Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17845

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS17840 and HGI48_RS17845 are separated by 214 nucleotidesHGI48_RS17845 and HGI48_RS17850 are separated by 13 nucleotides HGI48_RS17840: HGI48_RS17840 - dihydrolipoyl dehydrogenase, at 4,003,445 to 4,004,869 _RS17840 HGI48_RS17845: HGI48_RS17845 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 4,005,084 to 4,006,946 _RS17845 HGI48_RS17850: HGI48_RS17850 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 4,006,960 to 4,009,623 _RS17850 Position (kb) 4005 4006 4007Strain fitness (log2 ratio) -1 0 1at 4004.124 kb on + strand, within HGI48_RS17840at 4005.017 kb on - strandat 4005.027 kb on - strandat 4005.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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4,004,124 + HGI48_RS17840 0.48 -0.8
4,005,017 - +1.4
4,005,027 - +0.7
4,005,027 - +0.5

Or see this region's nucleotide sequence