Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02005 and HGI48_RS02010 overlap by 8 nucleotides HGI48_RS02010 and HGI48_RS02015 are separated by 2 nucleotides
HGI48_RS02005: HGI48_RS02005 - AAA family ATPase, at 442,013 to 443,086
_RS02005
HGI48_RS02010: HGI48_RS02010 - AlpA family transcriptional regulator, at 443,079 to 443,300
_RS02010
HGI48_RS02015: HGI48_RS02015 - integrase domain-containing protein, at 443,303 to 444,181
_RS02015
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.094 kb on - strand at 442.121 kb on + strand, within HGI48_RS02005 at 442.174 kb on + strand, within HGI48_RS02005 at 442.243 kb on + strand, within HGI48_RS02005 at 442.244 kb on - strand, within HGI48_RS02005 at 442.268 kb on - strand, within HGI48_RS02005 at 442.344 kb on + strand, within HGI48_RS02005 at 442.344 kb on + strand, within HGI48_RS02005 at 442.344 kb on + strand, within HGI48_RS02005 at 442.345 kb on - strand, within HGI48_RS02005 at 442.345 kb on - strand, within HGI48_RS02005 at 442.345 kb on - strand, within HGI48_RS02005 at 442.345 kb on - strand at 442.346 kb on + strand, within HGI48_RS02005 at 442.346 kb on + strand, within HGI48_RS02005 at 442.346 kb on + strand, within HGI48_RS02005 at 442.347 kb on - strand, within HGI48_RS02005 at 442.347 kb on - strand, within HGI48_RS02005 at 442.347 kb on - strand at 442.368 kb on + strand, within HGI48_RS02005 at 442.369 kb on - strand, within HGI48_RS02005 at 442.369 kb on - strand, within HGI48_RS02005 at 442.369 kb on - strand, within HGI48_RS02005 at 442.369 kb on - strand, within HGI48_RS02005 at 442.419 kb on - strand, within HGI48_RS02005 at 442.419 kb on - strand, within HGI48_RS02005 at 442.504 kb on + strand, within HGI48_RS02005 at 442.564 kb on + strand at 442.564 kb on + strand, within HGI48_RS02005 at 442.564 kb on + strand at 442.565 kb on - strand, within HGI48_RS02005 at 442.565 kb on - strand, within HGI48_RS02005 at 442.565 kb on - strand, within HGI48_RS02005 at 442.566 kb on + strand, within HGI48_RS02005 at 442.566 kb on + strand, within HGI48_RS02005 at 442.566 kb on + strand, within HGI48_RS02005 at 442.567 kb on - strand, within HGI48_RS02005 at 442.567 kb on - strand, within HGI48_RS02005 at 442.567 kb on - strand, within HGI48_RS02005 at 442.567 kb on - strand, within HGI48_RS02005 at 442.567 kb on - strand, within HGI48_RS02005 at 442.567 kb on - strand at 442.583 kb on - strand, within HGI48_RS02005 at 442.669 kb on + strand, within HGI48_RS02005 at 442.669 kb on + strand, within HGI48_RS02005 at 442.685 kb on - strand, within HGI48_RS02005 at 442.703 kb on + strand, within HGI48_RS02005 at 442.703 kb on + strand, within HGI48_RS02005 at 442.712 kb on + strand, within HGI48_RS02005 at 442.712 kb on + strand, within HGI48_RS02005 at 442.713 kb on - strand, within HGI48_RS02005 at 442.713 kb on - strand, within HGI48_RS02005 at 442.713 kb on - strand, within HGI48_RS02005 at 442.715 kb on + strand, within HGI48_RS02005 at 442.715 kb