Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11560

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,517,132	+		HGI48_RS11555	0.34	-0.3
2,517,133	-				+0.9
2,517,139	+		HGI48_RS11555	0.35	+0.3
2,517,139	+				+1.5
2,517,139	+		HGI48_RS11555	0.35	-0.7
2,517,140	-		HGI48_RS11555	0.35	-1.5
2,517,140	-		HGI48_RS11555	0.35	-1.6
2,517,140	-		HGI48_RS11555	0.35	-2.8
2,517,140	-		HGI48_RS11555	0.35	-0.2
2,517,140	-		HGI48_RS11555	0.35	+0.7
2,517,143	+		HGI48_RS11555	0.35	+0.1
2,517,285	+		HGI48_RS11555	0.48	-1.6
2,517,286	-		HGI48_RS11555	0.48	-1.1
2,517,286	-		HGI48_RS11555	0.48	-0.2
2,517,287	+		HGI48_RS11555	0.48	-1.1
2,517,288	-				+2.9
2,517,288	-		HGI48_RS11555	0.48	-0.5
2,517,316	-		HGI48_RS11555	0.51	+0.1
2,517,332	+		HGI48_RS11555	0.52	-1.1
2,517,332	+		HGI48_RS11555	0.52	-0.9
2,517,333	-		HGI48_RS11555	0.52	+1.0
2,517,340	-		HGI48_RS11555	0.53	-1.5
2,517,397	-		HGI48_RS11555	0.58	+0.7
2,517,430	-		HGI48_RS11555	0.61	-0.2
2,517,430	-		HGI48_RS11555	0.61	-1.6
2,517,430	-		HGI48_RS11555	0.61	-0.1
2,517,472	+				+2.1
2,517,473	-		HGI48_RS11555	0.65	-0.5
2,517,473	-		HGI48_RS11555	0.65	-0.8
2,517,496	+				-0.1
2,517,496	+		HGI48_RS11555	0.67	-2.1
2,517,496	+				+0.9
2,517,496	+		HGI48_RS11555	0.67	-0.7
2,517,496	+		HGI48_RS11555	0.67	+1.1
2,517,497	-		HGI48_RS11555	0.67	+1.9
2,517,497	-		HGI48_RS11555	0.67	+0.4
2,517,527	+		HGI48_RS11555	0.69	-1.1
2,517,528	-		HGI48_RS11555	0.70	+0.9
2,517,528	-		HGI48_RS11555	0.70	-2.5
2,517,682	+		HGI48_RS11555	0.83	+1.0
2,517,682	+		HGI48_RS11555	0.83	+0.6
2,517,682	+		HGI48_RS11555	0.83	-0.2
2,517,682	+		HGI48_RS11555	0.83	+0.0
2,517,683	-		HGI48_RS11555	0.83	+0.3
2,517,683	-		HGI48_RS11555	0.83	+1.3
2,517,683	-		HGI48_RS11555	0.83	-0.5
2,517,683	-		HGI48_RS11555	0.83	+0.5
2,517,762	+				-0.5
2,517,762	+				+0.3
2,517,762	+				-0.5
2,517,762	+				+1.1
2,517,762	+				+1.5
2,517,855	+				-0.1
2,517,856	-				+1.1
2,517,856	-				-1.1
2,517,873	+				-0.9
2,517,873	+				-0.3
2,517,874	-				+2.8
2,517,874	-				-0.5
2,517,891	+				-1.5
2,517,891	+				-2.8
2,517,909	+				+0.2
2,517,910	-				-0.5
2,518,088	+				-0.2
2,518,088	+				-0.8
2,518,139	+		HGI48_RS11560	0.10	-1.9
2,518,140	-		HGI48_RS11560	0.10	+0.7
2,518,153	+		HGI48_RS11560	0.11	-0.5
2,518,153	+		HGI48_RS11560	0.11	-0.2
2,518,154	-		HGI48_RS11560	0.11	-0.2
2,518,244	+		HGI48_RS11560	0.18	-1.3
2,518,245	-		HGI48_RS11560	0.18	+0.7
2,518,283	+		HGI48_RS11560	0.21	+0.5
2,518,283	+		HGI48_RS11560	0.21	-1.6
2,518,283	+		HGI48_RS11560	0.21	-0.7
2,518,284	-		HGI48_RS11560	0.22	+0.9
2,518,287	-		HGI48_RS11560	0.22	+1.4
2,518,294	+		HGI48_RS11560	0.22	-1.3
2,518,321	+		HGI48_RS11560	0.24	-1.6
2,518,321	+		HGI48_RS11560	0.24	+0.9
2,518,321	+		HGI48_RS11560	0.24	+1.1
2,518,322	-		HGI48_RS11560	0.25	+0.3
2,518,322	-		HGI48_RS11560	0.25	-0.7
2,518,324	+		HGI48_RS11560	0.25	-1.0
2,518,324	+		HGI48_RS11560	0.25	+0.0
