Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07785

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,665,377	+		HGI48_RS07780	0.65	+2.9
1,665,378	-				+1.0
1,665,835	+				+1.3
1,665,835	+				+1.1
1,665,859	+				+0.2
1,665,859	+				+0.6
1,665,859	+				-0.2
1,665,859	+				-0.0
1,665,860	-				+0.1
1,665,860	-				+1.9
1,665,863	+				-0.2
1,665,863	+				+0.6
1,665,863	+				+1.7
1,665,863	+				-1.7
1,665,863	+				+1.6
1,665,863	+				-0.5
1,665,864	-				+1.4
1,665,864	-				-2.6
1,665,864	-				+0.6
1,665,864	-				-0.1
1,665,864	-				-0.9
1,665,897	-				-1.7
1,665,914	+				-0.3
1,665,960	-				+0.0
1,665,960	-				-0.4
1,665,960	-				-0.6
1,665,960	-				+0.5
1,665,969	+				-0.4
1,665,970	-				-2.2
1,666,016	+				+0.6
1,666,016	+				-0.0
1,666,016	+				+1.2
1,666,016	+				+0.2
1,666,016	+				-2.4
1,666,016	+				-2.2
1,666,016	+				+0.5
1,666,017	-				-2.6
1,666,017	-				+1.7
1,666,017	-				+0.6
1,666,017	-				+1.4
1,666,017	-				-0.4
1,666,017	-				-0.3
1,666,024	+				+0.2
1,666,024	+				-0.4
1,666,024	+				-0.7
1,666,024	+				-0.2
1,666,024	+				-0.2
1,666,025	-				+1.2
1,666,025	-				-0.5
1,666,072	+				+0.7
1,666,073	-				-0.8
1,666,073	-				+0.6
1,666,073	-				-1.4
1,666,081	+				-0.0
1,666,082	-				-0.4
1,666,083	+				-1.0
1,666,084	-				-0.7
1,666,084	-				+0.3
1,666,084	-				+1.6
1,666,084	-				+2.2
1,666,084	-				-1.4
1,666,084	-				-0.3
1,666,182	-				-1.0
1,666,182	-				-0.2
1,666,182	-				-1.0
1,666,182	-				-2.4
1,666,202	-				+0.7
1,666,202	-				-2.0
1,666,210	-				+0.1
1,666,246	+				-1.7
1,666,247	-				+0.7
1,666,247	-				+0.8
1,666,247	-				-0.6
1,666,249	+				+1.0
1,666,276	+				-1.4
1,666,277	-				-2.6
1,666,277	-				-2.4
1,666,277	-				-0.9
1,666,277	-				-0.8
1,666,425	+		HGI48_RS07785	0.16	+1.2
1,666,426	-		HGI48_RS07785	0.17	+0.3
1,666,426	-		HGI48_RS07785	0.17	-0.7
1,666,426	-		HGI48_RS07785	0.17	+0.3
1,666,426	-		HGI48_RS07785	0.17	+1.1
1,666,434	+		HGI48_RS07785	0.17	+0.6
1,666,434	+		HGI48_RS07785	0.17	-2.0
1,666,434	+		HGI48_RS07785	0.17	-2.2
1,666,434	+		HGI48_RS07785	0.17	+0.1
1,666,435	-		HGI48_RS07785	0.18	-0.8
1,666,450	+		HGI48_RS07785	0.19	-1.2
1,666,450	+		HGI48_RS07785	0.19	-0.0
1,666,556	-		HGI48_RS07785	0.30	+0.8
1,666,630	+		HGI48_RS07785	0.38	-0.7
1,666,630	+		HGI48_RS07785	0.38	+0.4
1,666,631	-		HGI48_RS07785	0.38	-1.4
1,666,631	-				-0.0
1,666,631	-		HGI48_RS07785	0.38	+0.5
1,666,926	+		HGI48_RS07785	0.69	+1.0
1,666,926	+		HGI48_RS07785	0.69	-0.3
1,666,926	+		HGI48_RS07785	0.69	+0.2
1,666,927	-		HGI48_RS07785	0.69	+0.1
1,667,086	+		HGI48_RS07785	0.86	-0.2
1,667,086	+		HGI48_RS07785	0.86	-2.4
1,667,087	-		HGI48_RS07785	0.86	-0.3
1,667,087	-		HGI48_RS07785	0.86	-1.2
1,667,087	-		HGI48_RS07785	0.86	-1.2
1,667,087	-		HGI48_RS07785	0.86	+0.6
