Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04505 and HGI48_RS04510 are separated by 106 nucleotides HGI48_RS04510 and HGI48_RS04515 are separated by 91 nucleotides HGI48_RS04515 and HGI48_RS04520 are separated by 98 nucleotides
HGI48_RS04505: HGI48_RS04505 - LysR family transcriptional regulator, at 945,550 to 946,416
_RS04505
HGI48_RS04510: HGI48_RS04510 - multidrug/biocide efflux PACE transporter, at 946,523 to 946,987
_RS04510
HGI48_RS04515: HGI48_RS04515 - DNA-3-methyladenine glycosylase 2 family protein, at 947,079 to 947,753
_RS04515
HGI48_RS04520: HGI48_RS04520 - DNA oxidative demethylase AlkB, at 947,852 to 948,505
_RS04520
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 945.551 kb on + strand at 945.689 kb on + strand, within HGI48_RS04505 at 945.690 kb on - strand, within HGI48_RS04505 at 945.718 kb on - strand, within HGI48_RS04505 at 945.761 kb on + strand at 945.815 kb on + strand, within HGI48_RS04505 at 945.815 kb on + strand, within HGI48_RS04505 at 945.815 kb on + strand at 945.815 kb on + strand, within HGI48_RS04505 at 945.816 kb on - strand, within HGI48_RS04505 at 945.816 kb on - strand at 945.902 kb on + strand, within HGI48_RS04505 at 945.903 kb on - strand, within HGI48_RS04505 at 945.903 kb on - strand at 945.903 kb on - strand at 945.952 kb on - strand, within HGI48_RS04505 at 946.013 kb on - strand, within HGI48_RS04505 at 946.082 kb on - strand, within HGI48_RS04505 at 946.082 kb on - strand, within HGI48_RS04505 at 946.094 kb on + strand, within HGI48_RS04505 at 946.095 kb on - strand, within HGI48_RS04505 at 946.420 kb on + strand at 946.453 kb on + strand at 946.500 kb on + strand at 946.500 kb on + strand at 946.500 kb on + strand at 946.500 kb on + strand at 946.500 kb on + strand at 946.500 kb on + strand at 946.501 kb on - strand at 946.501 kb on - strand at 946.522 kb on + strand at 946.632 kb on + strand, within HGI48_RS04510 at 946.633 kb on - strand, within HGI48_RS04510 at 946.721 kb on + strand, within HGI48_RS04510 at 946.760 kb on - strand, within HGI48_RS04510 at 946.855 kb on + strand, within HGI48_RS04510 at 946.855 kb on + strand, within HGI48_RS04510 at 946.856 kb on - strand, within HGI48_RS04510 at 946.914 kb on - strand, within HGI48_RS04510 at 946.915 kb on + strand, within HGI48_RS04510 at 946.915 kb on + strand, within HGI48_RS04510 at 946.915 kb on + strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.916 kb on - strand, within HGI48_RS04510 at 946.925 kb on + strand, within HGI48_RS04510 at 946.925 kb on + strand at 946.925 kb on + strand, within HGI48_RS04510 at 946.925 kb on + strand, within HGI48_RS04510 at 946.926 kb on - strand, within HGI48_RS04510 at 946.926 kb on - strand, within HGI48_RS04510 at 946.937 kb on + strand, within HGI48_RS04510 at 946.974 kb on + strand at 946.974 kb on + strand at 946.974 kb on + strand at 946.974 kb on + strand at 947.140 kb on + strand at 947.141 kb on - strand at 947.199 kb on - strand, within HGI48_RS04515 at 947.222 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.224 kb on + strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.225 kb on - strand, within HGI48_RS04515 at 947.231 kb on - strand, within HGI48_RS04515 at 947.547 kb on + strand, within HGI48_RS04515 at 947.547 kb on + strand at 947.547 kb on + strand, within HGI48_RS04515 at 947.547 kb on + strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.548 kb on - strand, within HGI48_RS04515 at 947.620 kb on + strand, within HGI48_RS04515 at 947.620 kb on + strand, within HGI48_RS04515 at 947.621 kb on - strand, within HGI48_RS04515 at 947.655 kb on - strand, within HGI48_RS04515 at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.767 kb on + strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.768 kb on - strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.814 kb on + strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.815 kb on - strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.816 kb on + strand at 947.817 kb on - strand at 947.817 kb on - strand at 947.