Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS05415 and HGI48_RS05420 are separated by 435 nucleotides HGI48_RS05420 and HGI48_RS05425 are separated by 359 nucleotides HGI48_RS05425 and HGI48_RS05430 are separated by 166 nucleotides
HGI48_RS05415: HGI48_RS05415 - hypothetical protein, at 1,135,587 to 1,136,183
_RS05415
HGI48_RS05420: HGI48_RS05420 - N-acetyltransferase, at 1,136,619 to 1,137,149
_RS05420
HGI48_RS05425: HGI48_RS05425 - M20 peptidase family dipeptidase, at 1,137,509 to 1,137,712
_RS05425
HGI48_RS05430: HGI48_RS05430 - HAD family hydrolase, at 1,137,879 to 1,138,535
_RS05430
Position (kb) 1136
1137
1138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1135.655 kb on + strand, within HGI48_RS05415 at 1135.656 kb on - strand at 1135.656 kb on - strand, within HGI48_RS05415 at 1135.797 kb on - strand, within HGI48_RS05415 at 1135.797 kb on - strand, within HGI48_RS05415 at 1135.797 kb on - strand, within HGI48_RS05415 at 1135.800 kb on - strand at 1135.877 kb on + strand, within HGI48_RS05415 at 1135.950 kb on + strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.951 kb on - strand, within HGI48_RS05415 at 1135.973 kb on + strand, within HGI48_RS05415 at 1135.973 kb on + strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.974 kb on - strand, within HGI48_RS05415 at 1135.977 kb on - strand, within HGI48_RS05415 at 1135.977 kb on - strand, within HGI48_RS05415 at 1135.977 kb on - strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.049 kb on + strand, within HGI48_RS05415 at 1136.050 kb on - strand, within HGI48_RS05415 at 1136.062 kb on + strand, within HGI48_RS05415 at 1136.062 kb on + strand, within HGI48_RS05415 at 1136.062 kb on + strand at 1136.062 kb on + strand, within HGI48_RS05415 at 1136.062 kb on + strand at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.063 kb on - strand, within HGI48_RS05415 at 1136.064 kb on + strand, within HGI48_RS05415 at 1136.064 kb on + strand, within HGI48_RS05415 at 1136.064 kb on + strand at 1136.064 kb on + strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand, within HGI48_RS05415 at 1136.065 kb on - strand at 1136.067 kb on - strand, within HGI48_RS05415 at 1136.073 kb on - strand, within HGI48_RS05415 at 1136.101 kb on + strand, within HGI48_RS05415 at 1136.185 kb on - strand at 1136.185 kb on - strand at 1136.196 kb on + strand at 1136.226 kb on + strand at 1136.255 kb on + strand at 1136.255 kb on + strand at 1136.256 kb on - strand at 1136.260 kb on - strand at 1136.260 kb on - strand at 1136.285 kb on - strand at 1136.346 kb on - strand at 1136.361 kb on + strand at 1136.390 kb on - strand at 1136.407 kb on - strand at 1136.441 kb on + strand at 1136.450 kb on - strand at 1136.450 kb on - strand at 1136.492 kb on - strand at 1136.492 kb on - strand at 1136.492 kb on - strand at 1136.529 kb on - strand at 1136.533 kb on + strand at 1136.533 kb on + strand at 1136.565 kb on + strand at 1136.612 kb on + strand at 1136.613 kb on - strand at 1136.613 kb on - strand at 1136.632 kb on + strand at 