Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03035

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03025 and HGI48_RS03030 are separated by 124 nucleotidesHGI48_RS03030 and HGI48_RS03035 overlap by 4 nucleotidesHGI48_RS03035 and HGI48_RS03040 overlap by 4 nucleotidesHGI48_RS03040 and HGI48_RS03045 overlap by 8 nucleotides HGI48_RS03025: HGI48_RS03025 - phage virion morphogenesis protein, at 645,930 to 646,373 _RS03025 HGI48_RS03030: HGI48_RS03030 - phage baseplate assembly protein V, at 646,498 to 647,031 _RS03030 HGI48_RS03035: HGI48_RS03035 - GPW/gp25 family protein, at 647,028 to 647,378 _RS03035 HGI48_RS03040: HGI48_RS03040 - baseplate assembly protein, at 647,375 to 648,283 _RS03040 HGI48_RS03045: HGI48_RS03045 - phage tail protein I, at 648,276 to 648,884 _RS03045 Position (kb) 647 648Strain fitness (log2 ratio) -2 -1 0 1 2 3at 646.030 kb on + strand, within HGI48_RS03025at 646.030 kb on + strandat 646.031 kb on - strand, within HGI48_RS03025at 646.115 kb on + strand, within HGI48_RS03025at 646.115 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strandat 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.153 kb on + strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.154 kb on - strand, within HGI48_RS03025at 646.167 kb on + strand, within HGI48_RS03025at 646.293 kb on + strandat 646.294 kb on - strand, within HGI48_RS03025at 646.294 kb on - strand, within HGI48_RS03025at 646.395 kb on + strandat 646.395 kb on + strandat 646.395 kb on + strandat 646.395 kb on + strandat 646.395 kb on + strandat 646.396 kb on - strandat 646.419 kb on + strandat 646.435 kb on + strandat 646.435 kb on + strandat 646.435 kb on + strandat 646.447 kb on + strandat 646.476 kb on + strandat 646.477 kb on - strandat 646.611 kb on - strandat 646.704 kb on + strand, within HGI48_RS03030at 646.780 kb on - strand, within HGI48_RS03030at 646.825 kb on + strand, within HGI48_RS03030at 646.825 kb on + strand, within HGI48_RS03030at 646.957 kb on - strand, within HGI48_RS03030at 646.970 kb on + strand, within HGI48_RS03030at 646.970 kb on + strand, within HGI48_RS03030at 646.970 kb on + strand, within HGI48_RS03030at 646.970 kb on + strand, within HGI48_RS03030at 646.971 kb on - strand, within HGI48_RS03030at 646.971 kb on - strand, within HGI48_RS03030at 646.971 kb on - strand, within HGI48_RS03030at 646.971 kb on - strand, within HGI48_RS03030at 646.971 kb on - strandat 646.971 kb on - strand, within HGI48_RS03030at 646.971 kb on - strand, within HGI48_RS03030at 646.974 kb on + strand, within HGI48_RS03030at 646.974 kb on + strand, within HGI48_RS03030at 646.974 kb on + strand, within HGI48_RS03030at 646.975 kb on - strand, within HGI48_RS03030at 646.975 kb on - strand, within HGI48_RS03030at 646.994 kb on + strandat 646.995 kb on - strandat 647.011 kb on - strandat 647.011 kb on - strandat 647.011 kb on - strandat 647.038 kb on - strandat 647.038 kb on - strandat 647.226 kb on + strand, within HGI48_RS03035at 647.226 kb on + strand, within HGI48_RS03035at 647.226 kb on + strand, within HGI48_RS03035at 647.226 kb on + strand, within HGI48_RS03035at 647.226 kb on + strand, within HGI48_RS03035at 647.226 kb on + strandat 