Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15375

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,460,847	-		HGI48_RS15370	0.15	-0.6
3,460,847	-		HGI48_RS15370	0.15	-0.3
3,460,847	-		HGI48_RS15370	0.15	+0.0
3,460,875	+		HGI48_RS15370	0.18	+0.1
3,460,875	+		HGI48_RS15370	0.18	-1.3
3,460,876	-				+0.7
3,460,879	+		HGI48_RS15370	0.18	+0.5
3,460,879	+		HGI48_RS15370	0.18	-0.6
3,461,018	-		HGI48_RS15370	0.33	+0.1
3,461,038	+				-0.9
3,461,039	-		HGI48_RS15370	0.35	+0.2
3,461,039	-		HGI48_RS15370	0.35	+0.7
3,461,139	+		HGI48_RS15370	0.45	+0.4
3,461,218	+		HGI48_RS15370	0.54	+0.7
3,461,242	+		HGI48_RS15370	0.56	+0.7
3,461,242	+		HGI48_RS15370	0.56	+0.0
3,461,275	+		HGI48_RS15370	0.60	-1.6
3,461,275	+		HGI48_RS15370	0.60	+1.0
3,461,491	+		HGI48_RS15370	0.82	-1.4
3,461,546	-		HGI48_RS15370	0.88	-1.3
3,461,548	+		HGI48_RS15370	0.88	+1.6
3,461,548	+		HGI48_RS15370	0.88	-1.3
3,461,548	+		HGI48_RS15370	0.88	+0.3
3,461,548	+		HGI48_RS15370	0.88	-0.9
3,461,548	+		HGI48_RS15370	0.88	-0.3
3,461,548	+				+1.9
3,461,549	-		HGI48_RS15370	0.88	+0.9
3,461,549	-		HGI48_RS15370	0.88	-0.2
3,461,549	-		HGI48_RS15370	0.88	-0.9
3,461,549	-		HGI48_RS15370	0.88	+0.4
3,461,549	-		HGI48_RS15370	0.88	+1.7
3,461,549	-		HGI48_RS15370	0.88	-1.1
3,461,716	+				-0.6
3,461,716	+				+1.0
3,461,716	+				-0.7
3,461,716	+				+1.1
3,461,717	-				-0.6
3,461,717	-				+1.0
3,461,723	-				-0.3
3,461,765	+				-1.6
3,461,766	-				+1.1
3,461,781	+				-2.3
3,461,781	+				+1.1
3,461,782	-				+0.2
3,461,850	+				-1.6
3,461,850	+				+0.4
3,461,850	+				-0.4
3,461,850	+				+0.3
3,461,851	-				-0.9
3,461,851	-				-0.2
3,461,878	+				-0.7
3,461,878	+				-0.9
3,461,916	-				-1.3
3,461,916	-				+1.2
3,461,933	+				-0.7
3,462,350	+		HGI48_RS15375	0.37	+0.0
3,462,377	+		HGI48_RS15375	0.39	+0.1
3,462,377	+		HGI48_RS15375	0.39	-0.8
3,462,378	-		HGI48_RS15375	0.40	+0.3
3,462,379	+		HGI48_RS15375	0.40	+0.2
3,462,379	+		HGI48_RS15375	0.40	+0.2
3,462,379	+		HGI48_RS15375	0.40	-0.5
3,462,379	+		HGI48_RS15375	0.40	+0.5
3,462,380	-		HGI48_RS15375	0.40	-0.2
3,462,380	-		HGI48_RS15375	0.40	-1.5
3,462,380	-		HGI48_RS15375	0.40	+1.5
3,462,380	-		HGI48_RS15375	0.40	+0.4
3,462,434	+		HGI48_RS15375	0.44	-0.0
3,462,434	+				+0.7
3,462,477	+		HGI48_RS15375	0.47	+0.1
3,462,477	+		HGI48_RS15375	0.47	-0.5
3,462,599	+		HGI48_RS15375	0.56	-0.6
3,462,599	+		HGI48_RS15375	0.56	-0.4
3,462,599	+				+0.7
3,462,599	+		HGI48_RS15375	0.56	-2.6
3,462,599	+		HGI48_RS15375	0.56	-3.1
3,462,599	+		HGI48_RS15375	0.56	+0.7
3,462,600	-		HGI48_RS15375	0.56	+0.7
3,462,600	-				+1.7
3,462,600	-		HGI48_RS15375	0.56	-1.9
3,462,600	-		HGI48_RS15375	0.56	-0.2
3,462,632	+		HGI48_RS15375	0.58	-0.3
3,462,632	+		HGI48_RS15375	0.58	+2.4
3,462,632	+		HGI48_RS15375	0.58	+1.0
3,462,632	+		HGI48_RS15375	0.58	+0.4
3,462,633	-		HGI48_RS15375	0.58	+0.4
3,462,633	-		HGI48_RS15375	0.58	-0.6
3,462,633	-		HGI48_RS15375	0.58	-1.3
3,462,734	+		HGI48_RS15375	0.65	-0.3