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 945,551 + -0.5 945,689 + HGI48_RS04505 0.16 +0.6 945,690 - HGI48_RS04505 0.16 -0.2 945,718 - HGI48_RS04505 0.19 +0.8 945,761 + -0.8 945,815 + HGI48_RS04505 0.31 +0.4 945,815 + HGI48_RS04505 0.31 -2.0 945,815 + -0.8 945,815 + HGI48_RS04505 0.31 -2.7 945,816 - HGI48_RS04505 0.31 -0.8 945,816 - -0.8 945,902 + HGI48_RS04505 0.41 -0.0 945,903 - HGI48_RS04505 0.41 -1.4 945,903 - +0.8 945,903 - +1.8 945,952 - HGI48_RS04505 0.46 -1.1 946,013 - HGI48_RS04505 0.53 -0.2 946,082 - HGI48_RS04505 0.61 -0.2 946,082 - HGI48_RS04505 0.61 +1.0 946,094 + HGI48_RS04505 0.63 +0.0 946,095 - HGI48_RS04505 0.63 -0.0 946,420 + -2.5 946,453 + +0.7 946,500 + +0.2 946,500 + -1.4 946,500 + -0.2 946,500 + -0.8 946,500 + -2.0 946,500 + -0.2 946,501 - -0.8 946,501 - +1.5 946,522 + -1.2 946,632 + HGI48_RS04510 0.23 -0.0 946,633 - HGI48_RS04510 0.24 +1.3 946,721 + HGI48_RS04510 0.43 -1.5 946,760 - HGI48_RS04510 0.51 +1.4 946,855 + HGI48_RS04510 0.71 +0.7 946,855 + HGI48_RS04510 0.71 -1.2 946,856 - HGI48_RS04510 0.72 -0.5 946,914 - HGI48_RS04510 0.84 -1.2 946,915 + HGI48_RS04510 0.84 -1.0 946,915 + HGI48_RS04510 0.84 +0.4 946,915 + HGI48_RS04510 0.84 -1.2 946,916 - HGI48_RS04510 0.85 -0.1 946,916 - HGI48_RS04510 0.85 -0.7 946,916 - HGI48_RS04510 0.85 -2.2 946,916 - HGI48_RS04510 0.85 -0.5 946,916 - HGI48_RS04510 0.85 -1.9 946,916 - HGI48_RS04510 0.85 +1.0 946,925 + HGI48_RS04510 0.86 -0.2 946,925 + +1.4 946,925 + HGI48_RS04510 0.86 +0.9 946,925 + HGI48_RS04510 0.86 +0.4 946,926 - HGI48_RS04510 0.87 +1.5 946,926 - HGI48_RS04510 0.87 -0.2 946,937 + HGI48_RS04510 0.89 +0.6 946,974 + -0.0 946,974 + +0.3 946,974 + -0.5 946,974 + +0.2 947,140 + -0.5 947,141 - -0.2 947,199 - HGI48_RS04515 0.18 -0.4 947,222 + HGI48_RS04515 0.21 +1.0 947,224 + HGI48_RS04515 0.21 +1.5 947,224 + HGI48_RS04515 0.21 +0.5 947,224 + HGI48_RS04515 0.21 -2.0 947,224 + HGI48_RS04515 0.21 -1.0 947,225 - HGI48_RS04515 0.22 +0.2 947,225 - +1.2 947,225 - HGI48_RS04515 0.22 +1.1 947,225 - HGI48_RS04515 0.22 +1.4 947,225 - HGI48_RS04515 0.22 -2.8 947,225 - HGI48_RS04515 0.22 +1.5 947,231 - HGI48_RS04515 0.23 -0.3 947,547 + HGI48_RS04515 0.69 -0.5 947,547 + -0.8 947,547 + HGI48_RS04515 0.69 +0.4 947,547 + HGI48_RS04515 0.69 -0.8 947,548 - HGI48_RS04515 0.69 +0.2 947,548 - HGI48_RS04515 0.69 -0.0 947,548 - HGI48_RS04515 0.69 -1.5 947,548 - HGI48_RS04515 0.69 +0.5 947,620 + HGI48_RS04515 0.80 -1.2 947,620 + HGI48_RS04515 0.80 +0.5 947,621 - HGI48_RS04515 0.80 -1.0 947,655 - HGI48_RS04515 0.85 +0.2 947,767 + -0.9 947,767 + +0.8 947,767 + +0.1 947,767 + +0.1 947,767 + +1.4 947,768 - +0.1 947,768 - +0.8 947,768 - -0.4 947,768 - -0.8 947,768 - -0.2 947,768 - -0.4 947,768 - -2.5 947,768 - -0.2 947,814 + -0.4 947,814 + -1.2 947,814 + +1.2 947,814 + +0.2 947,814 + +1.5 947,814 + -0.2 947,814 + +0.4 947,814 + +1.0 947,814 + -0.2 947,814 + -0.7 947,814 + +1.4 947,814 + -0.8 947,814 + +0.8 947,814 + +0.2 947,814 + -1.5 947,815 - +0.0 947,815 - -0.8 947,815 - -0.8 947,815 - -0.8 947,815 - +0.5 947,815 - +0.9 947,815 - +1.4 947,815 - -0.8 947,815 - -0.9 947,816 + +0.4 947,816 + -2.4 947,816 + +0.2 947,816 + +1.1 947,816 + +0.5 947,817 - +1.5 947,817 - +0.5 947,817 - -0.4
Or see this region's nucleotide sequence