1136.632 kb on + strand at 1136.632 kb on + strand at 1136.632 kb on + strand at 1136.633 kb on - strand at 1136.657 kb on + strand at 1136.657 kb on + strand at 1136.657 kb on + strand at 1136.657 kb on + strand at 1136.657 kb on + strand at 1136.658 kb on - strand at 1136.658 kb on - strand at 1136.658 kb on - strand at 1136.675 kb on + strand, within HGI48_RS05420 at 1136.675 kb on + strand, within HGI48_RS05420 at 1136.679 kb on + strand, within HGI48_RS05420 at 1136.679 kb on + strand at 1136.679 kb on + strand at 1136.680 kb on - strand, within HGI48_RS05420 at 1136.680 kb on - strand at 1136.680 kb on - strand, within HGI48_RS05420 at 1136.700 kb on - strand, within HGI48_RS05420 at 1136.700 kb on - strand, within HGI48_RS05420 at 1136.700 kb on - strand, within HGI48_RS05420 at 1136.805 kb on - strand, within HGI48_RS05420 at 1136.805 kb on - strand, within HGI48_RS05420 at 1136.826 kb on + strand, within HGI48_RS05420 at 1136.826 kb on + strand, within HGI48_RS05420 at 1136.838 kb on + strand, within HGI48_RS05420 at 1136.884 kb on - strand, within HGI48_RS05420 at 1136.994 kb on - strand, within HGI48_RS05420 at 1136.994 kb on - strand, within HGI48_RS05420 at 1137.019 kb on + strand, within HGI48_RS05420 at 1137.019 kb on + strand, within HGI48_RS05420 at 1137.019 kb on + strand, within HGI48_RS05420 at 1137.020 kb on - strand, within HGI48_RS05420 at 1137.040 kb on + strand, within HGI48_RS05420 at 1137.155 kb on + strand at 1137.155 kb on + strand at 1137.156 kb on - strand at 1137.219 kb on + strand at 1137.220 kb on - strand at 1137.275 kb on + strand at 1137.275 kb on + strand at 1137.297 kb on + strand at 1137.298 kb on - strand at 1137.298 kb on - strand at 1137.300 kb on + strand at 1137.301 kb on - strand at 1137.343 kb on + strand at 1137.344 kb on - strand at 1137.344 kb on - strand at 1137.344 kb on - strand at 1137.420 kb on + strand at 1137.420 kb on + strand at 1137.420 kb on + strand at 1137.476 kb on + strand at 1137.476 kb on + strand at 1137.477 kb on - strand at 1137.792 kb on - strand at 1138.060 kb on - strand, within HGI48_RS05430 at 1138.084 kb on + strand, within HGI48_RS05430
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 1,135,655 + HGI48_RS05415 0.11 -0.1 1,135,656 - -0.9 1,135,656 - HGI48_RS05415 0.12 -0.3 1,135,797 - HGI48_RS05415 0.35 -0.9 1,135,797 - HGI48_RS05415 0.35 -2.1 1,135,797 - HGI48_RS05415 0.35 +0.1 1,135,800 - -0.9 1,135,877 + HGI48_RS05415 0.49 -1.1 1,135,950 + HGI48_RS05415 0.61 -0.5 1,135,951 - HGI48_RS05415 0.61 +0.5 1,135,951 - HGI48_RS05415 0.61 -1.6 1,135,951 - HGI48_RS05415 0.61 -0.3 1,135,951 - HGI48_RS05415 0.61 -0.2 1,135,951 - +2.1 1,135,951 - HGI48_RS05415 0.61 -2.2 1,135,951 - HGI48_RS05415 0.61 -1.0 1,135,973 + HGI48_RS05415 0.65 -1.3 1,135,973 + HGI48_RS05415 0.65 +0.2 1,135,974 - HGI48_RS05415 0.65 -1.1 1,135,974 - HGI48_RS05415 0.65 -1.3 1,135,974 - HGI48_RS05415 0.65 -0.8 1,135,974 - HGI48_RS05415 0.65 -1.3 1,135,977 - HGI48_RS05415 0.65 -1.5 1,135,977 - HGI48_RS05415 0.65 -1.4 1,135,977 - HGI48_RS05415 