Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17870

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,011,644	+				-0.2
4,011,644	+		HGI48_RS17865	0.35	-1.8
4,011,645	-		HGI48_RS17865	0.35	-0.1
4,011,669	-		HGI48_RS17865	0.37	+0.6
4,011,689	+		HGI48_RS17865	0.39	+0.0
4,011,689	+				+0.2
4,011,689	+				+0.8
4,011,689	+				-0.8
4,011,690	-		HGI48_RS17865	0.39	+0.5
4,011,690	-		HGI48_RS17865	0.39	-0.8
4,011,890	-		HGI48_RS17865	0.54	-3.8
4,011,890	-		HGI48_RS17865	0.54	-1.5
4,011,890	-		HGI48_RS17865	0.54	-1.3
4,011,890	-		HGI48_RS17865	0.54	-0.8
4,011,907	+		HGI48_RS17865	0.55	-0.2
4,011,907	+		HGI48_RS17865	0.55	+1.2
4,011,941	-		HGI48_RS17865	0.57	+0.2
4,012,020	+		HGI48_RS17865	0.63	-0.5
4,012,060	+		HGI48_RS17865	0.66	+1.8
4,012,060	+				+0.8
4,012,060	+		HGI48_RS17865	0.66	-1.5
4,012,060	+		HGI48_RS17865	0.66	+0.4
4,012,060	+		HGI48_RS17865	0.66	-0.9
4,012,060	+		HGI48_RS17865	0.66	+0.2
4,012,061	-		HGI48_RS17865	0.66	+0.8
4,012,080	+		HGI48_RS17865	0.68	-2.8
4,012,080	+		HGI48_RS17865	0.68	-1.5
4,012,080	+		HGI48_RS17865	0.68	-0.8
4,012,081	-		HGI48_RS17865	0.68	+0.4
4,012,097	-		HGI48_RS17865	0.69	-1.5
4,012,142	+		HGI48_RS17865	0.72	-0.6
4,012,142	+				+2.7
4,012,216	+				+1.4
4,012,216	+		HGI48_RS17865	0.78	+0.8
4,012,216	+		HGI48_RS17865	0.78	+1.0
4,012,216	+		HGI48_RS17865	0.78	+1.2
4,012,217	-		HGI48_RS17865	0.78	+1.7
4,012,217	-		HGI48_RS17865	0.78	+1.9
4,012,217	-		HGI48_RS17865	0.78	+1.3
4,012,217	-		HGI48_RS17865	0.78	+0.5
4,012,323	+		HGI48_RS17865	0.86	-2.3
4,012,324	-		HGI48_RS17865	0.86	-1.8
4,012,361	+		HGI48_RS17865	0.88	-0.6
4,012,361	+		HGI48_RS17865	0.88	-0.2
4,012,362	-		HGI48_RS17865	0.89	+0.7
4,012,381	+				-1.0
4,012,381	+				+0.6
4,012,381	+				-0.5
4,012,381	+				+0.1
4,012,381	+				+0.2
4,012,382	-				+1.3
4,012,382	-				+2.1
4,012,398	+				-0.6
4,012,424	-				-0.5
4,012,424	-				+0.5
4,012,424	-				-0.4
4,012,529	+				+1.5
4,012,529	+				+1.2
4,012,529	+				-0.8
4,012,529	+				-0.5
4,012,529	+				-0.0
4,012,529	+				-1.5
4,012,530	-				-2.6
4,012,530	-				+0.7
4,012,530	-				+0.6
4,012,530	-				-0.2
4,012,530	-				-0.4
4,012,530	-				+0.4
4,012,532	+				+0.8
4,012,533	-				-1.2
4,012,533	-				-0.4
4,012,596	+				-1.2
4,012,605	+				+0.1
4,012,605	+				+0.1
4,012,605	+				+1.1
4,012,605	+				+0.6
4,012,605	+				+0.3
4,012,605	+				+0.8
4,012,606	-				-0.5
4,012,606	-				-1.0
4,012,606	-				-0.6
4,012,610	+				-1.0
4,012,610	+				-0.2
4,012,611	-				-1.5
4,012,611	-				-2.0
4,012,614	+				+0.3
4,012,614	+				-1.6
4,012,614	+				+0.0
4,012,615	-				+0.8
4,012,615	-				-1.2
4,012,615	-				-1.5
4,012,643	+				+0.3
4,012,644	-				+0.4
4,012,644	-				-1.8
4,012,644	-				-0.5
4,012,644	-				-2.2
4,012,651	+				+0.0
4,012,651	+				+0.5
4,012,656	+				-1.0
4,012,656	+				-0.6
4,012,656	+				-0.7
4,012,657	-				+0.8
4,012,657	-				+1.1
4,012,657	-				-0.1
4,012,657	-				+0.8
4,012,660	+				+0.8
