Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07135

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
1,513,227	-		HGI48_RS07125	0.80	+0.4
1,513,227	-		HGI48_RS07125	0.80	-0.4
1,513,227	-		HGI48_RS07125	0.80	+0.8
1,513,248	+		HGI48_RS07125	0.81	+0.0
1,513,248	+		HGI48_RS07125	0.81	-1.4
1,513,248	+		HGI48_RS07125	0.81	-0.4
1,513,250	+		HGI48_RS07125	0.81	-0.3
1,513,250	+		HGI48_RS07125	0.81	-0.6
1,513,250	+		HGI48_RS07125	0.81	+0.1
1,513,250	+		HGI48_RS07125	0.81	-0.4
1,513,250	+		HGI48_RS07125	0.81	-1.7
1,513,250	+		HGI48_RS07125	0.81	+0.9
1,513,251	-		HGI48_RS07125	0.81	+1.3
1,513,251	-				+3.3
1,513,251	-		HGI48_RS07125	0.81	+0.3
1,513,251	-		HGI48_RS07125	0.81	+0.4
1,513,251	-				-0.4
1,513,251	-		HGI48_RS07125	0.81	+0.6
1,513,251	-		HGI48_RS07125	0.81	-1.0
1,513,275	-		HGI48_RS07125	0.82	-0.7
1,513,421	+		HGI48_RS07125	0.87	-0.2
1,513,430	+				+2.2
1,513,430	+		HGI48_RS07125	0.88	-0.2
1,513,430	+		HGI48_RS07125	0.88	-0.1
1,513,430	+		HGI48_RS07125	0.88	-0.0
1,513,430	+		HGI48_RS07125	0.88	-1.0
1,513,430	+		HGI48_RS07125	0.88	+0.4
1,513,430	+		HGI48_RS07125	0.88	-2.0
1,513,430	+		HGI48_RS07125	0.88	-0.7
1,513,430	+		HGI48_RS07125	0.88	-0.2
1,513,430	+		HGI48_RS07125	0.88	+1.1
1,513,431	-		HGI48_RS07125	0.88	-0.4
1,513,431	-		HGI48_RS07125	0.88	-0.2
1,513,431	-		HGI48_RS07125	0.88	+0.4
1,513,431	-		HGI48_RS07125	0.88	+2.5
1,513,431	-		HGI48_RS07125	0.88	-1.0
1,513,431	-		HGI48_RS07125	0.88	-1.3
1,513,431	-		HGI48_RS07125	0.88	+0.1
1,513,431	-		HGI48_RS07125	0.88	+0.6
1,513,431	-		HGI48_RS07125	0.88	-0.7
1,513,431	-				+1.3
1,513,431	-		HGI48_RS07125	0.88	+0.2
1,513,431	-		HGI48_RS07125	0.88	-2.0
1,513,485	+		HGI48_RS07125	0.90	-1.4
1,513,542	+				+0.6
1,513,655	+				-0.4
1,513,655	+				+0.3
1,513,656	-				-0.1
1,513,656	-				-0.2
1,513,658	+				+0.1
1,513,783	-				-2.0
1,513,867	+		HGI48_RS07130	0.30	-0.7
1,513,867	+		HGI48_RS07130	0.30	-1.2
1,513,868	-		HGI48_RS07130	0.31	+0.5
1,513,887	+				+1.3
1,513,888	-		HGI48_RS07130	0.38	-1.7
1,513,951	+		HGI48_RS07130	0.60	+0.9
1,513,951	+		HGI48_RS07130	0.60	-1.0
1,513,951	+		HGI48_RS07130	0.60	-3.1
1,513,951	+		HGI48_RS07130	0.60	-1.4
1,513,951	+		HGI48_RS07130	0.60	+0.3
1,513,952	-		HGI48_RS07130	0.61	-0.2
1,513,952	-		HGI48_RS07130	0.61	-1.7
1,513,952	-		HGI48_RS07130	0.61	-0.1
1,513,955	-		HGI48_RS07130	0.62	-1.0
1,513,964	-		HGI48_RS07130	0.65	-2.6
1,513,975	+				+0.6
1,514,012	+		HGI48_RS07130	0.82	-1.2
1,514,019	-				+0.6
1,514,019	-		HGI48_RS07130	0.84	-1.7