3,462,734	+		HGI48_RS15375	0.65	+0.2
3,462,735	-		HGI48_RS15375	0.65	+0.3
3,462,735	-		HGI48_RS15375	0.65	-1.0
3,462,737	+		HGI48_RS15375	0.66	-2.1
3,462,759	+		HGI48_RS15375	0.67	+1.0
3,462,759	+		HGI48_RS15375	0.67	-0.3
3,462,759	+		HGI48_RS15375	0.67	+0.4
3,462,760	-		HGI48_RS15375	0.67	-0.5
3,462,887	+		HGI48_RS15375	0.76	+0.3
3,462,888	-		HGI48_RS15375	0.77	-0.2
3,462,896	+		HGI48_RS15375	0.77	-0.3
3,462,896	+		HGI48_RS15375	0.77	+0.7
3,462,902	+		HGI48_RS15375	0.78	-0.3
3,463,051	+		HGI48_RS15375	0.88	-1.6
3,463,118	+				-1.3
3,463,118	+				-0.4
3,463,118	+				-1.1
3,463,118	+				+0.4
3,463,118	+				-0.3
3,463,118	+				+0.4
3,463,118	+				+0.3
3,463,118	+				-0.0
3,463,119	-				-0.9
3,463,119	-				-1.9
3,463,151	+				-2.1
3,463,220	-				+0.4
3,463,225	+				+0.1
3,463,288	+				-0.3
3,463,289	-				-0.9
3,463,289	-				-1.2
3,463,321	+				+3.0
3,463,322	-				-1.6
3,463,327	+				-0.4
3,463,327	+				-0.6
3,463,327	+				+0.5
3,463,328	-				-1.6
3,463,328	-				+0.4
3,463,328	-				+0.1
3,463,331	+				-0.0
3,463,331	+				+0.7
3,463,331	+				-1.6
3,463,331	+				+0.4
3,463,331	+				-1.3
3,463,331	+				+1.0
3,463,331	+				-0.5
3,463,332	-				-0.1
3,463,332	-				-0.3
3,463,332	-				-1.3
3,463,332	-				+0.2
3,463,332	-				+0.1
3,463,332	-				-2.1
3,463,332	-				-1.0
3,463,332	-				-0.6
3,463,336	+				-0.5
3,463,336	+				-0.0
3,463,337	-				-0.3
3,463,339	+				+0.2
3,463,430	-				-0.4
3,463,430	-				+0.7
3,463,465	+		HGI48_RS15380	0.17	+0.9
3,463,465	+		HGI48_RS15380	0.17	+0.2
3,463,466	-		HGI48_RS15380	0.17	+0.3
3,463,469	+		HGI48_RS15380	0.18	-0.3
3,463,469	+				-0.9
3,463,469	+		HGI48_RS15380	0.18	-0.3
3,463,470	-		HGI48_RS15380	0.18	+0.7
3,463,491	-		HGI48_RS15380	0.24	+0.4
3,463,534	+		HGI48_RS15380	0.34	+2.9
3,463,534	+		HGI48_RS15380	0.34	-0.5
3,463,534	+		HGI48_RS15380	0.34	-2.1
3,463,534	+		HGI48_RS15380	0.34	-0.9
3,463,534	+		HGI48_RS15380	0.34	-0.0
3,463,534	+		HGI48_RS15380	0.34	-0.9
3,463,535	-		HGI48_RS15380	0.34	+0.0
3,463,543	+		HGI48_RS15380	0.36	-0.3
3,463,543	+		HGI48_RS15380	0.36	+0.7
3,463,544	-		HGI48_RS15380	0.37	-1.4
3,463,544	-		HGI48_RS15380	0.37	-0.6
3,463,544	-		HGI48_RS15380	0.37	+0.5
3,463,577	-		HGI48_RS15380	0.45	-0.3
3,463,577	-		HGI48_RS15380	0.45	-0.0
3,463,606	+		HGI48_RS15380	0.52	-2.1
3,463,606	+		HGI48_RS15380	0.52	-2.1
3,463,607	-		HGI48_RS15380	0.52	-0.1
3,463,607	-		HGI48_RS15380	0.52	-0.9
3,463,615	+		HGI48_RS15380	0.54	-0.5
3,463,616	-		HGI48_RS15380	0.54	+1.2
3,463,642	+				-0.9
3,463,642	+		HGI48_RS15380	0.61	+1.5
3,463,643	-		HGI48_RS15380	0.61	-0.8
3,463,643	-		HGI48_RS15380	0.61	+0.4
3,463,643	-		HGI48_RS15380	0.61	-0.0
3,463,753	-		HGI48_RS15380	0.88	+0.2
3,463,753	-		HGI48_RS15380	0.88	+0.3
3,463,770	-				+0.7
3,463,872	-				-0.5
3,463,916	+				-1.4
3,463,963	-				-0.5
3,463,970	-				-2.3
3,463,970	-				-0.5
3,463,970	-				-0.4
3,463,970	-				-0.4
3,464,100	-		HGI48_RS15385	0.50	-0.6
3,464,190	-				+1.4
3,464,204	+				+0.4