Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS14010 and HGI48_RS14015 are separated by 138 nucleotides HGI48_RS14015 and HGI48_RS14020 are separated by 733 nucleotides
HGI48_RS14010: HGI48_RS14010 - alkene reductase, at 3,133,524 to 3,134,615
_RS14010
HGI48_RS14015: HGI48_RS14015 - TetR/AcrR family transcriptional regulator, at 3,134,754 to 3,135,314
_RS14015
HGI48_RS14020: HGI48_RS14020 - glycosyltransferase, at 3,136,048 to 3,137,325
_RS14020
Position (kb) 3134
3135
3136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3133.777 kb on + strand, within HGI48_RS14010 at 3133.791 kb on + strand, within HGI48_RS14010 at 3133.791 kb on + strand, within HGI48_RS14010 at 3133.791 kb on + strand, within HGI48_RS14010 at 3133.791 kb on + strand, within HGI48_RS14010 at 3133.791 kb on + strand, within HGI48_RS14010 at 3133.792 kb on - strand, within HGI48_RS14010 at 3133.792 kb on - strand, within HGI48_RS14010 at 3133.834 kb on + strand, within HGI48_RS14010 at 3133.834 kb on + strand, within HGI48_RS14010 at 3133.845 kb on + strand, within HGI48_RS14010 at 3133.846 kb on - strand, within HGI48_RS14010 at 3133.846 kb on - strand, within HGI48_RS14010 at 3133.850 kb on + strand, within HGI48_RS14010 at 3133.871 kb on - strand, within HGI48_RS14010 at 3133.871 kb on - strand, within HGI48_RS14010 at 3133.876 kb on + strand, within HGI48_RS14010 at 3133.876 kb on + strand, within HGI48_RS14010 at 3133.877 kb on - strand, within HGI48_RS14010 at 3133.911 kb on - strand at 3133.987 kb on - strand, within HGI48_RS14010 at 3133.987 kb on - strand, within HGI48_RS14010 at 3134.033 kb on + strand, within HGI48_RS14010 at 3134.033 kb on + strand, within HGI48_RS14010 at 3134.034 kb on - strand, within HGI48_RS14010 at 3134.074 kb on + strand, within HGI48_RS14010 at 3134.196 kb on + strand, within HGI48_RS14010 at 3134.196 kb on + strand, within HGI48_RS14010 at 3134.197 kb on - strand, within HGI48_RS14010 at 3134.197 kb on - strand, within HGI48_RS14010 at 3134.286 kb on + strand, within HGI48_RS14010 at 3134.286 kb on + strand, within HGI48_RS14010 at 3134.286 kb on + strand, within HGI48_RS14010 at 3134.287 kb on - strand at 3134.287 kb on - strand, within HGI48_RS14010 at 3134.287 kb on - strand, within HGI48_RS14010 at 3134.287 kb on - strand, within HGI48_RS14010 at 3134.304 kb on + strand, within HGI48_RS14010 at 3134.304 kb on + strand, within HGI48_RS14010 at 3134.304 kb on + strand at 3134.305 kb on - strand, within HGI48_RS14010 at 3134.305 kb on - strand, within HGI48_RS14010 at 3134.319 kb on + strand, within HGI48_RS14010 at 3134.319 kb on + strand at 3134.320 kb on - strand, within HGI48_RS14010 at 3134.320 kb on - strand, within HGI48_RS14010 at 3134.320 kb on - strand, within