647.226 kb on + strand, within HGI48_RS03035at 647.227 kb on - strand, within HGI48_RS03035at 647.227 kb on - strand, within HGI48_RS03035at 647.227 kb on - strand, within HGI48_RS03035at 647.227 kb on - strand, within HGI48_RS03035at 647.465 kb on + strandat 647.547 kb on + strand, within HGI48_RS03040at 647.548 kb on - strand, within HGI48_RS03040at 647.571 kb on + strandat 647.571 kb on + strand, within HGI48_RS03040at 647.571 kb on + strand, within HGI48_RS03040at 647.571 kb on + strand, within HGI48_RS03040at 647.571 kb on + strand, within HGI48_RS03040at 647.632 kb on + strand, within HGI48_RS03040at 647.650 kb on - strand, within HGI48_RS03040at 647.650 kb on - strand, within HGI48_RS03040at 647.660 kb on + strandat 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.660 kb on + strand, within HGI48_RS03040at 647.661 kb on - strand, within HGI48_RS03040at 647.661 kb on - strand, within HGI48_RS03040at 647.661 kb on - strandat 647.661 kb on - strand, within HGI48_RS03040at 647.682 kb on + strand, within HGI48_RS03040at 647.682 kb on + strand, within HGI48_RS03040at 647.715 kb on + strand, within HGI48_RS03040at 647.804 kb on + strand, within HGI48_RS03040at 647.805 kb on - strand, within HGI48_RS03040at 647.805 kb on - strand, within HGI48_RS03040at 647.805 kb on - strand, within HGI48_RS03040at 647.953 kb on + strand, within HGI48_RS03040at 647.954 kb on - strand, within HGI48_RS03040at 648.018 kb on - strand, within HGI48_RS03040at 648.019 kb on + strand, within HGI48_RS03040at 648.019 kb on + strand, within HGI48_RS03040at 648.020 kb on - strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.038 kb on + strand, within HGI48_RS03040at 648.039 kb on - strand, within HGI48_RS03040at 648.039 kb on - strand, within HGI48_RS03040at 648.039 kb on - strand, within HGI48_RS03040at 648.101 kb on + strand, within HGI48_RS03040at 648.102 kb on - strandat 648.102 kb on - strand, within HGI48_RS03040at 648.152 kb on + strand, within HGI48_RS03040at 648.152 kb on + strand, within HGI48_RS03040at 648.153 kb on - strand, within HGI48_RS03040at 648.153 kb on - strand, within HGI48_RS03040at 648.178 kb on - strand, within HGI48_RS03040at 648.240 kb on - strandat 648.282 kb on - strandat 648.345 kb on - strand, within HGI48_RS03045at 648.376 kb on + strand, within HGI48_RS03045at 648.376 kb on + strand, within HGI48_RS03045at 648.377 kb on - strand, within HGI48_RS03045

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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646,030 + HGI48_RS03025 0.23 -0.3
646,030 + +1.8
646,031 - HGI48_RS03025 0.23 -2.0
646,115 + HGI48_RS03025 0.42 -0.3
646,115 + HGI48_RS03025 0.42 -1.8
646,153 + HGI48_RS03025 0.50 -0.1
646,153 + HGI48_RS03025 0.50 +1.3
646,153 + +0.8
646,153 + HGI48_RS03025 0.50 -1.8
646,153 + HGI48_RS03025 0.50 -1.1
646,153 + HGI48_RS03025 0.50 -1.0
646,154 - HGI48_RS03025 0.50 -1.2
646,154 - HGI48_RS03025 0.50 +0.2
646,154 - HGI48_RS03025 0.50 +0.2
646,154 - HGI48_RS03025 0.50 -0.7
646,154 - HGI48_RS03025 0.50 +0.0
646,167 + HGI48_RS03025 0.53 +1.2
646,293 + +3.2
646,294 - HGI48_RS03025 0.82 +0.1
646,294 - HGI48_RS03025 0.82 +0.2
646,395 + -0.8
646,395 + -0.8