0.65 -1.5 1,136,049 + HGI48_RS05415 0.77 +0.7 1,136,049 + HGI48_RS05415 0.77 -1.1 1,136,049 + HGI48_RS05415 0.77 +0.0 1,136,049 + HGI48_RS05415 0.77 -0.4 1,136,050 - HGI48_RS05415 0.78 -0.9 1,136,062 + HGI48_RS05415 0.80 -0.3 1,136,062 + HGI48_RS05415 0.80 +1.5 1,136,062 + +1.3 1,136,062 + HGI48_RS05415 0.80 -0.5 1,136,062 + -0.9 1,136,063 - HGI48_RS05415 0.80 +0.2 1,136,063 - HGI48_RS05415 0.80 -0.9 1,136,063 - HGI48_RS05415 0.80 -0.2 1,136,063 - HGI48_RS05415 0.80 -0.8 1,136,063 - HGI48_RS05415 0.80 -0.2 1,136,063 - HGI48_RS05415 0.80 +0.6 1,136,064 + HGI48_RS05415 0.80 +0.0 1,136,064 + HGI48_RS05415 0.80 -0.4 1,136,064 + -0.9 1,136,064 + HGI48_RS05415 0.80 -2.5 1,136,065 - HGI48_RS05415 0.80 -1.2 1,136,065 - HGI48_RS05415 0.80 +0.7 1,136,065 - HGI48_RS05415 0.80 -0.9 1,136,065 - HGI48_RS05415 0.80 -2.5 1,136,065 - HGI48_RS05415 0.80 +0.9 1,136,065 - HGI48_RS05415 0.80 -1.9 1,136,065 - HGI48_RS05415 0.80 +0.9 1,136,065 - +0.7 1,136,067 - HGI48_RS05415 0.80 -1.9 1,136,073 - HGI48_RS05415 0.81 +0.4 1,136,101 + HGI48_RS05415 0.86 +0.3 1,136,185 - -1.6 1,136,185 - -0.3 1,136,196 + -1.9 1,136,226 + -0.3 1,136,255 + -0.3 1,136,255 + -1.4 1,136,256 - +0.7 1,136,260 - -1.1 1,136,260 - -0.2 1,136,285 - -2.1 1,136,346 - -0.4 1,136,361 + -2.1 1,136,390 - +0.7 1,136,407 - -0.5 1,136,441 + +1.2 1,136,450 - +0.2 1,136,450 - +0.7 1,136,492 - +1.1 1,136,492 - +0.7 1,136,492 - -1.3 1,136,529 - -1.9 1,136,533 + +0.3 1,136,533 + -1.3 1,136,565 + -0.6 1,136,612 + -0.5 1,136,613 - -0.3 1,136,613 - +2.3 1,136,632 + -0.6 1,136,632 + +0.2 1,136,632 + +1.1 1,136,632 + -0.0 1,136,633 - +1.1 1,136,657 + +0.9 1,136,657 + +0.3 1,136,657 + -1.3 1,136,657 + -0.1 1,136,657 + -0.3 1,136,658 - -1.3 1,136,658 - -0.9 1,136,658 - -0.1 1,136,675 + HGI48_RS05420 0.11 -1.4 1,136,675 + HGI48_RS05420 0.11 -0.1 1,136,679 + HGI48_RS05420 0.11 +0.7 1,136,679 + -0.9 1,136,679 + -0.9 1,136,680 - HGI48_RS05420 0.11 -1.0 1,136,680 - -0.3 1,136,680 - HGI48_RS05420 0.11 -0.5 1,136,700 - HGI48_RS05420 0.15 +1.3 1,136,700 - HGI48_RS05420 0.15 +0.1 1,136,700 - HGI48_RS05420 0.15 -1.3 1,136,805 - HGI48_RS05420 0.35 -0.3 1,136,805 - HGI48_RS05420 0.35 -1.0 1,136,826 + HGI48_RS05420 0.39 -0.3 1,136,826 + HGI48_RS05420 0.39 -2.1 1,136,838 + HGI48_RS05420 0.41 -0.3 1,136,884 - HGI48_RS05420 0.50 -0.0 1,136,994 - HGI48_RS05420 0.71 -1.2 1,136,994 - HGI48_RS05420 0.71 +0.7 1,137,019 + HGI48_RS05420 0.75 +1.7 1,137,019 + HGI48_RS05420 0.75 +1.1 1,137,019 + HGI48_RS05420 0.75 +0.7 1,137,020 - HGI48_RS05420 0.76 -1.3 1,137,040 + HGI48_RS05420 0.79 +0.9 1,137,155 + +0.1 1,137,155 + +0.7 1,137,156 - -1.0 1,137,219 + +0.5 1,137,220 - -1.1 1,137,275 + +1.7 1,137,275 + -1.6 1,137,297 + +0.1 1,137,298 - -1.6 1,137,298 - -1.1 1,137,300 + +0.5 1,137,301 - -1.6 1,137,343 + -1.6 1,137,344 - +0.3 1,137,344 - -0.6 1,137,344 - -2.1 1,137,420 + -1.0 1,137,420 + +0.1 1,137,420 + +0.5 1,137,476 + -0.4 1,137,476 + -0.7 1,137,477 - -0.9 1,137,792 - -0.6 1,138,060 - HGI48_RS05430 0.28 +0.3 1,138,084 + HGI48_RS05430 0.31 -0.6
Or see this region's nucleotide sequence