HGI48_RS14010 at 3134.325 kb on + strand, within HGI48_RS14010 at 3134.325 kb on + strand at 3134.392 kb on + strand at 3134.392 kb on + strand, within HGI48_RS14010 at 3134.393 kb on - strand, within HGI48_RS14010 at 3134.434 kb on - strand at 3134.434 kb on - strand, within HGI48_RS14010 at 3134.451 kb on - strand, within HGI48_RS14010 at 3134.482 kb on + strand, within HGI48_RS14010 at 3134.531 kb on + strand at 3134.555 kb on + strand at 3134.555 kb on + strand at 3134.556 kb on - strand at 3134.556 kb on - strand at 3134.556 kb on - strand at 3134.556 kb on - strand at 3134.585 kb on + strand at 3134.588 kb on - strand at 3134.598 kb on + strand at 3134.630 kb on + strand at 3134.631 kb on - strand at 3134.641 kb on + strand at 3134.697 kb on - strand at 3134.719 kb on + strand at 3134.719 kb on + strand at 3134.719 kb on + strand at 3134.719 kb on + strand at 3134.719 kb on + strand at 3134.720 kb on - strand at 3134.720 kb on - strand at 3134.836 kb on - strand, within HGI48_RS14015 at 3134.845 kb on + strand, within HGI48_RS14015 at 3134.845 kb on + strand, within HGI48_RS14015 at 3134.845 kb on + strand, within HGI48_RS14015 at 3134.845 kb on + strand, within HGI48_RS14015 at 3134.845 kb on + strand, within HGI48_RS14015 at 3134.846 kb on - strand, within HGI48_RS14015 at 3134.846 kb on - strand, within HGI48_RS14015 at 3134.846 kb on - strand, within HGI48_RS14015 at 3134.846 kb on - strand, within HGI48_RS14015 at 3134.849 kb on + strand, within HGI48_RS14015 at 3134.849 kb on + strand, within HGI48_RS14015 at 3134.850 kb on - strand at 3134.850 kb on - strand, within HGI48_RS14015 at 3134.850 kb on - strand at 3134.852 kb on - strand, within HGI48_RS14015 at 3134.896 kb on - strand, within HGI48_RS14015 at 3134.896 kb on - strand, within HGI48_RS14015 at 3134.969 kb on + strand, within HGI48_RS14015 at 3134.970 kb on - strand, within HGI48_RS14015 at 3134.970 kb on - strand, within HGI48_RS14015 at 3135.003 kb on + strand, within HGI48_RS14015 at 3135.003 kb on + strand, within HGI48_RS14015 at 3135.003 kb on + strand, within HGI48_RS14015 at 3135.003 kb on + strand, within HGI48_RS14015 at 3135.006 kb on + strand, within HGI48_RS14015 at 3135.006 kb on + strand, within HGI48_RS14015 at 3135.006 kb on + strand, within HGI48_RS14015 at 3135.006 kb on + strand at 3135.006 kb on + strand at 3135.007 kb on - strand, within HGI48_RS14015 at 3135.007 kb on - strand, within HGI48_RS14015 at 3135.007 kb on - strand, within HGI48_RS14015 at 3135.007 kb on - strand, within HGI48_RS14015 at 3135.007 kb on - strand, within HGI48_RS14015 at 3135.007 kb on - strand, within HGI48_RS14015 at 3135.010 kb on + strand, within HGI48_RS14015 at 3135.010 kb on + strand, within HGI48_RS14015 at 