Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11980

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,610,753	+		HGI48_RS11970	0.68	+0.1
2,610,753	+		HGI48_RS11970	0.68	+0.6
2,610,754	-		HGI48_RS11970	0.68	-0.1
2,610,820	+		HGI48_RS11970	0.84	+0.7
2,610,820	+		HGI48_RS11970	0.84	+0.2
2,610,894	-				-2.0
2,610,894	-				+2.9
2,610,903	+				-0.0
2,610,903	+				+0.3
2,610,903	+				+0.6
2,610,904	-				+0.1
2,610,904	-				+0.1
2,610,904	-				-0.9
2,610,904	-				+1.2
2,610,904	-				+0.8
2,610,904	-				+1.0
2,610,905	+				-0.2
2,610,905	+				-0.4
2,610,906	-				+0.1
2,610,906	-				-0.4
2,610,906	-				-2.0
2,610,942	+				+1.1
2,610,943	-				+0.4
2,610,943	-				+0.5
2,611,008	+				+2.4
2,611,008	+				-0.3
2,611,009	-				+0.6
2,611,079	+		HGI48_RS11975	0.13	-2.0
2,611,080	-		HGI48_RS11975	0.13	+1.1
2,611,084	-		HGI48_RS11975	0.14	-0.4
2,611,135	+		HGI48_RS11975	0.23	-0.6
2,611,165	+		HGI48_RS11975	0.28	+0.2
2,611,165	+		HGI48_RS11975	0.28	+0.1
2,611,165	+		HGI48_RS11975	0.28	+0.7
2,611,166	-		HGI48_RS11975	0.28	+0.6
2,611,166	-		HGI48_RS11975	0.28	-1.0
2,611,166	-		HGI48_RS11975	0.28	-0.9
2,611,166	-		HGI48_RS11975	0.28	-0.4
2,611,166	-		HGI48_RS11975	0.28	-0.7
2,611,188	+		HGI48_RS11975	0.31	-1.2
2,611,189	-		HGI48_RS11975	0.32	+0.1
2,611,189	-		HGI48_RS11975	0.32	-1.0
2,611,189	-		HGI48_RS11975	0.32	-2.6
2,611,250	+		HGI48_RS11975	0.42	+0.9
2,611,250	+		HGI48_RS11975	0.42	-1.8
2,611,251	-				+1.0
2,611,344	+		HGI48_RS11975	0.58	+0.4
2,611,344	+		HGI48_RS11975	0.58	+0.4
2,611,344	+				+1.0
2,611,345	-		HGI48_RS11975	0.58	-1.8
2,611,370	-		HGI48_RS11975	0.62	-0.2
2,611,370	-		HGI48_RS11975	0.62	-3.8
2,611,370	-		HGI48_RS11975	0.62	-0.8
2,611,370	-		HGI48_RS11975	0.62	+0.0
2,611,516	+				-0.0
2,611,516	+		HGI48_RS11975	0.86	+0.6
2,611,516	+		HGI48_RS11975	0.86	+0.7
2,611,516	+				-0.0
2,611,516	+		HGI48_RS11975	0.86	+1.0
2,611,517	-		HGI48_RS11975	0.87	-0.4
2,611,524	+		HGI48_RS11975	0.88	+0.0
2,611,524	+		HGI48_RS11975	0.88	-2.7
2,611,525	-		HGI48_RS11975	0.88	-0.8
2,611,544	+				+1.1
2,611,545	-				-0.4
2,611,590	+				+0.4
2,611,590	+				+1.8
2,611,590	+				+1.0
2,611,591	-				+0.8
2,611,591	-				-0.5
2,611,605	+				-2.0
2,611,606	-				-0.4
2,611,606	-				+0.2
2,611,606	-				-0.2
2,611,606	-				-0.1
2,611,606	-				-0.0
2,611,609	-				-1.8
2,611,698	-				+0.1
2,611,710	+				+1.8
2,611,710	+				+0.6
2,611,710	+				-1.0
2,611,711	-				+1.5
2,611,712	+				+0.6
2,611,713	-				+0.8
2,611,713	-				+3.1
2,611,721	+				-1.7
2,611,722	-				-0.8
2,611,722	-				-0.8
2,611,722	-				+0.6
