Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04390 and HGI48_RS04395 are separated by 241 nucleotides HGI48_RS04395 and HGI48_RS04400 are separated by 83 nucleotides
HGI48_RS04390: HGI48_RS04390 - cytosine permease, at 919,207 to 920,502
_RS04390
HGI48_RS04395: HGI48_RS04395 - Dyp-type peroxidase, at 920,744 to 921,643
_RS04395
HGI48_RS04400: HGI48_RS04400 - cysteine synthase CysM, at 921,727 to 922,608
_RS04400
Position (kb) 920
921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 919.809 kb on + strand, within HGI48_RS04390 at 919.809 kb on + strand, within HGI48_RS04390 at 919.827 kb on + strand, within HGI48_RS04390 at 919.827 kb on + strand, within HGI48_RS04390 at 919.828 kb on - strand, within HGI48_RS04390 at 919.901 kb on + strand, within HGI48_RS04390 at 919.901 kb on + strand, within HGI48_RS04390 at 919.927 kb on - strand, within HGI48_RS04390 at 919.927 kb on - strand, within HGI48_RS04390 at 919.986 kb on + strand, within HGI48_RS04390 at 919.986 kb on + strand, within HGI48_RS04390 at 919.987 kb on - strand, within HGI48_RS04390 at 919.987 kb on - strand, within HGI48_RS04390 at 919.987 kb on - strand, within HGI48_RS04390 at 920.023 kb on - strand, within HGI48_RS04390 at 920.059 kb on - strand, within HGI48_RS04390 at 920.059 kb on - strand, within HGI48_RS04390 at 920.059 kb on - strand, within HGI48_RS04390 at 920.065 kb on + strand, within HGI48_RS04390 at 920.065 kb on + strand, within HGI48_RS04390 at 920.066 kb on - strand, within HGI48_RS04390 at 920.085 kb on - strand, within HGI48_RS04390 at 920.125 kb on + strand, within HGI48_RS04390 at 920.125 kb on + strand, within HGI48_RS04390 at 920.125 kb on + strand, within HGI48_RS04390 at 920.126 kb on - strand, within HGI48_RS04390 at 920.126 kb on - strand, within HGI48_RS04390 at 920.126 kb on - strand at 920.260 kb on + strand, within HGI48_RS04390 at 920.260 kb on + strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.261 kb on - strand, within HGI48_RS04390 at 920.265 kb on + strand, within HGI48_RS04390 at 920.265 kb on + strand, within HGI48_RS04390 at 920.266 kb on - strand, within HGI48_RS04390 at 920.266 kb on - strand, within HGI48_RS04390 at 920.334 kb on + strand at 920.341 kb on + strand, within HGI48_RS04390 at 920.342 kb on - strand, within HGI48_RS04390 at 920.450 kb on - strand at 920.458 kb on - strand at 920.458 kb on - strand at 920.552 kb on + strand at 920.553 kb on - strand at 920.553 kb on - strand at 920.611 kb on - strand at 920.611 kb on - strand at 920.611 kb on - strand at 920.656 kb on + strand at 920.666 kb on + strand at 920.667 kb on - strand at 920.667 kb on - strand at 920.667 kb on - strand at 920.667 kb on - strand at 920.680 kb on + strand at 920.681 kb on - strand at 920.726 kb on - strand at 920.741 kb on + strand at 920.741 kb on + strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.742 