3135.010 kb on + strand at 3135.032 kb on + strand at 3135.032 kb on + strand at 3135.071 kb on + strand, within HGI48_RS14015 at 3135.071 kb on + strand, within HGI48_RS14015 at 3135.095 kb on + strand, within HGI48_RS14015 at 3135.096 kb on - strand, within HGI48_RS14015 at 3135.096 kb on - strand at 3135.140 kb on - strand, within HGI48_RS14015 at 3135.372 kb on + strand at 3135.372 kb on + strand at 3135.373 kb on - strand at 3135.375 kb on + strand at 3135.401 kb on + strand at 3135.401 kb on + strand at 3135.402 kb on - strand at 3135.402 kb on - strand at 3135.402 kb on - strand at 3135.402 kb on - strand at 3135.407 kb on + strand at 3135.408 kb on - strand at 3135.561 kb on + strand at 3135.713 kb on + strand at 3135.715 kb on + strand at 3135.715 kb on + strand at 3135.715 kb on + strand at 3135.716 kb on - strand at 3135.716 kb on - strand at 3135.716 kb on - strand at 3135.716 kb on - strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.717 kb on + strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.718 kb on - strand at 3135.719 kb on + strand at 3135.719 kb on + strand at 3135.720 kb on - strand at 3135.720 kb on - strand at 3135.720 kb on - strand at 3135.720 kb on - strand at 3135.720 kb on - strand at 3135.720 kb on - strand at 3135.721 kb on + strand at 3135.721 kb on + strand at 3135.722 kb on - strand at 3135.724 kb on - strand at 3135.752 kb on - strand at 3135.755 kb on - strand at 3135.782 kb on + strand at 3135.783 kb on - strand at 3135.783 kb on - strand at 3135.790 kb on + strand at 3135.804 kb on + strand at 3135.804 kb on + strand at 3135.805 kb on - strand at 3135.838 kb on + strand at 3135.838 kb on + strand at 3135.839 kb on - strand at 3135.842 kb on - strand at 3135.845 kb on - strand at 3135.959 kb on + strand at 3135.959 kb on + strand at 3135.978 kb on + strand at 3135.978 kb on + strand at 3135.978 kb on + strand at 3135.979 kb on - strand at 3135.979 kb on - strand at 3135.979 kb on - strand at 3135.979 kb on - strand at 3135.990 kb on + strand at 3135.990 kb on + strand at 3135.991 kb on - strand at 3136.055 kb on + strand at 3136.056 kb on - strand at 3136.090 kb on + strand at 3136.091 kb on - strand at 3136.107 kb on - strand at 3136.141 kb on + strand at 3136.142 kb on - strand at 3136.152 kb on + strand at 3136.153 kb on - strand at 3136.191 kb on + strand, within HGI48_RS14020 at 3136.192 kb on - strand, within HGI48_RS14020 at 3136.192 kb on - strand, within HGI48_RS14020 at 3136.222 kb on + strand, within HGI48_RS14020 at 3136.227 kb on - strand, within HGI48_RS14020 at 3136.227 kb on - strand, within HGI48_RS14020