2,611,725	-				+0.2
2,611,743	+				+1.9
2,611,743	+				-1.0
2,611,744	-				-1.0
2,611,744	-				-1.4
2,611,745	+				-0.4
2,611,745	+				+0.4
2,611,745	+				+0.2
2,611,745	+				+1.6
2,611,745	+				-3.0
2,611,745	+				-1.8
2,611,746	-				-0.1
2,611,746	-				+0.2
2,611,746	-				-0.8
2,611,746	-				+1.2
2,611,746	-				+2.3
2,611,746	-				-0.1
2,611,749	+				-0.9
2,611,749	+				-1.1
2,611,749	+				+1.6
2,611,750	-				-0.8
2,611,750	-				-0.3
2,611,750	-				-0.4
2,611,750	-				-1.0
2,611,765	+				-0.6
2,611,766	-				+1.1
2,611,818	+				-0.4
2,611,819	-				-2.0
2,611,837	+				-0.2
2,611,837	+				+0.7
2,611,838	-				+0.1
2,611,838	-				+1.3
2,611,838	-				-0.4
2,611,838	-				-0.3
2,611,913	+				-1.0
2,611,937	+		HGI48_RS11980	0.19	-0.9
2,611,937	+		HGI48_RS11980	0.19	+0.4
2,611,937	+		HGI48_RS11980	0.19	+0.8
2,611,938	-		HGI48_RS11980	0.19	-0.3
2,611,951	+		HGI48_RS11980	0.20	-0.8
2,611,951	+				+1.1
2,611,951	+		HGI48_RS11980	0.20	-3.6
2,611,951	+		HGI48_RS11980	0.20	-0.1
2,611,951	+		HGI48_RS11980	0.20	+0.6
2,611,951	+		HGI48_RS11980	0.20	+0.1
2,611,951	+		HGI48_RS11980	0.20	-1.0
2,611,951	+		HGI48_RS11980	0.20	-0.0
2,611,952	-		HGI48_RS11980	0.21	+2.6
2,611,952	-		HGI48_RS11980	0.21	+0.4
2,611,952	-				+2.0
2,611,952	-		HGI48_RS11980	0.21	-0.1
2,611,952	-				+0.6
2,611,952	-		HGI48_RS11980	0.21	-1.4
2,611,960	+		HGI48_RS11980	0.21	-0.0
2,611,960	+		HGI48_RS11980	0.21	-1.1
2,611,961	-		HGI48_RS11980	0.21	-0.0
2,611,961	-		HGI48_RS11980	0.21	-2.4
2,612,056	+				+0.6
2,612,112	+		HGI48_RS11980	0.37	-1.0
2,612,115	+		HGI48_RS11980	0.37	-0.4
2,612,180	+		HGI48_RS11980	0.44	-0.1
2,612,180	+		HGI48_RS11980	0.44	+0.6
2,612,185	+		HGI48_RS11980	0.44	-0.3
2,612,204	-		HGI48_RS11980	0.46	-0.0
2,612,204	-		HGI48_RS11980	0.46	-1.8
2,612,219	+		HGI48_RS11980	0.47	-1.4
2,612,219	+		HGI48_RS11980	0.47	-1.1
2,612,275	-				+0.6
2,612,275	-		HGI48_RS11980	0.53	+0.2
2,612,295	+		HGI48_RS11980	0.55	+0.8
2,612,296	-		HGI48_RS11980	0.55	-0.4
2,612,351	-		HGI48_RS11980	0.61	+0.2
2,612,413	+		HGI48_RS11980	0.67	-0.8
2,612,416	+		HGI48_RS11980	0.67	+0.5
2,612,417	-		HGI48_RS11980	0.67	-1.4
2,612,449	+		HGI48_RS11980	0.71	-1.4
2,612,449	+		HGI48_RS11980	0.71	-0.4
2,612,449	+		HGI48_RS11980	0.71	+0.3
2,612,449	+		HGI48_RS11980	0.71	+0.6
2,612,450	-		HGI48_RS11980	0.71	+1.0
2,612,450	-		HGI48_RS11980	0.71	-2.4
2,612,453	+		HGI48_RS11980	0.71	-0.2
2,612,454	-		HGI48_RS11980	0.71	-1.4
2,612,492	+				+3.4
2,612,493	-		HGI48_RS11980	0.75	-1.1
2,612,493	-		HGI48_RS11980	0.75	+1.6
2,612,506	+		HGI48_RS11980	0.76	-1.3