on + strand, within HGI48_RS02005 at 442.715 kb on + strand, within HGI48_RS02005 at 442.715 kb on + strand at 442.715 kb on + strand, within HGI48_RS02005 at 442.716 kb on - strand, within HGI48_RS02005 at 442.716 kb on - strand, within HGI48_RS02005 at 442.716 kb on - strand, within HGI48_RS02005 at 442.786 kb on + strand, within HGI48_RS02005 at 442.848 kb on + strand, within HGI48_RS02005 at 442.848 kb on + strand, within HGI48_RS02005 at 442.848 kb on + strand at 442.848 kb on + strand, within HGI48_RS02005 at 442.848 kb on + strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.849 kb on - strand, within HGI48_RS02005 at 442.852 kb on + strand, within HGI48_RS02005 at 442.852 kb on + strand, within HGI48_RS02005 at 442.852 kb on + strand, within HGI48_RS02005 at 442.853 kb on - strand, within HGI48_RS02005 at 442.853 kb on - strand, within HGI48_RS02005 at 442.938 kb on + strand, within HGI48_RS02005 at 442.938 kb on + strand, within HGI48_RS02005 at 442.939 kb on - strand, within HGI48_RS02005 at 442.986 kb on + strand at 442.986 kb on + strand at 442.986 kb on + strand at 442.986 kb on + strand at 442.987 kb on - strand at 442.987 kb on - strand at 443.001 kb on + strand at 443.002 kb on - strand at 443.002 kb on - strand at 443.080 kb on + strand at 443.080 kb on + strand at 443.081 kb on - strand at 443.110 kb on - strand, within HGI48_RS02010 at 443.129 kb on + strand, within HGI48_RS02010 at 443.130 kb on - strand, within HGI48_RS02010 at 443.230 kb on + strand, within HGI48_RS02010 at 443.231 kb on - strand, within HGI48_RS02010 at 443.231 kb on - strand at 443.265 kb on + strand, within HGI48_RS02010 at 443.274 kb on + strand, within HGI48_RS02010 at 443.274 kb on + strand, within HGI48_RS02010 at 443.317 kb on + strand at 443.318 kb on - strand at 443.323 kb on - strand at 443.418 kb on + strand at 443.418 kb on + strand, within HGI48_RS02015 at 443.419 kb on - strand, within HGI48_RS02015 at 443.421 kb on + strand, within HGI48_RS02015 at 443.428 kb on + strand, within HGI48_RS02015 at 443.498 kb on - strand, within HGI48_RS02015 at 443.546 kb on + strand, within HGI48_RS02015 at 443.557 kb on + strand, within HGI48_RS02015 at 443.557 kb on + strand, within HGI48_RS02015 at 443.557 kb on + strand, within HGI48_RS02015 at 443.558 kb on - strand, within HGI48_RS02015 at 443.558 kb on - strand, within HGI48_RS02015 at 443.566 kb on + strand, within HGI48_RS02015 at 443.566 kb on + strand, within HGI48_RS02015 at 443.567 kb on - strand, within HGI48_RS02015 at 443.567 kb on - strand, within HGI48_RS02015 at 443.647 kb on + strand, within HGI48_RS02015 at 443.648 kb on - strand, within HGI48_RS02015 at 443.650 kb on + strand, within HGI48_RS02015 at 443.779 kb on + strand, within HGI48_RS02015 at 443.780 kb on - strand, within HGI48_RS02015 at 443.813 kb on + strand, within HGI48_RS02015 at 443.887 kb on + strand, within HGI48_RS02015 at 443.887 kb on + strand, within HGI48_RS02015 at 443.887 kb on + strand at 443.888 kb on - strand, within HGI48_RS02015 at 443.888 kb on - strand, within HGI48_RS02015 at 443.909 kb on - strand, within HGI48_RS02015 at 443.966 kb on - strand, within HGI48_RS02015 at 443.974 kb on + strand, within HGI48_RS02015 at 443.975 kb on - strand, within HGI48_RS02015 at 443.987 kb on - strand at 444.012 kb on + strand at 444.012 kb on + strand, within HGI48_RS02015 at 444.012 kb on + strand, within HGI48_RS02015 at 444.013 kb on - strand, within HGI48_RS02015 at 444.013 kb on - strand, within HGI48_RS02015 at 444.013 kb on - strand, within HGI48_RS02015 at 444.013 kb on - strand, within HGI48_RS02015 at 444.013 kb on - strand, within HGI48_RS02015 at 444.013 kb on - strand, within HGI48_RS02015 at 444.023 kb on - strand at 444.028 kb on + strand, within HGI48_RS02015 at 444.028 kb on + strand, within HGI48_RS02015 at 444.029 kb on - strand at 444.047 kb on - strand at 444.124 kb on + strand at 444.170 kb on + strand at 444.170 kb on + strand at 444.171 kb on - strand at 444.175 kb on + strand at 444.175 kb on + strand at 444.176 kb on - strand at 444.176 kb on - strand at 444.181 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 442,094 - -0.2 442,121 + HGI48_RS02005 0.10 +0.5 442,174 + HGI48_RS02005 0.15 -1.0 442,243 + HGI48_RS02005 0.21 +0.2 442,244 - HGI48_RS02005 0.22 +0.4 442,268 - HGI48_RS02005 0.24 +0.0 442,344 + HGI48_RS02005 0.31 +0.3 442,344 + HGI48_RS02005 0.31 -0.1 442,344 + HGI48_RS02005 0.31 -1.3 442,345 - HGI48_RS02005 0.31 +0.6 442,345 - HGI48_RS02005 0.31 -0.2 442,345 - HGI48_RS02005 0.31 -1.0 442,345 - +2.1 442,346 + HGI48_RS02005 0.31 +1.2 442,346 + HGI48_RS02005 0.31 +0.1 442,346 + HGI48_RS02005 0.31 -0.1 442,347 - HGI48_RS02005 0.31 -0.2 442,347 - HGI48_RS02005 0.31 -2.0 442,347 - -0.8 442,368 + HGI48_RS02005 0.33 -0.5 442,369 - HGI48_RS02005 0.33 +0.5 442,369 - HGI48_RS02005 0.33 -0.8 442,369 - HGI48_RS02005 0.33 +0.6 442,369 - HGI48_RS02005 0.33 -2.5 442,419 - HGI48_RS02005 0.38 +1.0 442,419 - HGI48_RS02005 0.38 -0.0 442,504 + HGI48_RS02005 0.46 -2.0 442,564 + +1.8 442,564 + HGI48_RS02005 0.51 +0.3 442,564 + +1.6 442,565 - HGI48_RS02005 0.51 +0.6 442,565 - HGI48_RS02005 0.51 +0.4 442,565 - HGI48_RS02005 0.51 -1.2 442,566 + HGI48_RS02005 0.51 -0.6 442,566 + HGI48_RS02005 0.51 +0.4 442,566 + HGI48_RS02005 0.51 -0.5 442,567 - HGI48_RS02005 0.52 -0.8 442,567 - HGI48_RS02005 0.52 -0.4 442,567 - HGI48_RS02005 0.52 +0.7 442,567 - HGI48_RS02005 0.52 -0.9 442,567 - HGI48_RS02005 0.52 +0.9 442,567 - +1.4 442,583 - HGI48_RS02005 0.53 +1.3 442,669 + HGI48_RS02005 0.61 +1.1 442,669 + HGI48_RS02005 0.61 -1.3 442,685 - HGI48_RS02005 0.63 -0.0 442,703 + HGI48_RS02005 0.64 +1.2 442,703 + HGI48_RS02005 0.64 +1.2 442,712 + HGI48_RS02005 0.65 -1.3 442,712 + HGI48_RS02005 0.65 -0.2 442,713 - HGI48_RS02005 0.65 +0.8 442,713 - HGI48_RS02005 0.65 +1.6 442,713 - HGI48_RS02005 0.65 -0.2 442,715 + HGI48_RS02005 0.65 +1.1 442,715 + HGI48_RS02005 0.65 +1.0 442,715 + HGI48_RS02005 0.65 -1.5 442,715 + -0.2 442,715 + HGI48_RS02005 0.65 -0.9 442,716 - HGI48_RS02005 0.65 -0.7 442,716 - HGI48_RS02005 0.65 -1.5 442,716 - HGI48_RS02005 0.65 -1.0 442,786 + HGI48_RS02005 0.72 -0.2 442,848 + HGI48_RS02005 0.78 -2.3 442,848 + HGI48_RS02005 0.78 -1.5 442,848 + -0.2 442,848 + HGI48_RS02005 0.78 +1.1 442,848 + HGI48_RS02005 0.78 -0.6 442,849 - HGI48_RS02005 0.78 -1.0 442,849 - HGI48_RS02005 0.78 -1.2 442,849 - HGI48_RS02005 0.78 -2.0 442,849 - HGI48_RS02005 0.78 +0.2 442,849 - HGI48_RS02005 0.78 +0.5 442,849 - HGI48_RS02005 0.78 +0.6 442,849 - HGI48_RS02005 0.78 +0.4 442,852 + HGI48_RS02005 0.78 -0.7 442,852 + HGI48_RS02005 0.78 -0.0 442,852 + HGI48_RS02005 0.78 -1.2 442,853 - HGI48_RS02005 0.78 +0.8 442,853 - HGI48_RS02005 0.78 -1.5 442,938 + HGI48_RS02005 0.86 -0.4 442,938 + HGI48_RS02005 0.86 -2.2 442,939 - HGI48_RS02005 0.86 -0.2 442,986 + +0.0 442,986 + +0.2 442,986 + -1.2 442,986 + +2.2 442,987 - +0.3 442,987 - -0.8 443,001 + -1.0 443,002 - -0.3 443,002 - +1.7 443,080 + -0.2 443,080 + -2.2 443,081 - -0.6 443,110 - HGI48_RS02010 0.14 -0.6 443,129 + HGI48_RS02010 0.23 +0.2 443,130 - HGI48_RS02010 0.23 -0.9 443,230 + HGI48_RS02010 0.68 -2.6 443,231 - HGI48_RS02010 0.68 -2.2 443,231 - -0.8 443,265 + HGI48_RS02010 0.84 +1.1 443,274 + HGI48_RS02010 0.88 -0.6 443,274 + HGI48_RS02010 0.88 -0.5 443,317 + +0.8 443,318 - -0.5 443,323 - +0.8 443,418 + +2.4 443,418 + HGI48_RS02015 0.13 -0.2 443,419 - HGI48_RS02015 0.13 +0.5 443,421 + HGI48_RS02015 0.13 +1.4 443,428 + HGI48_RS02015 0.14 -1.2 443,498 - HGI48_RS02015 0.22 -2.6 443,546 + HGI48_RS02015 0.28 -0.2 443,557 + HGI48_RS02015 0.29 -1.6 443,557 + HGI48_RS02015 0.29 +0.2 443,557 + HGI48_RS02015 0.29 +0.2 443,558 - HGI48_RS02015 0.29 -2.0 443,558 - HGI48_RS02015 0.29 -0.2 443,566 + HGI48_RS02015 0.30 -0.4 443,566 + HGI48_RS02015 0.30 -0.3 443,567 - HGI48_RS02015 0.30 -0.4 443,567 - HGI48_RS02015 0.30 -0.2 443,647 + HGI48_RS02015 0.39 -0.5 443,648 - HGI48_RS02015 0.39 -0.3 443,650 + HGI48_RS02015 0.39 +1.1 443,779 + HGI48_RS02015 0.54 -1.5 443,780 - HGI48_RS02015 0.54 +0.6 443,813 + HGI48_RS02015 0.58 +0.1 443,887 + HGI48_RS02015 0.66 +1.2 443,887 + HGI48_RS02015 0.66 +0.1 443,887 + +0.8 443,888 - HGI48_RS02015 0.67 +0.2 443,888 - HGI48_RS02015 0.67 -1.5 443,909 - HGI48_RS02015 0.69 +0.1 443,966 - HGI48_RS02015 0.75 -0.9 443,974 + HGI48_RS02015 0.76 +0.2 443,975 - HGI48_RS02015 0.76 -2.3 443,987 - +1.4 444,012 + +1.4 444,012 + HGI48_RS02015 0.81 -2.8 444,012 + HGI48_RS02015 0.81 -0.9 444,013 - HGI48_RS02015 0.81 -1.2 444,013 - HGI48_RS02015 0.81 -1.0 444,013 - HGI48_RS02015 0.81 -1.4 444,013 - HGI48_RS02015 0.81 +1.4 444,013 - HGI48_RS02015 0.81 -0.8 444,013 - HGI48_RS02015 0.81 -0.4 444,023 - +0.8 444,028 + HGI48_RS02015 0.82 -1.2 444,028 + HGI48_RS02015 0.82 -0.8 444,029 - +0.2 444,047 - -0.2 444,124 + -2.4 444,170 + +0.4 444,170 + +1.1 444,171 - -0.8 444,175 + -0.5 444,175 + -1.8 444,176 - +0.2 444,176 - -1.5 444,181 + +1.4
Or see this region's nucleotide sequence