Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16705

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,741,078	+		HGI48_RS16695	0.82	-0.8
3,741,078	+		HGI48_RS16695	0.82	-2.6
3,741,078	+		HGI48_RS16695	0.82	+0.0
3,741,078	+		HGI48_RS16695	0.82	+0.7
3,741,078	+		HGI48_RS16695	0.82	-0.7
3,741,078	+		HGI48_RS16695	0.82	+0.5
3,741,078	+		HGI48_RS16695	0.82	-0.3
3,741,078	+		HGI48_RS16695	0.82	-1.6
3,741,078	+		HGI48_RS16695	0.82	-0.8
3,741,079	-		HGI48_RS16695	0.82	+0.5
3,741,079	-		HGI48_RS16695	0.82	+2.0
3,741,079	-				-0.8
3,741,079	-		HGI48_RS16695	0.82	-0.1
3,741,079	-		HGI48_RS16695	0.82	+1.0
3,741,079	-		HGI48_RS16695	0.82	+0.5
3,741,079	-		HGI48_RS16695	0.82	+0.1
3,741,079	-		HGI48_RS16695	0.82	-1.6
3,741,206	+				-0.2
3,741,206	+				-2.6
3,741,206	+				+1.1
3,741,207	-				-1.2
3,741,220	+				-0.4
3,741,268	+				-0.1
3,741,268	+				-0.8
3,741,268	+				-2.1
3,741,268	+				-0.2
3,741,268	+				+0.0
3,741,268	+				+0.4
3,741,268	+				+0.0
3,741,269	-				-0.5
3,741,269	-				+0.2
3,741,269	-				-1.2
3,741,269	-				+0.1
3,741,269	-				+0.6
3,741,269	-				-1.4
3,741,269	-				+1.0
3,741,269	-				+1.3
3,741,269	-				-1.2
3,741,279	+				+0.2
3,741,279	+				-0.1
3,741,280	-				+1.2
3,741,280	-				-1.2
3,741,280	-				+1.0
3,741,294	+				-0.2
3,741,294	+				+0.9
3,741,294	+				-0.0
3,741,294	+				-0.8
3,741,294	+				-0.2
3,741,294	+				-0.2
3,741,294	+				+0.6
3,741,294	+				-1.2
3,741,294	+				+1.0
3,741,294	+				-1.4
3,741,294	+				+0.8
3,741,295	-				-1.2
3,741,295	-				-0.6
3,741,295	-				-1.7
3,741,295	-				-0.5
3,741,354	+		HGI48_RS16700	0.11	-1.9
3,741,575	+		HGI48_RS16700	0.40	+0.1
3,741,575	+		HGI48_RS16700	0.40	+1.1
3,741,575	+		HGI48_RS16700	0.40	+0.6
3,741,576	-		HGI48_RS16700	0.40	+0.1
3,741,576	-		HGI48_RS16700	0.40	-0.5
3,741,576	-		HGI48_RS16700	0.40	+0.2
3,741,581	+		HGI48_RS16700	0.41	-0.6
3,741,582	-		HGI48_RS16700	0.41	+0.8
3,741,623	+		HGI48_RS16700	0.46	-0.0
3,741,623	+		HGI48_RS16700	0.46	-0.5
3,741,623	+		HGI48_RS16700	0.46	-0.4
3,741,623	+		HGI48_RS16700	0.46	-1.1
3,741,623	+		HGI48_RS16700	0.46	+0.6
3,741,623	+		HGI48_RS16700	0.46	+0.8
3,741,623	+		HGI48_RS16700	0.46	-1.5
3,741,623	+		HGI48_RS16700	0.46	-0.5
3,741,623	+		HGI48_RS16700	0.46	-0.9
3,741,623	+		HGI48_RS16700	0.46	+1.1
3,741,623	+		HGI48_RS16700	0.46	+1.2
3,741,623	+		HGI48_RS16700	0.46	-0.7
3,741,623	+		HGI48_RS16700	0.46	+0.6
3,741,623	+		HGI48_RS16700	0.46	+1.2
3,741,624	-		HGI48_RS16700	0.46	-1.1
3,741,624	-		HGI48_RS16700	0.46	-1.7
3,741,624	-		HGI48_RS16700	0.46	+0.2
3,741,624	-		HGI48_RS16700	0.46	-0.6
