Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14845

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,345,706	+		HGI48_RS14840	0.53	-0.5
3,345,747	-		HGI48_RS14840	0.55	-1.5
3,345,820	+		HGI48_RS14840	0.59	+0.4
3,346,015	+		HGI48_RS14840	0.70	+0.7
3,346,018	+		HGI48_RS14840	0.70	-0.6
3,346,019	-		HGI48_RS14840	0.70	+1.3
3,346,025	-		HGI48_RS14840	0.70	-2.1
3,346,398	+				+1.1
3,346,399	-		HGI48_RS14840	0.90	+0.2
3,346,403	+				-0.1
3,346,404	-				-0.1
3,346,466	-				+0.7
3,346,486	+				-1.9
3,346,582	-				-0.3
3,346,637	+				-0.5
3,346,689	-				+0.8
3,346,726	+				-1.5
3,346,730	+				-0.6
3,346,816	+		HGI48_RS14845	0.13	-1.6
3,346,856	+		HGI48_RS14845	0.15	-0.4
3,346,856	+		HGI48_RS14845	0.15	+1.5
3,346,881	-		HGI48_RS14845	0.17	+0.0
3,346,943	+		HGI48_RS14845	0.21	-0.6
3,347,030	-		HGI48_RS14845	0.26	-2.9
3,347,064	+		HGI48_RS14845	0.28	-0.3
3,347,065	-				+1.3
3,347,065	-				+1.1
3,347,075	-		HGI48_RS14845	0.29	-0.7
3,347,075	-		HGI48_RS14845	0.29	-2.1
3,347,127	-		HGI48_RS14845	0.32	+0.2
3,347,162	-				-0.3
3,347,174	+		HGI48_RS14845	0.35	+0.9
3,347,232	-		HGI48_RS14845	0.38	-0.5
3,347,262	-		HGI48_RS14845	0.40	+1.0
3,347,352	+		HGI48_RS14845	0.46	+1.0
3,347,352	+		HGI48_RS14845	0.46	+0.3
3,347,352	+		HGI48_RS14845	0.46	-0.2
3,347,352	+		HGI48_RS14845	0.46	-1.1
3,347,352	+		HGI48_RS14845	0.46	-1.3
3,347,352	+				+1.3
3,347,352	+		HGI48_RS14845	0.46	-0.3
3,347,353	-		HGI48_RS14845	0.46	-1.6
3,347,353	-		HGI48_RS14845	0.46	-0.6
3,347,353	-		HGI48_RS14845	0.46	+0.3
3,347,353	-		HGI48_RS14845	0.46	+0.1
3,347,353	-		HGI48_RS14845	0.46	+0.1
3,347,353	-		HGI48_RS14845	0.46	+1.2
3,347,353	-		HGI48_RS14845	0.46	+0.7
3,347,353	-		HGI48_RS14845	0.46	-0.2
3,347,357	-				-0.9
3,347,372	+		HGI48_RS14845	0.47	+0.2
3,347,372	+		HGI48_RS14845	0.47	-0.5
3,347,373	-		HGI48_RS14845	0.47	-0.3
3,347,408	+		HGI48_RS14845	0.49	-1.6
3,347,408	+		HGI48_RS14845	0.49	-0.1
3,347,409	-		HGI48_RS14845	0.49	-2.3
3,347,409	-		HGI48_RS14845	0.49	-1.9
3,347,409	-		HGI48_RS14845	0.49	+1.2
3,347,413	+		HGI48_RS14845	0.49	-2.3
3,347,473	+		HGI48_RS14845	0.53	-1.5
3,347,480	-		HGI48_RS14845	0.53	-1.6
3,347,536	+		HGI48_RS14845	0.57	-0.6
3,347,537	-		HGI48_RS14845	0.57	+0.3
3,347,567	+		HGI48_RS14845	0.59	-2.5
3,347,568	-		HGI48_RS14845	0.59	+0.1
3,347,576	+		HGI48_RS14845	0.59	+0.5
3,347,576	+		HGI48_RS14845	0.59	-2.6
3,347,576	+		HGI48_RS14845	0.59	+0.5
3,347,580	+		HGI48_RS14845	0.59	-0.1
3,347,580	+		HGI48_RS14845	0.59	+1.4
3,347,581	-		HGI48_RS14845	0.59	-0.1
3,347,600	+		HGI48_RS14845	0.61	-0.2
3,347,600	+		HGI48_RS14845	0.61	-1.8
3,347,601	-		HGI48_RS14845	0.61	-1.3
3,347,639	+		HGI48_RS14845	0.63	-0.6
3,347,639	+				-0.9
3,347,639	+		HGI48_RS14845	0.63	-0.8
3,347,640	-		HGI48_RS14845	0.63	+0.5
3,347,668	+		HGI48_RS14845	0.65	+0.7
3,347,669	-		HGI48_RS14845	0.65	-0.7
3,347,669	-		HGI48_RS14845	0.65	+0.1
3,347,669	-		HGI48_RS14845	0.65	+1.3
3,347,681	+		HGI48_RS14845	0.65	-0.3
3,347,681	+		HGI48_RS14845	0.65	+1.2
3,347,682	-		HGI48_RS14845	0.66	+0.7
