Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS01765

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS01760 and HGI48_RS01765 are separated by 49 nucleotidesHGI48_RS01765 and HGI48_RS01770 overlap by 4 nucleotides HGI48_RS01760: HGI48_RS01760 - LacI family DNA-binding transcriptional regulator, at 388,996 to 390,027 _RS01760 HGI48_RS01765: HGI48_RS01765 - sucrose-6-phosphate hydrolase, at 390,077 to 391,489 _RS01765 HGI48_RS01770: HGI48_RS01770 - PTS sucrose transporter subunit IIBC, at 391,486 to 392,859 _RS01770 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 389.180 kb on + strand, within HGI48_RS01760at 389.180 kb on + strand, within HGI48_RS01760at 389.180 kb on + strand, within HGI48_RS01760at 389.181 kb on - strand, within HGI48_RS01760at 389.181 kb on - strand, within HGI48_RS01760at 389.181 kb on - strand, within HGI48_RS01760at 389.333 kb on + strand, within HGI48_RS01760at 389.351 kb on + strand, within HGI48_RS01760at 389.351 kb on + strand, within HGI48_RS01760at 389.351 kb on + strand, within HGI48_RS01760at 389.351 kb on + strand, within HGI48_RS01760at 389.351 kb on + strand, within HGI48_RS01760at 389.352 kb on - strand, within HGI48_RS01760at 389.352 kb on - strand, within HGI48_RS01760at 389.352 kb on - strandat 389.352 kb on - strand, within HGI48_RS01760at 389.352 kb on - strand, within HGI48_RS01760at 389.352 kb on - strand, within HGI48_RS01760at 389.468 kb on + strandat 389.468 kb on + strand, within HGI48_RS01760at 389.468 kb on + strandat 389.469 kb on - strand, within HGI48_RS01760at 389.469 kb on - strand, within HGI48_RS01760at 389.612 kb on + strand, within HGI48_RS01760at 389.612 kb on + strand, within HGI48_RS01760at 389.626 kb on + strand, within HGI48_RS01760at 389.626 kb on + strand, within HGI48_RS01760at 389.626 kb on + strand, within HGI48_RS01760at 389.790 kb on - strand, within HGI48_RS01760at 389.947 kb on - strandat 389.947 kb on - strandat 390.033 kb on + strandat 390.039 kb on + strandat 390.040 kb on - strandat 390.058 kb on - strandat 390.078 kb on + strandat 390.078 kb on + strandat 390.078 kb on + strandat 390.079 kb on - strandat 390.079 kb on - strandat 390.084 kb on - strandat 390.084 kb on - strandat 390.084 kb on - strandat 390.168 kb on + strandat 390.169 kb on - strandat 390.169 kb on - strandat 390.169 kb on - strandat 390.203 kb on - strandat 390.289 kb on + strand, within HGI48_RS01765at 390.308 kb on + strand, within HGI48_RS01765at 390.309 kb on - strand, within HGI48_RS01765at 390.424 kb on - strand, within HGI48_RS01765at 390.493 kb on - strand, within HGI48_RS01765at 390.538 kb on + strand, within HGI48_RS01765at 390.539 kb on - strandat 390.711 kb on + strand, within HGI48_RS01765at 390.711 kb on + strand, within HGI48_RS01765at 390.732 kb on + strandat 390.733 kb on - strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.800 kb on + strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.801 kb on - strand, within HGI48_RS01765at 390.847 kb on - strand, within HGI48_RS01765at 390.847 kb on - strand, within HGI48_RS01765at 390.947 kb on + strand, within HGI48_RS01765at 390.948 kb on - strand, within HGI48_RS01765at 390.978 kb on + strand, within HGI48_RS01765at 390.978 kb on + strand, within HGI48_RS01765at 390.979 kb on - strand, within HGI48_RS01765at 390.979 kb on - strand, within HGI48_RS01765at 391.016 kb on + strand, within HGI48_RS01765at 391.016 kb on + strandat 391.017 kb on - strand, within HGI48_RS01765at 391.029 kb on + strand, within HGI48_RS01765at 391.104 kb on + strand, within HGI48_RS01765at 391.128 kb on + strand, within HGI48_RS01765at 391.129 kb on - strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strandat 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strandat 391.146 kb on + strand, within HGI48_RS01765at 391.146 kb on + strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strandat 391.147 kb on - strand, within HGI48_RS01765at 391.147 kb on - strand, within HGI48_RS01765at 391.191 kb on + strand, within HGI48_RS01765at 391.345 kb on + strand, within HGI48_RS01765at 391.422 kb on + strandat 391.422 kb on + strandat 391.422 kb on + strandat 391.422 kb on + strandat 391.423 kb on - strandat 391.508 kb on + strandat 391.568 kb on + strandat 391.569 kb on - strandat 391.569 kb on - strandat 391.569 kb on - strandat 391.571 kb on + strandat 391.571 kb on + strandat 391.571 kb on + strandat 391.571 kb on + strandat 391.572 kb on - strandat 391.572 kb on - strandat 391.591 kb on + strandat 391.591 kb on + strandat 391.592 kb on - strandat 391.592 kb on - strandat 391.592 kb on - strandat 391.814 kb on + strandat 391.814 kb on + strand, within HGI48_RS01770at 391.814 kb on + strand, within HGI48_RS01770at 391.814 kb on + strand, within HGI48_RS01770at 391.814 kb on + strand, within HGI48_RS01770at 391.815 kb on - strand, within HGI48_RS01770at 391.815 kb on - strand, within HGI48_RS01770at 391.815 kb on - strand, within HGI48_RS01770at 391.815 kb on - strandat 391.815 kb on - strand, within HGI48_RS01770at 391.816 kb on + strand, within HGI48_RS01770at 391.817 kb on - strand, within HGI48_RS01770at 391.863 kb on + strand, within HGI48_RS01770at 391.863 kb on + strand, within HGI48_RS01770at 391.863 kb on + strand, within HGI48_RS01770at 391.864 kb on - strand, within HGI48_RS01770at 391.918 kb on - strandat 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.936 kb on + strand, within HGI48_RS01770at 391.937 kb on - strand, within HGI48_RS01770at 392.023 kb on + strand, within HGI48_RS01770at 392.024 kb on - strand, within HGI48_RS01770at 392.122 kb on - strand, within HGI48_RS01770at 392.179 kb on + strand, within HGI48_RS01770at 392.409 kb on + strand, within HGI48_RS01770at 392.409 kb on + strand, within HGI48_RS01770at 392.409 kb on + strand, within HGI48_RS01770at 392.410 kb on - strand, within HGI48_RS01770at 392.410 kb on - strand, within HGI48_RS01770

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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389,180 + HGI48_RS01760 0.18 +1.6
389,180 + HGI48_RS01760 0.18 -0.8
389,180 + HGI48_RS01760 0.18 -1.3
389,181 - HGI48_RS01760 0.18 -0.6
389,181 - HGI48_RS01760 0.18 +0.8
389,181 - HGI48_RS01760 0.18 +0.8
389,333 + HGI48_RS01760 0.33 +0.3
389,351 + HGI48_RS01760 0.34 -2.0
389,351 + HGI48_RS01760 0.34 +2.0
389,351 + HGI48_RS01760 0.34 -1.5
389,351 + HGI48_RS01760 0.34 -0.4
389,351 + HGI48_RS01760 0.34 -1.3
389,352 - HGI48_RS01760 0.34 +0.2
389,352 - HGI48_RS01760 0.34 +0.0
389,352 - +1.2
389,352 - HGI48_RS01760 0.34 -3.3
389,352 - HGI48_RS01760 0.34 -1.2
389,352 - HGI48_RS01760 0.34 -0.7
389,468 + +0.8
389,468 + HGI48_RS01760 0.46 -0.6
389,468 + +1.8
389,469 - HGI48_RS01760 0.46 -0.6
389,469 - HGI48_RS01760 0.46 -0.2
389,612 + HGI48_RS01760 0.60 -2.2
389,612 + HGI48_RS01760 0.60 +1.4
389,626 + HGI48_RS01760 0.61 -1.0
389,626 + HGI48_RS01760 0.61 +1.4
389,626 + HGI48_RS01760 0.61 -2.3
389,790 - HGI48_RS01760 0.77 -0.6
389,947 - +1.4
389,947 - +0.8
390,033 + -0.6