3,741,624	-		HGI48_RS16700	0.46	-0.1
3,741,624	-		HGI48_RS16700	0.46	+0.2
3,741,624	-		HGI48_RS16700	0.46	+0.7
3,741,624	-		HGI48_RS16700	0.46	-1.6
3,741,624	-		HGI48_RS16700	0.46	-0.8
3,741,624	-		HGI48_RS16700	0.46	+0.3
3,741,624	-		HGI48_RS16700	0.46	+0.3
3,741,624	-		HGI48_RS16700	0.46	-0.8
3,741,626	+		HGI48_RS16700	0.46	-1.8
3,741,626	+		HGI48_RS16700	0.46	-0.2
3,741,626	+		HGI48_RS16700	0.46	-0.3
3,741,627	-		HGI48_RS16700	0.47	-0.9
3,741,627	-		HGI48_RS16700	0.47	+1.1
3,741,627	-		HGI48_RS16700	0.47	-0.4
3,741,627	-		HGI48_RS16700	0.47	-0.8
3,741,673	+		HGI48_RS16700	0.53	-1.8
3,741,673	+		HGI48_RS16700	0.53	-0.5
3,741,674	-		HGI48_RS16700	0.53	+0.3
3,741,674	-		HGI48_RS16700	0.53	-0.6
3,741,674	-		HGI48_RS16700	0.53	+1.3
3,741,692	+		HGI48_RS16700	0.55	-0.2
3,741,693	-		HGI48_RS16700	0.55	-2.4
3,741,734	+		HGI48_RS16700	0.61	-1.5
3,741,734	+		HGI48_RS16700	0.61	-0.3
3,741,734	+		HGI48_RS16700	0.61	+0.2
3,741,734	+		HGI48_RS16700	0.61	+1.0
3,741,735	-		HGI48_RS16700	0.61	-0.0
3,741,735	-		HGI48_RS16700	0.61	-0.9
3,741,735	-		HGI48_RS16700	0.61	-0.8
3,741,735	-		HGI48_RS16700	0.61	-0.1
3,741,749	+		HGI48_RS16700	0.62	+0.5
3,741,749	+		HGI48_RS16700	0.62	-0.1
3,741,749	+		HGI48_RS16700	0.62	-0.3
3,741,749	+		HGI48_RS16700	0.62	-1.1
3,741,749	+		HGI48_RS16700	0.62	-0.8
3,741,750	-		HGI48_RS16700	0.63	+0.9
3,741,750	-		HGI48_RS16700	0.63	-0.7
3,741,750	-		HGI48_RS16700	0.63	-1.7
3,741,750	-		HGI48_RS16700	0.63	+1.0
3,741,750	-		HGI48_RS16700	0.63	+0.2
3,741,750	-		HGI48_RS16700	0.63	+0.3
3,741,750	-		HGI48_RS16700	0.63	+1.6
3,741,750	-		HGI48_RS16700	0.63	-0.3
3,741,750	-		HGI48_RS16700	0.63	-0.9
3,741,750	-		HGI48_RS16700	0.63	-0.6
3,741,750	-		HGI48_RS16700	0.63	+1.1
3,741,750	-		HGI48_RS16700	0.63	+0.2
3,741,827	+		HGI48_RS16700	0.73	-1.1
3,741,827	+				+0.8
3,741,827	+		HGI48_RS16700	0.73	-1.4
3,741,827	+		HGI48_RS16700	0.73	+0.1
3,741,827	+		HGI48_RS16700	0.73	-0.1
3,741,827	+		HGI48_RS16700	0.73	-0.8
3,741,827	+		HGI48_RS16700	0.73	+0.0
3,741,827	+		HGI48_RS16700	0.73	+1.0
3,741,827	+		HGI48_RS16700	0.73	+0.0
3,741,827	+		HGI48_RS16700	0.73	+0.8
3,741,827	+		HGI48_RS16700	0.73	+1.0
3,741,827	+		HGI48_RS16700	0.73	-0.2
3,741,828	-		HGI48_RS16700	0.73	+0.2
3,741,828	-		HGI48_RS16700	0.73	+1.0
3,741,828	-		HGI48_RS16700	0.73	-0.6
3,741,828	-		HGI48_RS16700	0.73	+0.5
3,741,828	-		HGI48_RS16700	0.73	+0.7
3,741,828	-		HGI48_RS16700	0.73	+1.3
3,741,828	-		HGI48_RS16700	0.73	+1.0
3,741,828	-		HGI48_RS16700	0.73	+0.3
3,741,828	-		HGI48_RS16700	0.73	-1.1
3,741,828	-		HGI48_RS16700	0.73	+0.3
