Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11385

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,478,642	+		HGI48_RS11380	0.42	+0.1
2,478,642	+		HGI48_RS11380	0.42	-1.4
2,478,680	-		HGI48_RS11380	0.44	-2.2
2,478,717	+		HGI48_RS11380	0.46	+0.3
2,478,717	+		HGI48_RS11380	0.46	-0.2
2,478,718	-		HGI48_RS11380	0.46	-1.0
2,478,731	+		HGI48_RS11380	0.47	-1.8
2,478,747	-		HGI48_RS11380	0.48	+1.2
2,478,757	-		HGI48_RS11380	0.49	-1.0
2,478,776	-		HGI48_RS11380	0.50	+0.3
2,478,942	-		HGI48_RS11380	0.60	+0.3
2,479,002	+		HGI48_RS11380	0.64	-1.4
2,479,005	+		HGI48_RS11380	0.64	+0.8
2,479,006	-		HGI48_RS11380	0.64	-0.0
2,479,006	-				+0.6
2,479,017	+		HGI48_RS11380	0.65	-0.7
2,479,120	+		HGI48_RS11380	0.71	+0.6
2,479,120	+		HGI48_RS11380	0.71	-1.0
2,479,121	-		HGI48_RS11380	0.71	+0.6
2,479,200	+		HGI48_RS11380	0.76	-0.1
2,479,200	+		HGI48_RS11380	0.76	+1.0
2,479,201	-		HGI48_RS11380	0.76	+0.7
2,479,201	-		HGI48_RS11380	0.76	-1.4
2,479,202	+		HGI48_RS11380	0.76	+0.4
2,479,203	-		HGI48_RS11380	0.76	+0.1
2,479,210	+				+1.9
2,479,210	+				-1.0
2,479,211	-		HGI48_RS11380	0.77	-2.8
2,479,211	-		HGI48_RS11380	0.77	-1.2
2,479,327	-		HGI48_RS11380	0.84	+0.6
2,479,356	-		HGI48_RS11380	0.85	-0.0
2,479,405	-				-1.0
2,479,408	+				+0.6
2,479,466	+				+0.1
2,479,529	+				+0.9
2,479,552	-				-1.0
2,479,625	+				+0.6
2,479,630	-				-2.4
2,479,636	+				+0.1
2,479,667	+				-0.1
2,479,667	+				-0.0
2,479,668	-				+0.4
2,479,668	-				-1.4
2,479,668	-				-0.1
2,479,669	+				-1.8
2,479,681	+				-0.3
2,479,681	+				-3.0
2,479,683	+				-0.0
2,479,718	-				-0.1
2,479,756	-				+1.6
2,479,756	-				-0.4
2,479,850	+		HGI48_RS11385	0.24	-1.9
2,479,850	+		HGI48_RS11385	0.24	-0.1
2,479,851	-				-1.0
2,479,851	-		HGI48_RS11385	0.24	-0.7
2,479,854	+		HGI48_RS11385	0.24	+0.0
2,479,854	+		HGI48_RS11385	0.24	+0.1
2,479,854	+		HGI48_RS11385	0.24	-2.0
2,479,855	-		HGI48_RS11385	0.24	-0.0
2,479,855	-		HGI48_RS11385	0.24	-0.4
2,479,855	-		HGI48_RS11385	0.24	+0.2
2,479,855	-				-1.0
2,479,949	+		HGI48_RS11385	0.35	-1.8
2,479,949	+		HGI48_RS11385	0.35	-1.8
2,479,949	+				-1.0
2,479,952	+				+1.6
2,479,952	+		HGI48_RS11385	0.35	+1.3
2,479,952	+		HGI48_RS11385	0.35	+1.5
2,479,952	+		HGI48_RS11385	0.35	-0.0
2,479,953	-				+0.6
2,479,953	-		HGI48_RS11385	0.35	+0.4
2,479,975	+		HGI48_RS11385	0.38	-1.8
2,479,976	-		HGI48_RS11385	0.38	-0.1
2,479,976	-				+1.6
2,479,976	-		HGI48_RS11385	0.38	+0.4
2,479,981	-		HGI48_RS11385	0.39	-0.4
2,479,981	-		HGI48_RS11385	0.39	+0.3
2,479,981	-				-0.0
2,479,981	-		HGI48_RS11385	0.39	-0.8
2,479,981	-		HGI48_RS11385	0.39	-2.0
2,480,032	+		HGI48_RS11385	0.44	+0.6