1,514,041	-				+1.0
1,514,044	+				-0.3
1,514,045	-				-0.5
1,514,073	+				-2.0
1,514,073	+				-0.7
1,514,077	+				+1.0
1,514,077	+				+1.8
1,514,078	-				-0.7
1,514,168	-		HGI48_RS07135	0.16	-1.4
1,514,190	+		HGI48_RS07135	0.20	+0.1
1,514,190	+		HGI48_RS07135	0.20	-0.7
1,514,191	-		HGI48_RS07135	0.20	-0.8
1,514,191	-		HGI48_RS07135	0.20	-0.7
1,514,239	-		HGI48_RS07135	0.27	-0.8
1,514,268	+		HGI48_RS07135	0.31	+0.2
1,514,268	+		HGI48_RS07135	0.31	-0.7
1,514,268	+		HGI48_RS07135	0.31	-0.4
1,514,269	-		HGI48_RS07135	0.32	-0.9
1,514,270	+		HGI48_RS07135	0.32	-0.4
1,514,270	+		HGI48_RS07135	0.32	-1.0
1,514,270	+				+1.0
1,514,270	+		HGI48_RS07135	0.32	-1.4
1,514,270	+				+1.6
1,514,270	+		HGI48_RS07135	0.32	+0.0
1,514,271	-				+1.3
1,514,271	-		HGI48_RS07135	0.32	-1.7
1,514,271	-		HGI48_RS07135	0.32	-1.7
1,514,271	-		HGI48_RS07135	0.32	+0.8
1,514,327	+				-1.0
1,514,328	-		HGI48_RS07135	0.40	-0.7
1,514,328	-		HGI48_RS07135	0.40	-2.0
1,514,330	+				+1.0
1,514,330	+		HGI48_RS07135	0.41	-0.6
1,514,350	+		HGI48_RS07135	0.44	-1.4
1,514,369	+		HGI48_RS07135	0.47	+1.0
1,514,379	+		HGI48_RS07135	0.48	-0.5
1,514,419	+		HGI48_RS07135	0.54	+0.8
1,514,420	-		HGI48_RS07135	0.54	+0.9
1,514,445	-		HGI48_RS07135	0.58	-0.8
1,514,562	+		HGI48_RS07135	0.76	-0.6
1,514,563	-		HGI48_RS07135	0.76	-1.6
1,514,563	-		HGI48_RS07135	0.76	+0.4
1,514,618	+		HGI48_RS07135	0.84	-0.4
1,514,647	+		HGI48_RS07135	0.88	+0.9
1,514,648	-		HGI48_RS07135	0.88	-0.3
1,514,648	-		HGI48_RS07135	0.88	+1.0
1,514,648	-		HGI48_RS07135	0.88	-0.4
1,514,648	-		HGI48_RS07135	0.88	-1.6
1,514,751	+				-1.3
1,514,795	+				+0.3
1,515,004	+				-1.4
1,515,005	-				+0.2
1,515,011	+				-0.6
1,515,011	+				-0.4
1,515,011	+				-0.6
1,515,011	+				+0.1
1,515,011	+				+0.9
1,515,011	+				-2.0
1,515,011	+				-0.2
1,515,011	+				-0.2
1,515,012	-				-2.2
1,515,015	+				-0.9
1,515,016	-				+1.0
1,515,016	-				+0.9
1,515,030	+				-0.7
1,515,030	+				+0.1
1,515,031	-				-0.1
1,515,031	-				+0.7
1,515,061	-				+0.0
1,515,064	+				+0.8
1,515,065	-				+0.6
1,515,177	+				+1.0
1,515,177	+				+0.1
1,515,177	+				-0.5
1,515,194	+				-1.8
1,515,195	-				+0.9
1,515,307	+				-0.1
1,515,312	-				+0.9
1,515,350	+				+0.4
1,515,350	+				-0.6
1,515,371	+				+0.9
1,515,371	+				-1.7
1,515,371	+				+0.5
1,515,372	-				-2.4
1,515,372	-				-0.8
1,515,372	-				+0.5
1,515,443	+				-0.8
1,515,474	-				+0.6
1,515,476	+				-0.8
1,515,476	+				+0.7
1,515,477	-				+0.6
1,515,480	+				-0.4
1,515,480	+				+0.0
1,515,481	-				+1.2