3,741,828	-		HGI48_RS16700	0.73	-1.4
3,741,828	-		HGI48_RS16700	0.73	-1.1
3,741,828	-		HGI48_RS16700	0.73	-1.0
3,741,828	-		HGI48_RS16700	0.73	+0.0
3,741,828	-		HGI48_RS16700	0.73	+1.1
3,741,828	-		HGI48_RS16700	0.73	+0.6
3,741,828	-		HGI48_RS16700	0.73	+0.5
3,741,828	-		HGI48_RS16700	0.73	+0.8
3,741,828	-		HGI48_RS16700	0.73	-0.1
3,741,828	-		HGI48_RS16700	0.73	-1.0
3,741,828	-		HGI48_RS16700	0.73	-0.9
3,741,895	+		HGI48_RS16700	0.82	-0.5
3,741,986	+				-0.5
3,741,986	+				-0.0
3,741,987	-				-0.2
3,741,987	-				-1.7
3,742,034	+				-0.4
3,742,034	+				+1.2
3,742,325	+		HGI48_RS16705	0.21	+1.9
3,742,325	+		HGI48_RS16705	0.21	-0.3
3,742,325	+		HGI48_RS16705	0.21	-0.1
3,742,325	+		HGI48_RS16705	0.21	+0.5
3,742,325	+		HGI48_RS16705	0.21	-0.1
3,742,326	-		HGI48_RS16705	0.21	+1.1
3,742,514	+		HGI48_RS16705	0.36	+1.0
3,742,515	-		HGI48_RS16705	0.36	-1.8
3,742,515	-		HGI48_RS16705	0.36	+2.1
3,742,635	+		HGI48_RS16705	0.45	+0.3
3,742,635	+		HGI48_RS16705	0.45	+0.0
3,742,636	-		HGI48_RS16705	0.45	-0.1
3,742,733	+		HGI48_RS16705	0.53	-1.6
3,742,734	-		HGI48_RS16705	0.53	+0.7
3,742,773	+		HGI48_RS16705	0.56	+0.1
3,742,957	+		HGI48_RS16705	0.71	+1.0
3,742,957	+		HGI48_RS16705	0.71	+0.5
3,742,957	+		HGI48_RS16705	0.71	+1.4
3,742,957	+		HGI48_RS16705	0.71	+2.5
3,742,957	+		HGI48_RS16705	0.71	+1.4
3,742,957	+		HGI48_RS16705	0.71	-0.4
3,743,109	+		HGI48_RS16705	0.83	+1.0
3,743,109	+		HGI48_RS16705	0.83	+0.1
3,743,109	+		HGI48_RS16705	0.83	+1.5
3,743,109	+		HGI48_RS16705	0.83	+1.2
3,743,110	-		HGI48_RS16705	0.83	+1.0
3,743,202	-				+1.0
3,743,202	-				-1.3
3,743,464	+		HGI48_RS16710	0.11	+1.9
3,743,465	-		HGI48_RS16710	0.11	+1.1
3,743,553	-		HGI48_RS16710	0.18	+0.6
3,743,553	-		HGI48_RS16710	0.18	-0.3
3,743,553	-		HGI48_RS16710	0.18	-0.7
3,743,800	+		HGI48_RS16710	0.38	+0.3
3,743,800	+		HGI48_RS16710	0.38	+1.1
3,743,827	+		HGI48_RS16710	0.40	-0.8
3,743,828	-		HGI48_RS16710	0.40	-1.6
3,743,836	+		HGI48_RS16710	0.41	+0.3
3,743,837	-				+0.7
3,744,055	+		HGI48_RS16710	0.59	+1.0
3,744,055	+		HGI48_RS16710	0.59	+1.1
3,744,083	+		HGI48_RS16710	0.61	+0.9
3,744,180	+		HGI48_RS16710	0.69	+0.7
3,744,181	-		HGI48_RS16710	0.69	-0.3
3,744,181	-				+0.2
3,744,181	-		HGI48_RS16710	0.69	+0.6
3,744,181	-		HGI48_RS16710	0.69	+1.0
3,744,198	+		HGI48_RS16710	0.70	+0.0
3,744,199	-		HGI48_RS16710	0.70	+0.5
3,744,224	+				+3.1
3,744,224	+		HGI48_RS16710	0.72	+0.0
3,744,224	+		HGI48_RS16710	0.72	-0.6
3,744,224	+		HGI48_RS16710	0.72	-1.1
3,744,225	-		HGI48_RS16710	0.72	+0.9
3,744,225	-		HGI48_RS16710	0.72	+0.0
3,744,225	-		HGI48_RS16710	0.72	+1.6