kb on - strand at 920.811 kb on + strand at 920.812 kb on - strand at 920.845 kb on + strand at 920.846 kb on - strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand, within HGI48_RS04395 at 921.251 kb on + strand at 921.251 kb on + strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand at 921.252 kb on - strand, within HGI48_RS04395 at 921.252 kb on - strand, within HGI48_RS04395 at 921.453 kb on - strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.482 kb on + strand, within HGI48_RS04395 at 921.494 kb on + strand, within HGI48_RS04395 at 921.495 kb on - strand, within HGI48_RS04395 at 921.510 kb on - strand, within HGI48_RS04395 at 921.510 kb on - strand at 921.510 kb on - strand, within HGI48_RS04395 at 921.581 kb on - strand at 921.602 kb on + strand at 921.603 kb on - strand at 921.603 kb on - strand at 921.639 kb on + strand at 921.639 kb on + strand at 921.639 kb on + strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.640 kb on - strand at 921.641 kb on + strand at 921.658 kb on - strand at 921.757 kb on - strand at 921.773 kb on + strand at 921.773 kb on + strand at 922.043 kb on - strand, within HGI48_RS04400 at 922.319 kb on + strand, within HGI48_RS04400 at 922.320 kb on - strand, within HGI48_RS04400 at 922.320 kb on - strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.372 kb on + strand, within HGI48_RS04400 at 922.373 kb on - strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.374 kb on + strand, within HGI48_RS04400 at 922.383 kb on + strand, within HGI48_RS04400 at 922.404 kb on - strand, within HGI48_RS04400 at 922.414 kb on - strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand, within HGI48_RS04400 at 922.419 kb on + strand at 922.420 kb on - strand at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.420 kb on - strand, within HGI48_RS04400 at 922.634 kb on - strand at 922.635 kb on + strand at 922.636 kb on - strand at 922.636 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 919,809 + HGI48_RS04390 0.46 +0.4 919,809 + HGI48_RS04390 0.46 -0.6 919,827 + HGI48_RS04390 0.48 +0.5 919,827 + HGI48_RS04390 0.48 -0.2 919,828 - HGI48_RS04390 0.48 +0.2 919,901 + HGI48_RS04390 0.54 -1.5 919,901 + HGI48_RS04390 0.54 +0.5 919,927 - HGI48_RS04390 0.56 -0.1 919,927 - HGI48_RS04390 0.56 -2.0 919,986 + HGI48_RS04390 0.60 +0.1 919,986 + HGI48_RS04390 0.60 +0.4 919,987 - HGI48_RS04390 0.60 +1.1 919,987 - HGI48_RS04390 0.60 +1.1 919,987 - HGI48_RS04390 0.60 +0.2 920,023 - HGI48_RS04390 0.63 -2.4 920,059 - HGI48_RS04390 0.66 -0.4 920,059 - HGI48_RS04390 0.66 -0.5 920,059 - HGI48_RS04390 0.66 +0.3 920,065 + HGI48_RS04390 0.66 -1.2 920,065 + HGI48_RS04390 0.66 +1.1 920,066 - HGI48_RS04390 0.66 -1.1 920,085 - HGI48_RS04390 0.68 +0.6 920,125 + HGI48_RS04390 0.71 +0.1 920,125 + HGI48_RS04390 0.71 -0.8 920,125 + HGI48_RS04390 0.71 +0.8 920,126 - HGI48_RS04390 0.71 +0.6 920,126 - HGI48_RS04390 0.71 +0.1 920,126 - +0.2 920,260 + HGI48_RS04390 0.81 +0.7 920,260 + HGI48_RS04390 0.81 -1.5 920,261 - HGI48_RS04390 0.81 +0.4 920,261 - HGI48_RS04390 0.81 +0.8 920,261 - HGI48_RS04390 0.81 -2.5 920,261 - HGI48_RS04390 0.81 +0.0 920,265 + HGI48_RS04390 0.82 -0.5 920,265 + HGI48_RS04390 0.82 -0.6 920,266 - HGI48_RS04390 0.82 +0.3 920,266 - HGI48_RS04390 0.82 +1.4 920,334 + +1.2 920,341 + HGI48_RS04390 0.88 +0.3 920,342 - HGI48_RS04390 0.88 -0.3 920,450 - +0.5 920,458 - -0.5 920,458 - +0.8 920,552 + -0.5 920,553 - -0.8 920,553 - -0.5 920,611 - -0.2 920,611 - -1.6 920,611 - -1.5 920,656 + -2.0 920,666 + -1.2 920,667 - +0.2 920,667 - -0.2 920,667 - +1.0 920,667 - -0.5 920,680 + -0.5 920,681 - +0.5 920,726 - +0.0 920,741 + -0.2 920,741 + +0.8 920,742 - +0.2 920,742 - -1.5 920,742 - -1.5 920,742 - -0.2 920,811 + +1.1 920,812 - +0.5 920,845 + +0.8 920,846 - HGI48_RS04395 0.11 +0.2 921,251 + HGI48_RS04395 0.56 +0.2 921,251 + HGI48_RS04395 0.56 -3.2 921,251 + HGI48_RS04395 0.56 -0.9 921,251 + HGI48_RS04395 0.56 +0.5 921,251 + -0.8 921,251 + HGI48_RS04395 0.56 -1.9 921,252 - HGI48_RS04395 0.56 -0.8 921,252 - HGI48_RS04395 0.56 -1.8 921,252 - HGI48_RS04395 0.56 -0.2 921,252 - +2.4 921,252 - HGI48_RS04395 0.56 -0.8 921,252 - +1.8 921,252 - HGI48_RS04395 0.56 +0.5 921,252 - HGI48_RS04395 0.56 -0.1 921,453 - HGI48_RS04395 0.79 -2.4 921,482 + HGI48_RS04395 0.82 -2.0 921,482 + HGI48_RS04395 0.82 -2.2 921,494 + HGI48_RS04395 0.83 -2.8 921,495 - HGI48_RS04395 0.83 -1.2 921,510 - HGI48_RS04395 0.85 -1.0 921,510 - -0.2 921,510 - HGI48_RS04395 0.85 -1.5 921,581 - -0.4 921,602 + -0.2 921,603 - -2.4 921,603 - -3.1 921,639 + -1.5 921,639 + -0.3 921,639 + +0.1 921,640 - -1.2 921,640 - +0.2 921,640 - -1.8 921,640 - -0.8 921,641 + -2.4 921,658 - +1.0 921,757 - +0.2 921,773 + -0.2 921,773 + +0.5 922,043 - HGI48_RS04400 0.36 -0.4 922,319 + HGI48_RS04400 0.67 +1.0 922,320 - HGI48_RS04400 0.67 -2.2 922,320 - HGI48_RS04400 0.67 -1.5 922,372 + HGI48_RS04400 0.73 +2.0 922,372 + HGI48_RS04400 0.73 +1.3 922,372 + HGI48_RS04400 0.73 -0.0 922,373 - HGI48_RS04400 0.73 +0.0 922,374 + HGI48_RS04400 0.73 -1.4 922,374 + HGI48_RS04400 0.73 -0.2 922,374 + HGI48_RS04400 0.73 +0.2 922,374 + HGI48_RS04400 0.73 -1.0 922,374 + HGI48_RS04400 0.73 +1.0 922,383 + HGI48_RS04400 0.74 +0.5 922,404 - HGI48_RS04400 0.77 +0.0 922,414 - HGI48_RS04400 0.78 -1.5 922,419 + HGI48_RS04400 0.78 -2.0 922,419 + HGI48_RS04400 0.78 -1.1 922,419 + HGI48_RS04400 0.78 +1.5 922,419 + HGI48_RS04400 0.78 +0.2 922,419 + HGI48_RS04400 0.78 +0.3 922,419 + HGI48_RS04400 0.78 -1.5 922,419 + -0.8 922,420 - -0.2 922,420 - HGI48_RS04400 0.79 +0.5 922,420 - HGI48_RS04400 0.79 +0.8 922,420 - HGI48_RS04400 0.79 -1.2 922,420 - HGI48_RS04400 0.79 -1.0 922,634 - +0.2 922,635 + +0.5 922,636 - -2.4 922,636 - -1.2
Or see this region's nucleotide sequence