Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17120

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,835,475	+				+0.7
3,835,476	-		HGI48_RS17115	0.75	-0.1
3,835,476	-		HGI48_RS17115	0.75	-0.3
3,835,872	+				+0.6
3,835,872	+				+0.1
3,835,873	-				+0.0
3,835,874	+				-0.6
3,835,874	+				-0.1
3,835,874	+				-1.4
3,835,874	+				-1.3
3,835,875	-				+1.2
3,835,913	-				+1.2
3,835,986	+				-1.1
3,836,047	+				-2.0
3,836,048	-				-1.3
3,836,052	-				+1.6
3,836,167	-				-0.3
3,836,236	+				-0.8
3,836,236	+				+0.7
3,836,237	-				+0.7
3,836,257	+				-0.4
3,836,316	+				-0.1
3,836,317	-				+1.2
3,836,409	+				+1.3
3,836,410	-				-2.3
3,836,420	+				-0.7
3,836,422	+				+0.7
3,836,422	+				+0.7
3,836,423	-				-0.6
3,836,423	-				-0.6
3,836,423	-				+0.2
3,836,432	-				+0.3
3,836,432	-				-0.4
3,836,472	+				-1.1
3,836,485	+				-1.4
3,836,486	-				+1.0
3,836,541	+				+0.2
3,836,542	-				-0.1
3,836,542	-				-2.1
3,836,545	+				-0.6
3,836,613	+				+0.7
3,836,613	+		HGI48_RS17120	0.10	-1.3
3,836,613	+		HGI48_RS17120	0.10	-0.5
3,836,613	+				+1.2
3,836,614	-		HGI48_RS17120	0.11	+0.1
3,836,728	+		HGI48_RS17120	0.18	+0.3
3,836,758	+		HGI48_RS17120	0.20	-0.1
3,836,759	-		HGI48_RS17120	0.20	-0.3
3,836,766	+		HGI48_RS17120	0.20	+0.7
3,836,766	+		HGI48_RS17120	0.20	-2.4
3,836,783	-		HGI48_RS17120	0.22	-0.1
3,836,783	-		HGI48_RS17120	0.22	+0.6
3,836,784	+		HGI48_RS17120	0.22	-0.6
3,836,785	-				+1.2
3,836,839	+		HGI48_RS17120	0.25	+0.4
3,836,839	+		HGI48_RS17120	0.25	-0.0
3,836,840	-		HGI48_RS17120	0.25	+0.5
3,836,840	-		HGI48_RS17120	0.25	-1.3
3,836,840	-		HGI48_RS17120	0.25	-0.7
3,836,881	+		HGI48_RS17120	0.28	+0.3
3,836,882	-		HGI48_RS17120	0.28	+1.6
3,836,882	-		HGI48_RS17120	0.28	+0.5
3,836,882	-				+1.3
3,836,883	+		HGI48_RS17120	0.28	-0.2
3,836,884	-		HGI48_RS17120	0.28	+0.7
3,837,005	+		HGI48_RS17120	0.36	+0.4
3,837,006	-		HGI48_RS17120	0.36	+0.0
3,837,044	+		HGI48_RS17120	0.39	+0.6
3,837,045	-		HGI48_RS17120	0.39	+1.3
3,837,047	+		HGI48_RS17120	0.39	-0.0
3,837,047	+		HGI48_RS17120	0.39	+0.0
3,837,047	+				+0.7
3,837,048	-		HGI48_RS17120	0.39	-0.3
3,837,048	-		HGI48_RS17120	0.39	-0.1
3,837,128	+		HGI48_RS17120	0.44	-0.7
3,837,128	+		HGI48_RS17120	0.44	-0.8
3,837,128	+		HGI48_RS17120	0.44	-0.3
3,837,128	+		HGI48_RS17120	0.44	-0.8
3,837,128	+		HGI48_RS17120	0.44	-1.3
3,837,129	-				-0.3
3,837,129	-		HGI48_RS17120	0.44	-0.3
3,837,129	-		HGI48_RS17120	0.44	+1.8
3,837,129	-		HGI48_RS17120	0.44	-1.8