646,395 + +0.7
646,395 + -1.3
646,395 + +0.4
646,396 - +0.8
646,419 + -0.0
646,435 + +1.8
646,435 + +0.1
646,435 + -2.0
646,447 + +1.2
646,476 + -0.8
646,477 - +2.6
646,611 - -0.8
646,704 + HGI48_RS03030 0.39 +0.5
646,780 - HGI48_RS03030 0.53 +1.1
646,825 + HGI48_RS03030 0.61 +0.8
646,825 + HGI48_RS03030 0.61 -0.5
646,957 - HGI48_RS03030 0.86 -0.5
646,970 + HGI48_RS03030 0.88 +0.4
646,970 + HGI48_RS03030 0.88 +0.4
646,970 + HGI48_RS03030 0.88 +0.8
646,970 + HGI48_RS03030 0.88 +0.8
646,971 - HGI48_RS03030 0.89 +0.1
646,971 - HGI48_RS03030 0.89 -1.5
646,971 - HGI48_RS03030 0.89 -0.2
646,971 - HGI48_RS03030 0.89 +0.2
646,971 - +0.8
646,971 - HGI48_RS03030 0.89 -1.7
646,971 - HGI48_RS03030 0.89 +0.6
646,974 + HGI48_RS03030 0.89 -0.0
646,974 + HGI48_RS03030 0.89 +0.8
646,974 + HGI48_RS03030 0.89 -1.5
646,975 - HGI48_RS03030 0.89 +0.1
646,975 - HGI48_RS03030 0.89 +0.6
646,994 + -2.3
646,995 - -0.0
647,011 - -1.2
647,011 - +0.8
647,011 - -0.0
647,038 - -1.5
647,038 - -0.5
647,226 + HGI48_RS03035 0.56 +0.6
647,226 + HGI48_RS03035 0.56 -0.2
647,226 + HGI48_RS03035 0.56 +0.8
647,226 + HGI48_RS03035 0.56 -1.3
647,226 + HGI48_RS03035 0.56 +0.4
647,226 + +2.1
647,226 + HGI48_RS03035 0.56 -2.2
647,227 - HGI48_RS03035 0.57 -1.1
647,227 - HGI48_RS03035 0.57 -0.4
647,227 - HGI48_RS03035 0.57 +0.4
647,227 - HGI48_RS03035 0.57 -2.3
647,465 + +0.2
647,547 + HGI48_RS03040 0.19 +1.4
647,548 - HGI48_RS03040 0.19 -1.8
647,571 + +2.2
647,571 + HGI48_RS03040 0.22 +0.1
647,571 + HGI48_RS03040 0.22 -0.8
647,571 + HGI48_RS03040 0.22 -0.2
647,571 + HGI48_RS03040 0.22 +0.4
647,632 + HGI48_RS03040 0.28 -2.0
647,650 - HGI48_RS03040 0.30 +1.3
647,650 - HGI48_RS03040 0.30 +0.7
647,660 + +0.8
647,660 + HGI48_RS03040 0.31 -0.9
647,660 + HGI48_RS03040 0.31 -1.2
647,660 + HGI48_RS03040 0.31 -0.3
647,660 + HGI48_RS03040 0.31 -2.3
647,660 + HGI48_RS03040 0.31 +1.3
647,661 - HGI48_RS03040 0.31 -1.9
647,661 - HGI48_RS03040 0.31 -0.9
647,661 - +1.8
647,661 - HGI48_RS03040 0.31 -0.3
647,682 + HGI48_RS03040 0.34 +0.8
647,682 + HGI48_RS03040 0.34 +0.8
647,715 + HGI48_RS03040 0.37 -1.0
647,804 + HGI48_RS03040 0.47 -0.3
647,805 - HGI48_RS03040 0.47 +1.3
647,805 - HGI48_RS03040 0.47 +0.5
647,805 - HGI48_RS03040 0.47 +0.2
647,953 + HGI48_RS03040 0.64 -0.2
647,954 - HGI48_RS03040 0.64 -1.2
648,018 - HGI48_RS03040 0.71 +0.6
648,019 + HGI48_RS03040 0.71 -1.2
648,019 + HGI48_RS03040 0.71 +1.4
648,020 - HGI48_RS03040 0.71 -0.3
648,038 + HGI48_RS03040 0.73 +0.8
648,038 + HGI48_RS03040 0.73 -0.5
648,038 + HGI48_RS03040 0.73 +0.6
648,038 + HGI48_RS03040 0.73 +0.1
648,038 + HGI48_RS03040 0.73 -2.3
648,038 + HGI48_RS03040 0.73 +0.2
648,039 - HGI48_RS03040 0.73 -0.4
648,039 - HGI48_RS03040 0.73 -0.6
648,039 - HGI48_RS03040 0.73 +0.2
648,101 + HGI48_RS03040 0.80 +0.4
648,102 - +0.8
648,102 - HGI48_RS03040 0.80 +0.2
648,152 + HGI48_RS03040 0.85 +0.2
648,152 + HGI48_RS03040 0.85 -1.0
648,153 - HGI48_RS03040 0.86 +0.3
648,153 - HGI48_RS03040 0.86 -0.8
648,178 - HGI48_RS03040 0.88 +0.5
648,240 - -0.8
648,282 - -1.4
648,345 - HGI48_RS03045 0.11 +0.5
648,376 + HGI48_RS03045 0.16 -1.5
648,376 + HGI48_RS03045 0.16 +0.4
648,377 - HGI48_RS03045 0.17 -1.5

Or see this region's nucleotide sequence