2,518,324	+		HGI48_RS11560	0.25	-1.8
2,518,325	-				+2.7
2,518,325	-		HGI48_RS11560	0.25	+0.2
2,518,349	+		HGI48_RS11560	0.27	-1.5
2,518,351	+		HGI48_RS11560	0.27	-1.3
2,518,351	+		HGI48_RS11560	0.27	-0.7
2,518,351	+		HGI48_RS11560	0.27	-1.3
2,518,351	+				-1.1
2,518,351	+		HGI48_RS11560	0.27	+0.5
2,518,351	+		HGI48_RS11560	0.27	-0.6
2,518,351	+		HGI48_RS11560	0.27	-2.1
2,518,450	+		HGI48_RS11560	0.35	-1.8
2,518,450	+		HGI48_RS11560	0.35	+0.7
2,518,498	+		HGI48_RS11560	0.38	-1.6
2,518,498	+		HGI48_RS11560	0.38	-0.5
2,518,499	-		HGI48_RS11560	0.38	+0.5
2,518,499	-				-1.1
2,518,510	+		HGI48_RS11560	0.39	-0.8
2,518,510	+		HGI48_RS11560	0.39	-0.1
2,518,614	+		HGI48_RS11560	0.48	+0.1
2,518,614	+				+2.1
2,518,614	+		HGI48_RS11560	0.48	-1.8
2,518,614	+		HGI48_RS11560	0.48	+0.5
2,518,614	+		HGI48_RS11560	0.48	-1.4
2,518,615	-		HGI48_RS11560	0.48	-0.3
2,518,615	-		HGI48_RS11560	0.48	+0.3
2,518,615	-		HGI48_RS11560	0.48	-0.1
2,518,615	-				-0.1
2,518,615	-		HGI48_RS11560	0.48	-0.8
2,518,703	-		HGI48_RS11560	0.55	+0.1
2,518,703	-		HGI48_RS11560	0.55	-1.8
2,518,703	-		HGI48_RS11560	0.55	-0.6
2,518,703	-		HGI48_RS11560	0.55	+0.5
2,518,973	+		HGI48_RS11560	0.76	-2.5
2,518,973	+		HGI48_RS11560	0.76	-1.1
2,518,973	+		HGI48_RS11560	0.76	-0.5
2,519,039	+				+0.5
2,519,040	-		HGI48_RS11560	0.81	-1.5
2,519,045	+		HGI48_RS11560	0.81	+0.2
2,519,045	+		HGI48_RS11560	0.81	+0.3
2,519,046	-		HGI48_RS11560	0.82	+1.6
2,519,054	+		HGI48_RS11560	0.82	-0.2
2,519,055	-		HGI48_RS11560	0.82	-2.6
2,519,083	-		HGI48_RS11560	0.84	-0.1
2,519,184	+				-0.7
2,519,215	-				+1.5
2,519,215	-				+0.1
2,519,249	-				-0.8
2,519,249	-				+0.2
2,519,269	-				-1.1
2,519,300	+				+0.5
2,519,300	+				-0.4
2,519,312	+				-0.9
2,519,313	-				+1.1
2,519,313	-				-0.5
2,519,316	+				+1.2
2,519,316	+				-2.9
2,519,316	+				-0.1
2,519,316	+				-1.8
2,519,316	+				-0.2
2,519,316	+				+0.9
2,519,317	-				-0.5
2,519,317	-				-1.7
2,519,336	+				-2.2
2,519,444	-				-0.6
2,519,537	+				+0.5
2,519,537	+				-1.5
2,519,537	+				+0.1
2,519,538	-				+0.8
2,519,541	-				+1.1
2,519,654	-		HGI48_RS11565	0.59	-0.1
2,519,738	-				+0.2
2,519,784	+				-1.5
2,519,784	+				-0.1
2,519,784	+				+1.3
2,519,849	-				+1.0
2,519,925	+				+0.5
2,519,925	+				+0.9
2,519,926	-				+0.4
2,519,944	+				-1.1
2,519,944	+				-0.2
2,519,945	-				-1.1
2,519,945	-				-1.2
2,519,959	+				+0.5
2,519,959	+				-0.1
2,519,960	-				-0.1
2,520,039	+		HGI48_RS11570	0.11	-0.5
2,520,039	+		HGI48_RS11570	0.11	-1.3
2,520,039	+				+0.9
2,520,039	+		HGI48_RS11570	0.11	+1.0
2,520,039	+		HGI48_RS11570	0.11	-1.5
2,520,039	+		HGI48_RS11570	0.11	-1.1
2,520,039	+		HGI48_RS11570	0.11	-0.9
2,520,039	+				-0.1
2,520,039	+		HGI48_RS11570	0.11	-0.5
2,520,040	-		HGI48_RS11570	0.11	-0.3
2,520,040	-				+1.8
2,520,040	-		HGI48_RS11570	0.11	-0.5
2,520,040	-		HGI48_RS11570	0.11	-1.6
2,520,040	-		HGI48_RS11570	0.11	-1.5
2,520,040	-		HGI48_RS11570	0.11	+0.3