4,012,660	+				-0.4
4,012,660	+				-0.8
4,012,661	-				+1.6
4,012,748	-		HGI48_RS17870	0.13	-0.4
4,012,791	-		HGI48_RS17870	0.18	-0.2
4,012,797	+		HGI48_RS17870	0.18	-1.0
4,012,872	+		HGI48_RS17870	0.27	-1.0
4,012,919	+		HGI48_RS17870	0.33	+0.1
4,012,920	-				+1.8
4,012,920	-		HGI48_RS17870	0.33	+0.4
4,013,214	+		HGI48_RS17870	0.67	-1.5
4,013,223	+		HGI48_RS17870	0.68	-0.6
4,013,279	+		HGI48_RS17870	0.75	+0.5
4,013,279	+				+0.8
4,013,279	+				-0.8
4,013,279	+				-0.8
4,013,279	+		HGI48_RS17870	0.75	+0.3
4,013,280	-		HGI48_RS17870	0.75	-0.5
4,013,280	-		HGI48_RS17870	0.75	-0.8
4,013,280	-		HGI48_RS17870	0.75	-1.3
4,013,280	-		HGI48_RS17870	0.75	-0.1
4,013,280	-		HGI48_RS17870	0.75	-0.3
4,013,477	+				-0.8
4,013,477	+				-1.8
4,013,477	+				-0.9
4,013,478	-				-0.2
4,013,482	+				-0.4
4,013,482	+				-1.8
4,013,486	+				+0.2
4,013,486	+				-0.5
4,013,487	-				+0.4
4,013,487	-				+0.2
4,013,487	-				-0.1
4,013,487	-				-1.3
4,013,487	-				+0.2
4,013,487	-				-0.2
4,013,599	+		HGI48_RS17875	0.17	+1.8
4,013,599	+		HGI48_RS17875	0.17	-0.3
4,013,600	-		HGI48_RS17875	0.18	-1.2
4,013,600	-		HGI48_RS17875	0.18	-0.2
4,013,623	+		HGI48_RS17875	0.22	-2.0
4,013,631	+		HGI48_RS17875	0.23	+0.1
4,013,631	+		HGI48_RS17875	0.23	+0.2
4,013,631	+		HGI48_RS17875	0.23	+0.8
4,013,631	+		HGI48_RS17875	0.23	+0.2
4,013,632	-		HGI48_RS17875	0.23	-1.5
4,013,632	-		HGI48_RS17875	0.23	-2.2
4,013,673	+		HGI48_RS17875	0.31	-0.2
4,013,673	+		HGI48_RS17875	0.31	-1.0
4,013,674	-		HGI48_RS17875	0.31	-1.3
4,013,674	-		HGI48_RS17875	0.31	-1.0
4,013,686	+		HGI48_RS17875	0.33	-0.6
4,013,802	+		HGI48_RS17875	0.54	-0.2
4,013,803	-		HGI48_RS17875	0.54	-1.3
4,013,803	-		HGI48_RS17875	0.54	-1.8
4,013,803	-		HGI48_RS17875	0.54	+0.0
4,013,862	-		HGI48_RS17875	0.64	+0.7
4,013,874	+				-0.8
4,013,874	+		HGI48_RS17875	0.66	-1.5
4,013,921	-		HGI48_RS17875	0.75	-0.5
4,013,922	+		HGI48_RS17875	0.75	+0.8
4,013,922	+		HGI48_RS17875	0.75	-2.3
4,013,922	+		HGI48_RS17875	0.75	-1.2
4,013,922	+		HGI48_RS17875	0.75	-0.2
4,013,923	-		HGI48_RS17875	0.75	-2.6
4,013,923	-		HGI48_RS17875	0.75	+1.4
4,014,073	+				-1.0
4,014,073	+				-0.5
4,014,073	+				+1.4
4,014,073	+				-0.8
4,014,073	+				+0.8
4,014,073	+				-0.5
4,014,074	-				-2.5
4,014,074	-				-0.3
4,014,074	-				+1.5
4,014,074	-				+0.8
4,014,074	-				+1.1
4,014,074	-				+0.2
4,014,074	-				+1.0
4,014,075	+				-1.0
4,014,076	-				-1.2
4,014,076	-				-0.2
4,014,076	-				-0.4
4,014,076	-				+0.3
4,014,121	-				+0.8
4,014,263	-		HGI48_RS17880	0.19	-1.2
4,014,397	-				-0.8
4,014,426	+		HGI48_RS17880	0.70	+0.8
4,014,427	-		HGI48_RS17880	0.70	-0.4
4,014,427	-		HGI48_RS17880	0.70	+0.9
4,014,427	-		HGI48_RS17880	0.70	-0.4
4,014,467	+		HGI48_RS17880	0.83	-0.4
4,014,467	+		HGI48_RS17880	0.83	+0.5
4,014,468	-		HGI48_RS17880	0.83	+0.0
4,014,468	-		HGI48_RS17880	0.83	+0.0
4,014,468	-		HGI48_RS17880	0.83	-0.4
4,014,468	-		HGI48_RS17880	0.83	+0.2