_RS18485	0.12	+0.5
4,150,650	+				+1.3
4,150,650	+		HGI48_RS18485	0.20	-1.5
4,150,661	+		HGI48_RS18485	0.21	-0.2
4,150,661	+		HGI48_RS18485	0.21	-1.5
4,150,661	+		HGI48_RS18485	0.21	-1.7
4,150,661	+		HGI48_RS18485	0.21	+0.0
4,150,661	+		HGI48_RS18485	0.21	-0.2
4,150,662	-		HGI48_RS18485	0.21	-1.0
4,150,765	+		HGI48_RS18485	0.36	-0.4
4,150,765	+		HGI48_RS18485	0.36	-0.2
4,150,765	+		HGI48_RS18485	0.36	-0.4
4,150,765	+		HGI48_RS18485	0.36	+1.2
4,150,765	+		HGI48_RS18485	0.36	+1.1
4,150,766	-		HGI48_RS18485	0.36	-0.2
4,150,766	-		HGI48_RS18485	0.36	-0.5
4,150,867	+		HGI48_RS18485	0.51	+0.8
4,150,867	+		HGI48_RS18485	0.51	-1.6
4,150,867	+		HGI48_RS18485	0.51	+1.0
4,150,867	+		HGI48_RS18485	0.51	-0.7
4,150,867	+		HGI48_RS18485	0.51	-0.5
4,150,868	-		HGI48_RS18485	0.51	-0.5
4,150,868	-		HGI48_RS18485	0.51	-0.2
4,150,868	-		HGI48_RS18485	0.51	-2.3
4,150,868	-		HGI48_RS18485	0.51	-1.2
4,150,868	-				+0.8
4,150,868	-		HGI48_RS18485	0.51	-0.9
4,150,919	+		HGI48_RS18485	0.58	-0.5
4,150,920	-		HGI48_RS18485	0.58	+1.7
4,150,920	-		HGI48_RS18485	0.58	-0.3
4,150,920	-		HGI48_RS18485	0.58	+0.4
4,150,920	-		HGI48_RS18485	0.58	+0.0
4,150,920	-		HGI48_RS18485	0.58	-0.7
4,150,920	-		HGI48_RS18485	0.58	+1.0
4,150,923	+				-0.7
4,150,923	+		HGI48_RS18485	0.59	-2.7
4,150,924	-		HGI48_RS18485	0.59	-1.2
4,150,924	-		HGI48_RS18485	0.59	-0.4
4,150,924	-		HGI48_RS18485	0.59	-0.7
4,150,924	-		HGI48_RS18485	0.59	-2.5
4,151,037	+		HGI48_RS18485	0.75	-2.0
4,151,037	+		HGI48_RS18485	0.75	+0.1
4,151,037	+		HGI48_RS18485	0.75	-0.7
4,151,037	+		HGI48_RS18485	0.75	+0.8
4,151,037	+		HGI48_RS18485	0.75	+0.4
4,151,037	+		HGI48_RS18485	0.75	+0.4
4,151,037	+		HGI48_RS18485	0.75	-0.2
4,151,037	+				+0.3
4,151,038	-				+0.8
4,151,038	-		HGI48_RS18485	0.75	-0.4
4,151,038	-				+1.3
4,151,038	-		HGI48_RS18485	0.75	-1.3
4,151,038	-		HGI48_RS18485	0.75	+0.3
4,151,038	-		HGI48_RS18485	0.75	-0.7
4,151,038	-		HGI48_RS18485	0.75	-0.6
4,151,038	-		HGI48_RS18485	0.75	-2.2
4,151,038	-		HGI48_RS18485	0.75	+1.1
4,151,038	-				+0.8
4,151,038	-		HGI48_RS18485	0.75	-1.4
4,151,038	-		HGI48_RS18485	0.75	+0.6
4,151,038	-		HGI48_RS18485	0.75	-0.0
4,151,043	+		HGI48_RS18485	0.76	-2.0
4,151,043	+		HGI48_RS18485	0.76	+1.7
4,151,043	+		HGI48_RS18485	0.76	+0.4
4,151,043	+		HGI48_RS18485	0.76	+0.4
4,151,043	+		HGI48_RS18485	0.76	+1.1
4,151,043	+		HGI48_RS18485	0.76	+1.2
4,151,043	+		HGI48_RS18485	0.76	-1.0
4,151,044	-		HGI48_RS18485	0.76	+0.0
4,151,044	-		HGI48_RS18485	0.76	-0.1
4,151,044	-		HGI48_RS18485	0.76	+0.4
4,151,044	-		HGI48_RS18485	0.76	-0.6
4,151,044	-		HGI48_RS18485	0.76	-1.6
4,151,044	-		HGI48_RS18485	0.76	+0.5
4,151,044	-		HGI48_RS18485	0.76	+1.2
4,151,044	-		HGI48_RS18485	0.76	-2.2
4,151,044	-		HGI48_RS18485	0.76	-0.5
4,151,045	+		HGI48_RS18485	0.76	-0.2
4,151,046	-				-0.2
4,151,046	-		HGI48_RS18485	0.76	+0.7
4,151,138	+				+1.6
4,151,184	+				-0.2
4,151,184	+				-0.5
4,151,184	+				-0.6
4,151,185	-				-0.2
4,151,185	-				-1.2
4,151,185	-				+1.8
4,151,221	+				+1.8
4,151,222	-				-0.3
4,151,224	+				+0.3
4,151,224	+				+0.8
4,151,224	+				-0.4
4,151,224	+				-1.0
4,151,224	+				+0.1
4,151,225	-				-0.4
4,151,225	-				-0.2
4,151,225	-				-1.0
4,151,225	-				+0.6
4,151,225	-				+2.5
4,151,225	-				-0.5
4,151,241	+				-1.6
4,151,241	+				+0.8
4,151,241	+				+0.7
4,151,241	+				-0.0
4,151,242	-				-0.2
4,151,242	-				+0.6
4,151,242	-				-1.0
4,151,243	+				+0.4
4,151,244	-				+0.8
4,151,244	-				+0.1
4,151,244	-				+0.0
4,151,244	-				+1.0
4,151,244	-				-0.5
4,151,244	-				+0.1
4,151,322	+				-0.4
4,151,322	+				+0.5
4,151,322	+				+1.5
4,151,322	+				-0.1
4,151,323	-				+1.4
4,151,333	+				-0.7
4,151,334	-				-1.0
4,151,334	-				+0.7
4,151,345	+				-1.2
4,151,346	-				+1.7