Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06790

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06785 and HGI48_RS06790 are separated by 356 nucleotidesHGI48_RS06790 and HGI48_RS06795 are separated by 79 nucleotides HGI48_RS06785: HGI48_RS06785 - glycosyl transferase, at 1,438,340 to 1,439,176 _RS06785 HGI48_RS06790: HGI48_RS06790 - glycosyl transferase, at 1,439,533 to 1,440,399 _RS06790 HGI48_RS06795: HGI48_RS06795 - glycosyltransferase, at 1,440,479 to 1,441,336 _RS06795 Position (kb) 1439 1440 1441Strain fitness (log2 ratio) -3 -2 -1 0 1at 1438.563 kb on + strand, within HGI48_RS06785at 1438.905 kb on + strand, within HGI48_RS06785at 1439.066 kb on + strand, within HGI48_RS06785at 1439.067 kb on - strand, within HGI48_RS06785at 1439.067 kb on - strand, within HGI48_RS06785at 1439.207 kb on - strandat 1439.268 kb on - strandat 1439.331 kb on - strandat 1439.643 kb on + strand, within HGI48_RS06790at 1439.733 kb on + strand, within HGI48_RS06790at 1439.915 kb on + strand, within HGI48_RS06790at 1439.915 kb on + strandat 1440.001 kb on - strand, within HGI48_RS06790at 1440.053 kb on + strandat 1440.101 kb on + strand, within HGI48_RS06790at 1440.235 kb on - strandat 1440.246 kb on - strand, within HGI48_RS06790at 1440.370 kb on + strandat 1440.407 kb on - strandat 1440.994 kb on - strand, within HGI48_RS06795at 1441.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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1,438,563 + HGI48_RS06785 0.27 +0.8
1,438,905 + HGI48_RS06785 0.68 +1.5
1,439,066 + HGI48_RS06785 0.87 +0.4
1,439,067 - HGI48_RS06785 0.87 -0.2
1,439,067 - HGI48_RS06785 0.87 -3.2
1,439,207 - +0.4
1,439,268 - +1.4
1,439,331 - +0.5
1,439,643 + HGI48_RS06790 0.13 -0.8
1,439,733 + HGI48_RS06790 0.23 -0.0
1,439,915 + HGI48_RS06790 0.44 -2.2
1,439,915 + +1.6
1,440,001 - HGI48_RS06790 0.54 -2.5
1,440,053 + -1.0
1,440,101 + HGI48_RS06790 0.66 -1.0
1,440,235 - +0.6
1,440,246 - HGI48_RS06790 0.82 -0.8
1,440,370 + -1.0
1,440,407 - -1.0
1,440,994 - HGI48_RS06795 0.60 -0.5
1,441,335 - -2.2

Or see this region's nucleotide sequence