2,612,507	-		HGI48_RS11980	0.76	+0.2
2,612,507	-		HGI48_RS11980	0.76	+0.1
2,612,507	-		HGI48_RS11980	0.76	+0.7
2,612,510	+		HGI48_RS11980	0.77	-0.9
2,612,511	-		HGI48_RS11980	0.77	-0.1
2,612,511	-		HGI48_RS11980	0.77	-0.8
2,612,541	+		HGI48_RS11980	0.80	-0.4
2,612,541	+		HGI48_RS11980	0.80	-0.8
2,612,542	-		HGI48_RS11980	0.80	+0.1
2,612,560	+		HGI48_RS11980	0.82	-0.9
2,612,560	+		HGI48_RS11980	0.82	+1.0
2,612,561	-		HGI48_RS11980	0.82	+0.2
2,612,561	-		HGI48_RS11980	0.82	-1.4
2,612,561	-		HGI48_RS11980	0.82	-0.1
2,612,584	+		HGI48_RS11980	0.84	-0.4
2,612,584	+		HGI48_RS11980	0.84	-0.4
2,612,599	+		HGI48_RS11980	0.86	-0.0
2,612,599	+		HGI48_RS11980	0.86	+1.1
2,612,604	+		HGI48_RS11980	0.86	+0.6
2,612,605	-		HGI48_RS11980	0.86	+2.1
2,612,607	+		HGI48_RS11980	0.87	+0.5
2,612,607	+		HGI48_RS11980	0.87	-1.8
2,612,607	+		HGI48_RS11980	0.87	+0.2
2,612,607	+		HGI48_RS11980	0.87	-0.4
2,612,693	+				-1.0
2,612,740	+				-2.0
2,612,741	-				+0.8
2,612,767	+				-2.4
2,612,767	+				-0.0
2,612,963	-				-0.3
2,612,969	-				-0.2
2,612,977	-				-1.1
2,612,977	-				+0.6
2,612,991	-				+1.4
2,612,991	-				-0.4
2,612,993	-				-1.3
2,613,017	+				+0.2
2,613,017	+				+0.1
2,613,021	-				-1.3
2,613,021	-				-0.2
2,613,021	-				+1.0
2,613,023	-				-0.2
2,613,026	-				-0.8
2,613,026	-				-1.3
2,613,045	-				-0.0
2,613,062	+				-2.4
2,613,062	+				+1.0
2,613,063	-				+0.2
2,613,063	-				+1.0
2,613,063	-				-0.2
2,613,063	-				+1.0
2,613,096	+				-1.2
2,613,097	-				+0.8
2,613,116	+				-0.6
2,613,116	+				-1.9
2,613,116	+				-1.1
2,613,116	+				-0.3
2,613,117	-				+1.1
2,613,117	-				-0.4
2,613,117	-				-2.4
2,613,156	-				-0.4
2,613,167	+				-0.8
2,613,168	-				-2.3
2,613,199	-				+1.6
2,613,233	-				+1.3
2,613,253	+				-0.3
2,613,253	+				-0.0
2,613,254	-				-0.4
2,613,254	-				-0.3
2,613,254	-				-0.9
2,613,254	-				+0.3
2,613,323	+				-0.4
2,613,323	+				-0.4
2,613,323	+				+1.2
2,613,323	+				-0.2
2,613,323	+				+1.4
2,613,323	+				-0.4
2,613,324	-				+0.1
2,613,324	-				+0.2
2,613,330	-				-0.3
2,613,330	-				-1.1
2,613,453	+				+1.3
2,613,454	-				+1.1
2,613,454	-				-0.2
2,613,468	+				+0.3
2,613,468	+				+0.8
2,613,469	-				+0.1
2,613,469	-				-0.8
2,613,472	-				+1.8
2,613,494	+				-1.8
2,613,494	+				+0.9
2,613,495	-				-0.0
2,613,495	-				-0.4
2,613,495	-				+0.4
2,613,495	-				-0.3
2,613,541	+				-0.3
2,613,542	-				+0.7
2,613,542	-				-0.3
2,613,542	-				+0.9
2,613,542	-				-0.4
2,613,543	+				-0.9
2,613,550	+				-2.3
2,613,551	-				-0.7
2,613,551	-				-0.0
2,613,551	-				+0.8