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 3,133,777 + HGI48_RS14010 0.23 -0.0 3,133,791 + HGI48_RS14010 0.24 -2.8 3,133,791 + HGI48_RS14010 0.24 +0.3 3,133,791 + HGI48_RS14010 0.24 -1.0 3,133,791 + HGI48_RS14010 0.24 -1.2 3,133,791 + HGI48_RS14010 0.24 +0.1 3,133,792 - HGI48_RS14010 0.25 -1.4 3,133,792 - HGI48_RS14010 0.25 +0.2 3,133,834 + HGI48_RS14010 0.28 -2.2 3,133,834 + HGI48_RS14010 0.28 -2.6 3,133,845 + HGI48_RS14010 0.29 -0.1 3,133,846 - HGI48_RS14010 0.29 +2.1 3,133,846 - HGI48_RS14010 0.29 +0.6 3,133,850 + HGI48_RS14010 0.30 -0.4 3,133,871 - HGI48_RS14010 0.32 +0.1 3,133,871 - HGI48_RS14010 0.32 -2.0 3,133,876 + HGI48_RS14010 0.32 +0.1 3,133,876 + HGI48_RS14010 0.32 -0.1 3,133,877 - HGI48_RS14010 0.32 -1.4 3,133,911 - +1.9 3,133,987 - HGI48_RS14010 0.42 +0.1 3,133,987 - HGI48_RS14010 0.42 -0.4 3,134,033 + HGI48_RS14010 0.47 -0.2 3,134,033 + HGI48_RS14010 0.47 -0.7 3,134,034 - HGI48_RS14010 0.47 +2.4 3,134,074 + HGI48_RS14010 0.50 +1.1 3,134,196 + HGI48_RS14010 0.62 -0.8 3,134,196 + HGI48_RS14010 0.62 +0.2 3,134,197 - HGI48_RS14010 0.62 -0.4 3,134,197 - HGI48_RS14010 0.62 +0.7 3,134,286 + HGI48_RS14010 0.70 -0.7 3,134,286 + HGI48_RS14010 0.70 +0.2 3,134,286 + HGI48_RS14010 0.70 -0.2 3,134,287 - -0.4 3,134,287 - HGI48_RS14010 0.70 -1.7 3,134,287 - HGI48_RS14010 0.70 +0.2 3,134,287 - HGI48_RS14010 0.70 -0.4 3,134,304 + HGI48_RS14010 0.71 -1.4 3,134,304 + HGI48_RS14010 0.71 -0.7 3,134,304 + +1.9 3,134,305 - HGI48_RS14010 0.72 +0.3 3,134,305 - HGI48_RS14010 0.72 +0.7 3,134,319 + HGI48_RS14010 0.73 +0.1 3,134,319 + +1.2 3,134,320 - HGI48_RS14010 0.73 +0.4 3,134,320 - HGI48_RS14010 0.73 -1.4 3,134,320 - HGI48_RS14010 0.73 -0.7 3,134,325 + HGI48_RS14010 0.73 +1.9 3,134,325 + -1.0 3,134,392 + -1.0 3,134,392 + HGI48_RS14010 0.79 -0.1 3,134,393 - HGI48_RS14010 0.80 +0.6 3,134,434 - +1.4 3,134,434 - HGI48_RS14010 0.83 +0.9 3,134,451 - HGI48_RS14010 0.85 -1.7 3,134,482 + HGI48_RS14010 0.88 -1.4 3,134,531 + -2.8 3,134,555 + +1.2 3,134,555 + -0.1 3,134,556 - +0.9 3,134,556 - -0.4 3,134,556 - -0.6 3,134,556 - +1.5 3,134,585 + +0.6 3,134,588 - +1.2 3,134,598 + +0.5 3,134,630 + -0.3 3,134,631 - +0.4 3,134,641 + -0.1 3,134,697 - +1.3 3,134,719 + -0.6 3,134,719 + -0.0 3,134,719 + +0.0 3,134,719 + -1.4 3,134,719 + +2.2 3,134,720 - -2.0 3,134,720 - -0.2 3,134,836 - HGI48_RS14015 0.15 +0.0 3,134,845 + HGI48_RS14015 0.16 -1.7 3,134,845 + HGI48_RS14015 0.16 -1.7 3,134,845 + HGI48_RS14015 0.16 -0.1 3,134,845 + HGI48_RS14015 0.16 +0.4 3,134,845 + HGI48_RS14015 0.16 -0.6 3,134,846 - HGI48_RS14015 0.16 -0.2 3,134,846 - HGI48_RS14015 0.16 -2.2 3,134,846 - HGI48_RS14015 0.16 -0.6 3,134,846 - HGI48_RS14015 0.16 +1.6 3,134,849 + HGI48_RS14015 0.17 -2.2 3,134,849 + HGI48_RS14015 0.17 +1.4 3,134,850 - -1.0 3,134,850 - HGI48_RS14015 0.17 -0.2 3,134,850 - +1.0 3,134,852 - HGI48_RS14015 0.17 -0.9 3,134,896 - HGI48_RS14015 