1,667,107	+		HGI48_RS07785	0.88	-0.2
1,667,107	+		HGI48_RS07785	0.88	-1.0
1,667,107	+		HGI48_RS07785	0.88	-0.5
1,667,107	+		HGI48_RS07785	0.88	+0.2
1,667,107	+		HGI48_RS07785	0.88	+0.2
1,667,107	+		HGI48_RS07785	0.88	-0.7
1,667,108	-		HGI48_RS07785	0.88	-0.3
1,667,108	-		HGI48_RS07785	0.88	-0.8
1,667,108	-		HGI48_RS07785	0.88	+0.4
1,667,108	-		HGI48_RS07785	0.88	-3.1
1,667,108	-		HGI48_RS07785	0.88	-0.3
1,667,108	-		HGI48_RS07785	0.88	-0.5
1,667,108	-		HGI48_RS07785	0.88	-0.3
1,667,108	-		HGI48_RS07785	0.88	+0.4
1,667,108	-		HGI48_RS07785	0.88	+0.6
1,667,111	+		HGI48_RS07785	0.88	+0.6
1,667,111	+		HGI48_RS07785	0.88	-0.3
1,667,111	+				-1.0
1,667,111	+		HGI48_RS07785	0.88	+0.6
1,667,111	+		HGI48_RS07785	0.88	-2.0
1,667,111	+		HGI48_RS07785	0.88	-1.3
1,667,112	-		HGI48_RS07785	0.88	-2.7
1,667,112	-		HGI48_RS07785	0.88	-1.6
1,667,112	-		HGI48_RS07785	0.88	-0.3
1,667,112	-		HGI48_RS07785	0.88	-0.2
1,667,116	+		HGI48_RS07785	0.89	-0.7
1,667,163	+				+0.2
1,667,163	+				+0.2
1,667,163	+				+0.9
1,667,163	+				-0.6
1,667,163	+				+0.3
1,667,163	+				-0.2
1,667,163	+				+0.5
1,667,164	-				-1.7
1,667,164	-				-1.4
1,667,164	-				+0.3
1,667,164	-				-2.9
1,667,164	-				-0.4
1,667,164	-				-1.4
1,667,164	-				+0.8
1,667,238	+				+0.4
1,667,238	+				-1.6
1,667,239	-				-0.4
1,667,239	-				-1.2
1,667,352	+		HGI48_RS07790	0.14	+1.2
1,667,353	-		HGI48_RS07790	0.14	+0.6
1,667,353	-		HGI48_RS07790	0.14	+1.0
1,667,353	-		HGI48_RS07790	0.14	-1.0
1,667,450	-		HGI48_RS07790	0.24	-1.9
1,667,458	+		HGI48_RS07790	0.25	-0.8
1,667,458	+		HGI48_RS07790	0.25	-0.2
1,667,458	+		HGI48_RS07790	0.25	-0.2
1,667,458	+		HGI48_RS07790	0.25	-1.7
1,667,459	-		HGI48_RS07790	0.25	+0.8
1,667,459	-		HGI48_RS07790	0.25	-1.2
1,667,459	-		HGI48_RS07790	0.25	-0.2
1,667,584	-		HGI48_RS07790	0.38	-1.4
1,667,727	+		HGI48_RS07790	0.53	+0.4
1,667,727	+		HGI48_RS07790	0.53	+0.4
1,667,727	+		HGI48_RS07790	0.53	-0.9
1,667,727	+		HGI48_RS07790	0.53	-1.4
1,667,728	-		HGI48_RS07790	0.53	+1.4
1,667,728	-		HGI48_RS07790	0.53	-0.3
1,667,728	-		HGI48_RS07790	0.53	+0.8
1,667,731	+		HGI48_RS07790	0.53	-2.6
1,667,731	+		HGI48_RS07790	0.53	-0.7
1,667,731	+		HGI48_RS07790	0.53	-0.7
1,667,732	-		HGI48_RS07790	0.53	-1.4
1,667,732	-		HGI48_RS07790	0.53	-1.4
1,667,732	-		HGI48_RS07790	0.53	-1.0
1,667,732	-		HGI48_RS07790	0.53	+0.8
1,667,732	-		HGI48_RS07790	0.53	+1.1
1,667,732	-		HGI48_RS07790	0.53	+0.1
1,667,732	-		HGI48_RS07790	0.53	-2.6
1,667,732	-		HGI48_RS07790	0.53	-1.4
1,668,042	+		HGI48_RS07790	0.85	+0.3
1,668,042	+		HGI48_RS07790	0.85	+1.4
1,668,043	-		HGI48_RS07790	0.85	+0.2
1,668,068	+		HGI48_RS07790	0.88	+0.8
1,668,184	+				+0.3
1,668,184	+				+1.7
1,668,185	-				-0.3
1,668,192	-				+1.0
1,668,199	+				+0.7
1,668,200	-				+0.8