Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11395

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,480,479	+				-2.9
2,480,479	+				-0.7
2,480,479	+				+1.6
2,480,483	+				+1.0
2,480,484	-				+1.1
2,480,528	+				-0.4
2,480,529	-				+1.0
2,480,609	+				+1.9
2,480,610	-				-0.4
2,480,616	+		HGI48_RS11390	0.11	+0.3
2,480,750	+		HGI48_RS11390	0.25	-0.1
2,480,793	+		HGI48_RS11390	0.30	+1.1
2,480,793	+		HGI48_RS11390	0.30	+0.9
2,480,794	-		HGI48_RS11390	0.30	-0.2
2,480,794	-		HGI48_RS11390	0.30	-1.2
2,480,794	-		HGI48_RS11390	0.30	-1.8
2,480,805	-		HGI48_RS11390	0.32	+0.3
2,480,805	-		HGI48_RS11390	0.32	+1.0
2,480,814	+		HGI48_RS11390	0.33	-0.8
2,480,814	+				+1.0
2,480,814	+		HGI48_RS11390	0.33	-0.4
2,480,815	-		HGI48_RS11390	0.33	+0.6
2,480,815	-		HGI48_RS11390	0.33	-0.2
2,480,815	-		HGI48_RS11390	0.33	-2.9
2,480,815	-				+0.6
2,480,815	-		HGI48_RS11390	0.33	-2.4
2,480,815	-		HGI48_RS11390	0.33	-2.2
2,480,865	+		HGI48_RS11390	0.38	-0.4
2,480,965	-		HGI48_RS11390	0.49	-0.0
2,480,965	-		HGI48_RS11390	0.49	+0.3
2,481,001	-		HGI48_RS11390	0.53	-0.9
2,481,012	+		HGI48_RS11390	0.54	+0.4
2,481,012	+		HGI48_RS11390	0.54	-0.2
2,481,012	+		HGI48_RS11390	0.54	+0.1
2,481,012	+		HGI48_RS11390	0.54	-0.2
2,481,013	-		HGI48_RS11390	0.55	+0.9
2,481,013	-				+0.6
2,481,141	+		HGI48_RS11390	0.69	+0.6
2,481,142	-		HGI48_RS11390	0.69	-0.6
2,481,234	+		HGI48_RS11390	0.79	+0.6
2,481,235	-		HGI48_RS11390	0.79	-0.3
2,481,235	-		HGI48_RS11390	0.79	+0.3
2,481,240	+		HGI48_RS11390	0.80	-0.7
2,481,255	+		HGI48_RS11390	0.81	+0.3
2,481,381	+				-1.6
2,481,382	-				-1.0
2,481,414	-				+1.7
2,481,421	-				-1.0
2,481,432	+				-0.7
2,481,432	+				-0.8
2,481,432	+				+1.0
2,481,432	+				-0.6
2,481,433	-				-2.4
2,481,433	-				-2.6
2,481,433	-				+0.1
2,481,473	-				-0.8
2,481,531	+				+1.6
2,481,531	+				-2.3
2,481,688	+		HGI48_RS11395	0.22	-0.9
2,481,688	+		HGI48_RS11395	0.22	+0.2
2,481,688	+				+0.6
2,481,689	-		HGI48_RS11395	0.22	-2.3
2,481,689	-		HGI48_RS11395	0.22	+0.1
2,481,689	-		HGI48_RS11395	0.22	-0.4
2,481,689	-		HGI48_RS11395	0.22	+0.6
2,481,979	-		HGI48_RS11395	0.48	-1.0
2,481,979	-		HGI48_RS11395	0.48	-0.4
2,482,018	+		HGI48_RS11395	0.52	+1.7
2,482,019	-		HGI48_RS11395	0.52	+0.4
2,482,062	+		HGI48_RS11395	0.55	+0.3
2,482,062	+		HGI48_RS11395	0.55	-0.1
2,482,062	+		HGI48_RS11395	0.55	-1.0
2,482,101	+				-1.0
2,482,117	+		HGI48_RS11395	0.60	+1.1
2,482,118	-		HGI48_RS11395	0.60	+0.1
2,482,118	-		HGI48_RS11395	0.60	+1.2
2,482,231	+				-1.0
2,482,231	+		HGI48_RS11395	0.70	+1.1
2,482,231	+		HGI48_RS11395	0.70	-0.4
2,482,232	-				+2.1
2,482,232	-		HGI48_RS11395	0.71	-1.3
2,482,276	+		HGI48_RS11395	0.74	+0.6
2,482,276	+		HGI48_RS11395	0.74	+1.1
2,482,277	-		HGI48_RS11395	0.75	+0.1
2,482,315	+		HGI48_RS11395	0.78	+1.6