3,347,682	-		HGI48_RS14845	0.66	-0.3
3,347,748	-		HGI48_RS14845	0.70	+1.0
3,347,815	+				+1.1
3,347,815	+		HGI48_RS14845	0.74	+0.4
3,347,821	-		HGI48_RS14845	0.74	-0.1
3,347,866	+				+0.1
3,347,867	-		HGI48_RS14845	0.77	-0.3
3,347,867	-		HGI48_RS14845	0.77	+0.5
3,347,867	-		HGI48_RS14845	0.77	-1.3
3,347,876	-		HGI48_RS14845	0.77	+2.0
3,347,876	-		HGI48_RS14845	0.77	-2.1
3,347,876	-		HGI48_RS14845	0.77	-2.1
3,347,876	-		HGI48_RS14845	0.77	-1.9
3,347,879	+		HGI48_RS14845	0.77	-0.5
3,347,932	+		HGI48_RS14845	0.81	+0.2
3,347,932	+		HGI48_RS14845	0.81	+0.7
3,347,932	+		HGI48_RS14845	0.81	-0.7
3,347,932	+		HGI48_RS14845	0.81	+0.4
3,347,932	+		HGI48_RS14845	0.81	-0.3
3,347,933	-		HGI48_RS14845	0.81	+0.4
3,347,933	-		HGI48_RS14845	0.81	+0.7
3,347,933	-				+2.3
3,347,933	-		HGI48_RS14845	0.81	+0.2
3,347,933	-		HGI48_RS14845	0.81	-1.3
3,347,999	+		HGI48_RS14845	0.85	+0.0
3,348,008	-				+1.7
3,348,017	+		HGI48_RS14845	0.86	-1.6
3,348,017	+		HGI48_RS14845	0.86	+0.5
3,348,018	-		HGI48_RS14845	0.86	-0.1
3,348,018	-				+1.7
3,348,018	-		HGI48_RS14845	0.86	-0.4
3,348,018	-		HGI48_RS14845	0.86	-1.5
3,348,067	+		HGI48_RS14845	0.89	+0.5
3,348,068	-		HGI48_RS14845	0.89	-0.5
3,348,120	+				+0.5
3,348,120	+				+0.7
3,348,131	+				-2.3
3,348,131	+				-0.5
3,348,131	+				-0.6
3,348,131	+				-0.8
3,348,131	+				-1.8
3,348,131	+				+1.3
3,348,131	+				-0.1
3,348,131	+				+1.9
3,348,131	+				-1.3
3,348,131	+				+0.3
3,348,132	-				-0.8
3,348,132	-				-2.3
3,348,132	-				-0.6
3,348,132	-				-1.8
3,348,132	-				+0.4
3,348,132	-				+1.3
3,348,132	-				+0.7
3,348,132	-				+0.1
3,348,132	-				-0.3
3,348,132	-				-2.1
3,348,132	-				-0.7
3,348,132	-				-2.5
3,348,132	-				+1.7
3,348,134	-				-1.1
3,348,134	-				-0.3
3,348,134	-				+0.1
3,348,181	-				-0.3
3,348,181	-				+0.1
3,348,181	-				+0.7
3,348,218	+				+0.1
3,348,218	+				-0.7
3,348,218	+				-0.5
3,348,219	-				-0.4
3,348,219	-				+0.4
3,348,280	+				-0.4
3,348,281	-				-2.5
3,348,318	+				-0.1
3,348,375	+				+0.9
3,348,375	+				+0.7
3,348,375	+				-0.6
3,348,408	+				+1.3
3,348,447	+				-0.3
3,348,447	+		HGI48_RS14850	0.14	-0.1
3,348,559	+		HGI48_RS14850	0.24	+1.3
3,348,568	+		HGI48_RS14850	0.24	+1.3
3,348,579	+		HGI48_RS14850	0.25	+0.9
3,348,585	+				+1.1
3,348,585	+		HGI48_RS14850	0.26	+0.4
3,348,585	+		HGI48_RS14850	0.26	-0.6
3,348,620	+		HGI48_RS14850	0.29	+1.4
3,348,681	+		HGI48_RS14850	0.34	+0.1
3,348,730	+		HGI48_RS14850	0.38	-0.9
3,348,764	+		HGI48_RS14850	0.41	+0.1
3,348,837	+		HGI48_RS14850	0.47	+0.7
3,348,837	+				-0.9
3,348,837	+				+1.4
3,348,852	+		HGI48_RS14850	0.48	+0.8
3,348,852	+		HGI48_RS14850	0.48	-0.1
3,348,910	+		HGI48_RS14850	0.53	+0.8
3,348,955	+		HGI48_RS14850	0.56	-1.6
3,348,955	+		HGI48_RS14850	0.56	+2.3
3,348,959	+				+1.1
3,348,959	+		HGI48_RS14850	0.57	+1.1
3,348,959	+		HGI48_RS14850	0.57	+1.7
3,348,959	+		HGI48_RS14850	0.57	-0.3
3,348,959	+		HGI48_RS14850	0.57	-0.3
3,348,959	+		HGI48_RS14850	0.57	+0.9
3,348,959	+		HGI48_RS14850	0.57	-0.6
3,348,959	+		HGI48_RS14850	0.57	-0.5