2,480,033	-		HGI48_RS11385	0.44	+1.0
2,480,184	-				+1.0
2,480,288	-		HGI48_RS11385	0.73	-2.4
2,480,319	-		HGI48_RS11385	0.77	+1.1
2,480,349	-		HGI48_RS11385	0.80	-2.6
2,480,354	+				+2.7
2,480,354	+		HGI48_RS11385	0.80	-1.4
2,480,354	+		HGI48_RS11385	0.80	-0.5
2,480,369	+		HGI48_RS11385	0.82	+0.8
2,480,369	+		HGI48_RS11385	0.82	+1.0
2,480,370	-		HGI48_RS11385	0.82	-0.4
2,480,370	-		HGI48_RS11385	0.82	-2.4
2,480,371	+		HGI48_RS11385	0.82	+0.3
2,480,372	-		HGI48_RS11385	0.82	-2.9
2,480,372	-		HGI48_RS11385	0.82	-0.8
2,480,372	-		HGI48_RS11385	0.82	-1.4
2,480,372	-		HGI48_RS11385	0.82	+0.6
2,480,375	+		HGI48_RS11385	0.83	+0.8
2,480,375	+		HGI48_RS11385	0.83	-0.4
2,480,376	-		HGI48_RS11385	0.83	+0.7
2,480,376	-		HGI48_RS11385	0.83	+1.7
2,480,376	-		HGI48_RS11385	0.83	+0.8
2,480,376	-		HGI48_RS11385	0.83	+0.4
2,480,376	-		HGI48_RS11385	0.83	-0.4
2,480,376	-		HGI48_RS11385	0.83	+0.2
2,480,393	+		HGI48_RS11385	0.85	-1.4
2,480,479	+				-2.9
2,480,479	+				-0.7
2,480,479	+				+1.6
2,480,483	+				+1.0
2,480,484	-				+1.1
2,480,528	+				-0.4
2,480,529	-				+1.0
2,480,609	+				+1.9
2,480,610	-				-0.4
2,480,616	+		HGI48_RS11390	0.11	+0.3
2,480,750	+		HGI48_RS11390	0.25	-0.1
2,480,793	+		HGI48_RS11390	0.30	+1.1
2,480,793	+		HGI48_RS11390	0.30	+0.9
2,480,794	-		HGI48_RS11390	0.30	-0.2
2,480,794	-		HGI48_RS11390	0.30	-1.2
2,480,794	-		HGI48_RS11390	0.30	-1.8
2,480,805	-		HGI48_RS11390	0.32	+0.3
2,480,805	-		HGI48_RS11390	0.32	+1.0
2,480,814	+		HGI48_RS11390	0.33	-0.8
2,480,814	+				+1.0
2,480,814	+		HGI48_RS11390	0.33	-0.4
2,480,815	-		HGI48_RS11390	0.33	+0.6
2,480,815	-		HGI48_RS11390	0.33	-0.2
2,480,815	-		HGI48_RS11390	0.33	-2.9
2,480,815	-				+0.6
2,480,815	-		HGI48_RS11390	0.33	-2.4
2,480,815	-		HGI48_RS11390	0.33	-2.2
2,480,865	+		HGI48_RS11390	0.38	-0.4
2,480,965	-		HGI48_RS11390	0.49	-0.0
2,480,965	-		HGI48_RS11390	0.49	+0.3
2,481,001	-		HGI48_RS11390	0.53	-0.9
2,481,012	+		HGI48_RS11390	0.54	+0.4
2,481,012	+		HGI48_RS11390	0.54	-0.2
2,481,012	+		HGI48_RS11390	0.54	+0.1
2,481,012	+		HGI48_RS11390	0.54	-0.2
2,481,013	-		HGI48_RS11390	0.55	+0.9
2,481,013	-				+0.6
2,481,141	+		HGI48_RS11390	0.69	+0.6
2,481,142	-		HGI48_RS11390	0.69	-0.6
2,481,234	+		HGI48_RS11390	0.79	+0.6
2,481,235	-		HGI48_RS11390	0.79	-0.3
2,481,235	-		HGI48_RS11390	0.79	+0.3
2,481,240	+		HGI48_RS11390	0.80	-0.7
2,481,255	+		HGI48_RS11390	0.81	+0.3
2,481,381	+				-1.6
2,481,382	-				-1.0
2,481,414	-				+1.7
2,481,421	-				-1.0
2,481,432	+				-0.7
2,481,432	+				-0.8
2,481,432	+				+1.0
2,481,432	+				-0.6
2,481,433	-				-2.4
2,481,433	-				-2.6
2,481,433	-				+0.1
2,481,473	-				-0.8