2,482,401	+		HGI48_RS11395	0.86	-0.0
2,482,401	+				-1.0
2,482,401	+		HGI48_RS11395	0.86	+1.0
2,482,401	+				-0.4
2,482,402	-		HGI48_RS11395	0.86	+0.0
2,482,405	+		HGI48_RS11395	0.86	+0.4
2,482,405	+		HGI48_RS11395	0.86	+1.0
2,482,405	+		HGI48_RS11395	0.86	-1.3
2,482,406	-		HGI48_RS11395	0.86	-1.2
2,482,406	-		HGI48_RS11395	0.86	-0.4
2,482,406	-		HGI48_RS11395	0.86	+0.1
2,482,406	-		HGI48_RS11395	0.86	-0.2
2,482,406	-		HGI48_RS11395	0.86	-0.1
2,482,406	-				+0.6
2,482,430	+		HGI48_RS11395	0.88	-2.3
2,482,440	+		HGI48_RS11395	0.89	-0.3
2,482,441	-		HGI48_RS11395	0.89	-1.4
2,482,495	+				+0.0
2,482,496	-				-1.4
2,482,496	-				-0.6
2,482,515	+				+0.4
2,482,515	+				+0.2
2,482,515	+				-2.3
2,482,515	+				-0.2
2,482,516	-				-2.0
2,482,516	-				-0.8
2,482,524	+				+3.0
2,482,552	-				+0.0
2,482,561	+				+0.1
2,482,570	+				-0.0
2,482,571	-				-0.4
2,482,571	-				-0.8
2,482,594	+				-2.6
2,482,595	-				-0.3
2,482,595	-				-1.8
2,482,715	+		HGI48_RS11400	0.11	+0.6
2,482,764	+		HGI48_RS11400	0.14	+0.8
2,482,764	+		HGI48_RS11400	0.14	-0.1
2,482,799	+		HGI48_RS11400	0.17	-2.9
2,482,800	-		HGI48_RS11400	0.17	-1.0
2,482,887	+		HGI48_RS11400	0.24	+0.2
2,482,888	-		HGI48_RS11400	0.24	-0.6
2,482,960	+		HGI48_RS11400	0.30	+0.1
2,482,960	+		HGI48_RS11400	0.30	-0.8
2,483,010	+		HGI48_RS11400	0.33	-0.2
2,483,011	-		HGI48_RS11400	0.33	-0.0
2,483,011	-		HGI48_RS11400	0.33	-0.2
2,483,014	-		HGI48_RS11400	0.34	-0.2
2,483,014	-		HGI48_RS11400	0.34	+0.1
2,483,014	-		HGI48_RS11400	0.34	-0.2
2,483,014	-		HGI48_RS11400	0.34	-2.4
2,483,014	-		HGI48_RS11400	0.34	-2.9
2,483,014	-		HGI48_RS11400	0.34	-1.4
2,483,014	-		HGI48_RS11400	0.34	+0.6
2,483,166	+		HGI48_RS11400	0.45	+2.3
2,483,166	+		HGI48_RS11400	0.45	+0.4
2,483,167	-		HGI48_RS11400	0.46	-0.2
2,483,167	-		HGI48_RS11400	0.46	+1.1
2,483,182	-		HGI48_RS11400	0.47	-0.9
2,483,182	-				+1.0
2,483,211	-		HGI48_RS11400	0.49	-1.0
2,483,224	-		HGI48_RS11400	0.50	+1.0
2,483,259	+		HGI48_RS11400	0.53	+0.1
2,483,301	+		HGI48_RS11400	0.56	-1.4
2,483,302	-		HGI48_RS11400	0.56	-0.1
2,483,304	+		HGI48_RS11400	0.56	+0.5
2,483,331	+		HGI48_RS11400	0.58	-1.7
2,483,332	-		HGI48_RS11400	0.58	-0.4
2,483,332	-		HGI48_RS11400	0.58	+1.3
2,483,373	+		HGI48_RS11400	0.61	-0.0
2,483,373	+		HGI48_RS11400	0.61	+0.2
2,483,373	+		HGI48_RS11400	0.61	-1.4
2,483,373	+		HGI48_RS11400	0.61	-0.4
2,483,373	+		HGI48_RS11400	0.61	-0.7
2,483,373	+		HGI48_RS11400	0.61	-1.3
2,483,373	+		HGI48_RS11400	0.61	-2.3
2,483,374	-		HGI48_RS11400	0.62	-1.0
2,483,401	-		HGI48_RS11400	0.64	-1.8
2,483,556	+		HGI48_RS11400	0.76	+0.4
2,483,557	-		HGI48_RS11400	0.76	-0.0
2,483,557	-		HGI48_RS11400	0.76	-1.3
2,483,557	-		HGI48_RS11400	0.76	-1.4
2,483,557	-		HGI48_RS11400	0.76	-2.4
2,483,557	-		HGI48_RS11400	0.76	-0.3