0.25 +0.9 3,134,896 - HGI48_RS14015 0.25 +0.0 3,134,969 + HGI48_RS14015 0.38 -1.0 3,134,970 - HGI48_RS14015 0.39 -0.1 3,134,970 - HGI48_RS14015 0.39 -0.4 3,135,003 + HGI48_RS14015 0.44 -1.7 3,135,003 + HGI48_RS14015 0.44 -0.0 3,135,003 + HGI48_RS14015 0.44 +0.5 3,135,003 + HGI48_RS14015 0.44 +0.9 3,135,006 + HGI48_RS14015 0.45 +0.2 3,135,006 + HGI48_RS14015 0.45 -2.0 3,135,006 + HGI48_RS14015 0.45 -0.6 3,135,006 + +0.0 3,135,006 + +1.8 3,135,007 - HGI48_RS14015 0.45 -0.4 3,135,007 - HGI48_RS14015 0.45 -3.0 3,135,007 - HGI48_RS14015 0.45 -0.7 3,135,007 - HGI48_RS14015 0.45 -0.4 3,135,007 - HGI48_RS14015 0.45 -1.7 3,135,007 - HGI48_RS14015 0.45 +0.4 3,135,010 + HGI48_RS14015 0.46 -0.5 3,135,010 + HGI48_RS14015 0.46 +0.2 3,135,010 + +0.0 3,135,032 + -0.4 3,135,032 + -1.0 3,135,071 + HGI48_RS14015 0.57 +0.4 3,135,071 + HGI48_RS14015 0.57 -0.4 3,135,095 + HGI48_RS14015 0.61 -1.4 3,135,096 - HGI48_RS14015 0.61 -2.2 3,135,096 - -1.0 3,135,140 - HGI48_RS14015 0.69 +0.6 3,135,372 + +0.3 3,135,372 + +0.3 3,135,373 - +1.1 3,135,375 + -0.4 3,135,401 + -1.7 3,135,401 + -1.5 3,135,402 - +0.9 3,135,402 - +0.0 3,135,402 - +1.6 3,135,402 - +1.4 3,135,407 + +1.6 3,135,408 - -1.7 3,135,561 + +0.1 3,135,713 + -0.8 3,135,715 + -1.0 3,135,715 + +1.1 3,135,715 + -0.1 3,135,716 - -1.1 3,135,716 - -0.3 3,135,716 - -0.7 3,135,716 - -0.5 3,135,717 + -2.0 3,135,717 + -0.2 3,135,717 + +0.0 3,135,717 + -1.4 3,135,717 + +0.6 3,135,717 + +0.6 3,135,717 + -1.4 3,135,717 + -0.4 3,135,717 + +0.2 3,135,718 - +2.8 3,135,718 - +0.6 3,135,718 - +0.8 3,135,718 - -1.7 3,135,718 - -0.4 3,135,718 - -1.0 3,135,718 - +0.8 3,135,718 - +0.8 3,135,718 - -0.6 3,135,718 - -0.7 3,135,718 - +1.8 3,135,719 + -1.0 3,135,719 + -1.4 3,135,720 - +0.6 3,135,720 - -0.5 3,135,720 - +0.2 3,135,720 - -1.4 3,135,720 - +0.0 3,135,720 - +1.6 3,135,721 + -0.1 3,135,721 + -1.0 3,135,722 - +0.8 3,135,724 - -0.6 3,135,752 - +0.3 3,135,755 - -0.2 3,135,782 + -0.5 3,135,783 - +0.6 3,135,783 - +1.4 3,135,790 + -0.7 3,135,804 + +1.2 3,135,804 + +0.6 3,135,805 - -0.5 3,135,838 + -0.4 3,135,838 + +0.6 3,135,839 - -2.0 3,135,842 - -0.2 3,135,845 - +0.3 3,135,959 + -0.7 3,135,959 + +0.0 3,135,978 + +0.1 3,135,978 + +0.1 3,135,978 + -0.3 3,135,979 - -0.2 3,135,979 - -0.4 3,135,979 - -2.2 3,135,979 - -0.2 3,135,990 + +1.6 3,135,990 + +0.2 3,135,991 - -1.4 3,136,055 + -0.0 3,136,056 - -0.5 3,136,090 + +1.8 3,136,091 - +0.2 3,136,107 - -1.3 3,136,141 + +0.5 3,136,142 - +0.4 3,136,152 + -1.0 3,136,153 - +0.9 3,136,191 + HGI48_RS14020 0.11 -0.4 3,136,192 - HGI48_RS14020 0.11 -0.3 3,136,192 - HGI48_RS14020 0.11 +1.0 3,136,222 + HGI48_RS14020 0.14 -1.2 3,136,227 - HGI48_RS14020 0.14 -0.3 3,136,227 - HGI48_RS14020 0.14 -1.4
Or see this region's nucleotide sequence