390,039 + -1.0
390,040 - -1.8
390,058 - -0.4
390,078 + -0.0
390,078 + -0.6
390,078 + -0.3
390,079 - +0.0
390,079 - -1.2
390,084 - -1.9
390,084 - -2.9
390,084 - +0.8
390,168 + -2.2
390,169 - -2.2
390,169 - -0.3
390,169 - +1.2
390,203 - -0.8
390,289 + HGI48_RS01765 0.15 -0.2
390,308 + HGI48_RS01765 0.16 +0.2
390,309 - HGI48_RS01765 0.16 -0.5
390,424 - HGI48_RS01765 0.25 -1.5
390,493 - HGI48_RS01765 0.29 +0.3
390,538 + HGI48_RS01765 0.33 -0.2
390,539 - +1.2
390,711 + HGI48_RS01765 0.45 -0.5
390,711 + HGI48_RS01765 0.45 -0.5
390,732 + +0.2
390,733 - HGI48_RS01765 0.46 +0.1
390,800 + HGI48_RS01765 0.51 +0.6
390,800 + HGI48_RS01765 0.51 +1.5
390,800 + HGI48_RS01765 0.51 +0.8
390,800 + HGI48_RS01765 0.51 +0.3
390,800 + HGI48_RS01765 0.51 -0.1
390,800 + HGI48_RS01765 0.51 -1.3
390,800 + HGI48_RS01765 0.51 +0.8
390,800 + HGI48_RS01765 0.51 -0.3
390,801 - HGI48_RS01765 0.51 -0.6
390,801 - HGI48_RS01765 0.51 -1.2
390,801 - HGI48_RS01765 0.51 -1.5
390,801 - HGI48_RS01765 0.51 +0.4
390,847 - HGI48_RS01765 0.54 +1.0
390,847 - HGI48_RS01765 0.54 -0.0
390,947 + HGI48_RS01765 0.62 +1.1
390,948 - HGI48_RS01765 0.62 +0.7
390,978 + HGI48_RS01765 0.64 -1.5
390,978 + HGI48_RS01765 0.64 +0.3
390,979 - HGI48_RS01765 0.64 +0.8
390,979 - HGI48_RS01765 0.64 +0.3
391,016 + HGI48_RS01765 0.66 -0.1
391,016 + -0.8
391,017 - HGI48_RS01765 0.67 -0.2
391,029 + HGI48_RS01765 0.67 +0.2
391,104 + HGI48_RS01765 0.73 +0.5
391,128 + HGI48_RS01765 0.74 -1.2
391,129 - HGI48_RS01765 0.74 -0.3
391,146 + HGI48_RS01765 0.76 +0.1
391,146 + HGI48_RS01765 0.76 +0.1
391,146 + HGI48_RS01765 0.76 -0.8
391,146 + HGI48_RS01765 0.76 -0.2
391,146 + HGI48_RS01765 0.76 -1.8
391,146 + +1.2
391,146 + HGI48_RS01765 0.76 -1.5
391,146 + HGI48_RS01765 0.76 -1.5
391,146 + HGI48_RS01765 0.76 +0.4
391,146 + +0.8
391,146 + HGI48_RS01765 0.76 -0.2
391,146 + HGI48_RS01765 0.76 +2.4
391,147 - HGI48_RS01765 0.76 +0.0
391,147 - HGI48_RS01765 0.76 -0.2
391,147 - HGI48_RS01765 0.76 -0.2
391,147 - +0.8
391,147 - HGI48_RS01765 0.76 +1.2
391,147 - HGI48_RS01765 0.76 -0.2
391,191 + HGI48_RS01765 0.79 -1.3
391,345 + HGI48_RS01765 0.90 +0.3
391,422 + -1.3
391,422 + -2.0
391,422 + -0.2
391,422 + +0.8
391,423 - -1.5
391,508 + -2.2
391,568 + +0.8
391,569 - -0.8
391,569 - -0.2
391,569 - +0.6
391,571 + -0.2
391,571 + -0.8
391,571 + +1.8
391,571 + +1.1
391,572 - +0.8
391,572 - -1.8
391,591 + +0.6
391,591 + +1.6
391,592 - -0.2
391,592 - -0.5
391,592 - -1.0
391,814 + +3.0
391,814 + HGI48_RS01770 0.24 -1.0
391,814 + HGI48_RS01770 0.24 +0.1
391,814 + HGI48_RS01770 0.24 -0.5
391,814 + HGI48_RS01770 0.24 -1.8
391,815 - HGI48_RS01770 0.24 -0.2
391,815 - HGI48_RS01770 0.24 +2.0
391,815 - HGI48_RS01770 0.24 -1.0
391,815 - +1.2
391,815 - HGI48_RS01770 0.24 +0.5
391,816 + HGI48_RS01770 0.24 -2.5
391,817 - HGI48_RS01770 0.24 -1.3
391,863 + HGI48_RS01770 0.27 -0.0
391,863 + HGI48_RS01770 0.27 -0.9
391,863 + HGI48_RS01770 0.27 -0.9
391,864 - HGI48_RS01770 0.28 -0.6
391,918 - -0.8
391,936 + HGI48_RS01770 0.33 +0.4
391,936 + HGI48_RS01770 0.33 +1.2
391,936 + HGI48_RS01770 0.33 +0.8
391,936 + HGI48_RS01770 0.33 +0.8
391,936 + HGI48_RS01770 0.33 +0.6
391,937 - HGI48_RS01770 0.33 -0.3
392,023 + HGI48_RS01770 0.39 +0.3
392,024 - HGI48_RS01770 0.39 +0.0
392,122 - HGI48_RS01770 0.46 -1.2
392,179 + HGI48_RS01770 0.50 +0.8
392,409 + HGI48_RS01770 0.67 +0.2
392,409 + HGI48_RS01770 0.67 -1.8
392,409 + HGI48_RS01770 0.67 -1.3
392,410 - HGI48_RS01770 0.67 -2.5
392,410 - HGI48_RS01770 0.67 +0.8

Or see this region's nucleotide sequence