3,837,129	-		HGI48_RS17120	0.44	+0.0
3,837,159	+		HGI48_RS17120	0.46	-0.5
3,837,160	-				+0.7
3,837,357	+		HGI48_RS17120	0.59	+0.7
3,837,369	+		HGI48_RS17120	0.60	+0.4
3,837,641	+		HGI48_RS17120	0.77	-1.1
3,837,641	+		HGI48_RS17120	0.77	-0.3
3,837,642	-		HGI48_RS17120	0.77	+0.3
3,837,642	-		HGI48_RS17120	0.77	-0.3
3,837,642	-		HGI48_RS17120	0.77	+1.7
3,837,757	-		HGI48_RS17120	0.85	+0.7
3,837,757	-		HGI48_RS17120	0.85	-0.3
3,837,985	+				+0.4
3,837,986	-				-1.3
3,837,986	-				-0.7
3,838,003	+				+0.3
3,838,004	-				+0.7
3,838,004	-				-0.8
3,838,004	-				-0.8
3,838,037	-				+0.7
3,838,040	+				-1.8
3,838,040	+				-0.3
3,838,040	+				-1.6
3,838,040	+				+1.9
3,838,040	+				+1.0
3,838,040	+				-0.5
3,838,040	+				+0.0
3,838,040	+				+0.0
3,838,040	+				-1.8
3,838,040	+				-0.1
3,838,040	+				-1.3
3,838,041	-				+1.1
3,838,041	-				-0.8
3,838,041	-				+0.0
3,838,041	-				-2.6
3,838,041	-				+0.3
3,838,041	-				+0.0
3,838,058	+				+0.2
3,838,061	+				+0.1
3,838,061	+				+0.7
3,838,062	-				+0.3
3,838,071	+				-1.6
3,838,095	+				+0.4
3,838,096	-				+0.2
3,838,096	-				+0.7
3,838,096	-				-0.6
3,838,102	-				+0.7
3,838,102	-				-1.3
3,838,131	+				+0.7
3,838,145	+				-0.4
3,838,145	+				-1.8
3,838,145	+				+1.5
3,838,145	+				-0.2
3,838,145	+				+1.3
3,838,145	+				+0.7
3,838,146	-				-0.5
3,838,146	-				+0.0
3,838,146	-				+0.7
3,838,146	-				-1.4
3,838,146	-				-2.3
3,838,437	-		HGI48_RS17125	0.87	-1.3
3,838,470	+				-2.3
3,838,470	+				+0.6
3,838,470	+				+1.2
3,838,470	+				-0.1
3,838,471	-				+0.2
3,838,471	-				+1.1
3,838,471	-				-1.3
3,838,504	-				+0.2
3,838,504	-				-0.2
3,838,504	-				-1.6
3,838,505	+				+1.5
3,838,505	+				+0.4
3,838,506	-				-0.3
3,838,569	-				-0.8
3,838,569	-				-0.7
3,838,604	+				+0.6
3,838,604	+				+0.7
3,838,605	-				-0.8
3,838,618	+				+0.2
3,838,626	+				-2.6
3,838,626	+				-0.3
3,838,627	-				-0.5
3,838,627	-				-0.1
3,838,851	+		HGI48_RS17130	0.61	-1.1
3,838,851	+		HGI48_RS17130	0.61	-1.6
3,838,851	+				+1.3
3,838,851	+		HGI48_RS17130	0.61	-1.3
3,838,851	+		HGI48_RS17130	0.61	-0.0
3,838,851	+		HGI48_RS17130	0.61	-1.8
3,838,852	-		HGI48_RS17130	0.61	+0.4
3,838,852	-		HGI48_RS17130	0.61	+1.0
3,838,982	+				+0.2
3,838,982	+				+0.2
3,838,982	+				-1.3
3,838,982	+				+2.5
3,838,982	+				-1.6
3,838,983	-				-0.5
3,838,983	-				+0.7
3,838,983	-				+0.1
3,838,983	-				-0.4
3,838,983	-				+1.2
3,838,983	-				+0.1
3,838,984	+				-1.3
3,838,984	+				-1.8
3,838,985	-				-1.6