Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04765

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04760 and HGI48_RS04765 are separated by 231 nucleotidesHGI48_RS04765 and HGI48_RS04770 are separated by 67 nucleotidesHGI48_RS04770 and HGI48_RS04775 are separated by 70 nucleotides HGI48_RS04760: HGI48_RS04760 - hypothetical protein, at 997,077 to 999,779 _RS04760 HGI48_RS04765: HGI48_RS04765 - hypothetical protein, at 1,000,011 to 1,000,655 _RS04765 HGI48_RS04770: HGI48_RS04770 - acyl carrier protein, at 1,000,723 to 1,000,968 _RS04770 HGI48_RS04775: HGI48_RS04775 - nucleotidyltransferase family protein, at 1,001,039 to 1,002,079 _RS04775 Position (kb) 1000 1001Strain fitness (log2 ratio) -2 -1 0 1 2at 999.026 kb on + strand, within HGI48_RS04760at 999.185 kb on + strand, within HGI48_RS04760at 999.185 kb on + strandat 999.185 kb on + strand, within HGI48_RS04760at 999.186 kb on - strand, within HGI48_RS04760at 999.186 kb on - strand, within HGI48_RS04760at 999.231 kb on + strand, within HGI48_RS04760at 999.235 kb on + strand, within HGI48_RS04760at 999.236 kb on - strand, within HGI48_RS04760at 999.248 kb on + strand, within HGI48_RS04760at 999.252 kb on - strand, within HGI48_RS04760at 999.367 kb on + strandat 999.562 kb on + strandat 999.562 kb on + strandat 999.689 kb on + strandat 999.760 kb on - strandat 999.798 kb on + strandat 1000.164 kb on - strand, within HGI48_RS04765at 1000.485 kb on + strand, within HGI48_RS04765at 1000.489 kb on - strand, within HGI48_RS04765at 1000.541 kb on - strand, within HGI48_RS04765at 1000.662 kb on - strandat 1000.989 kb on + strandat 1001.142 kb on + strandat 1001.302 kb on - strand, within HGI48_RS04775at 1001.325 kb on + strand, within HGI48_RS04775at 1001.326 kb on - strand, within HGI48_RS04775at 1001.492 kb on + strand, within HGI48_RS04775at 1001.492 kb on + strand, within HGI48_RS04775at 1001.492 kb on + strandat 1001.492 kb on + strand, within HGI48_RS04775at 1001.496 kb on + strandat 1001.573 kb on + strand, within HGI48_RS04775at 1001.573 kb on + strand, within HGI48_RS04775

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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999,026 + HGI48_RS04760 0.72 -1.8
999,185 + HGI48_RS04760 0.78 +0.3
999,185 + +0.8
999,185 + HGI48_RS04760 0.78 -0.7
999,186 - HGI48_RS04760 0.78 -1.9
999,186 - HGI48_RS04760 0.78 -0.2
999,231 + HGI48_RS04760 0.80 -0.5
999,235 + HGI48_RS04760 0.80 +0.8
999,236 - HGI48_RS04760 0.80 +1.1
999,248 + HGI48_RS04760 0.80 +0.5
999,252 - HGI48_RS04760 0.80 +0.8
999,367 + +0.8
999,562 + +0.8
999,562 + -1.0
999,689 + +0.8
999,760 - -1.2
999,798 + -2.2
1,000,164 - HGI48_RS04765 0.24 +0.9
1,000,485 + HGI48_RS04765 0.73 +0.5
1,000,489 - HGI48_RS04765 0.74 +0.5
1,000,541 - HGI48_RS04765 0.82 -1.0
1,000,662 - +0.4
1,000,989 + -0.8
1,001,142 + -1.1
1,001,302 - HGI48_RS04775 0.25 +0.4
1,001,325 + HGI48_RS04775 0.27 -0.2
1,001,326 - HGI48_RS04775 0.28 -0.0
1,001,492 + HGI48_RS04775 0.44 -0.5
1,001,492 + HGI48_RS04775 0.44 -0.8
1,001,492 + +2.2
1,001,492 + HGI48_RS04775 0.44 -1.2
1,001,496 + -0.2
1,001,573 + HGI48_RS04775 0.51 -0.4
1,001,573 + HGI48_RS04775 0.51 -0.2

Or see this region's nucleotide sequence