Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00630 and HGI48_RS00635 are separated by 11 nucleotides HGI48_RS00635 and HGI48_RS00640 are separated by 8 nucleotides HGI48_RS00640 and HGI48_RS00645 are separated by 17 nucleotides
HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289
_RS00630
HGI48_RS00635: HGI48_RS00635 - ABC transporter permease subunit, at 150,301 to 151,200
_RS00635
HGI48_RS00640: HGI48_RS00640 - ABC transporter permease subunit, at 151,209 to 152,129
_RS00640
HGI48_RS00645: HGI48_RS00645 - glutathione ABC transporter substrate-binding protein, at 152,147 to 153,703
_RS00645
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 150.302 kb on + strand at 150.447 kb on + strand, within HGI48_RS00635 at 150.448 kb on - strand, within HGI48_RS00635 at 150.448 kb on - strand, within HGI48_RS00635 at 150.517 kb on - strand, within HGI48_RS00635 at 150.517 kb on - strand at 150.542 kb on + strand, within HGI48_RS00635 at 150.542 kb on + strand, within HGI48_RS00635 at 150.542 kb on + strand, within HGI48_RS00635 at 150.543 kb on - strand, within HGI48_RS00635 at 150.576 kb on + strand, within HGI48_RS00635 at 150.576 kb on + strand, within HGI48_RS00635 at 150.576 kb on + strand, within HGI48_RS00635 at 150.577 kb on - strand, within HGI48_RS00635 at 150.577 kb on - strand, within HGI48_RS00635 at 150.577 kb on - strand, within HGI48_RS00635 at 150.632 kb on + strand, within HGI48_RS00635 at 150.633 kb on - strand at 150.787 kb on + strand, within HGI48_RS00635 at 150.787 kb on + strand, within HGI48_RS00635 at 150.787 kb on + strand, within HGI48_RS00635 at 150.787 kb on + strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.831 kb on - strand, within HGI48_RS00635 at 150.831 kb on - strand, within HGI48_RS00635 at 150.834 kb on - strand, within HGI48_RS00635 at 150.871 kb on - strand, within HGI48_RS00635 at 150.899 kb on + strand, within HGI48_RS00635 at 150.900 kb on - strand, within HGI48_RS00635 at 150.900 kb on - strand, within HGI48_RS00635 at 150.920 kb on + strand, within HGI48_RS00635 at 150.920 kb on + strand, within HGI48_RS00635 at 150.921 kb on - strand, within HGI48_RS00635 at 150.924 kb on + strand, within HGI48_RS00635 at 150.925 kb on - strand, within HGI48_RS00635 at 150.925 kb on - strand, within HGI48_RS00635 at 151.111 kb on - strand at 151.210 kb on + strand at 151.215 kb on + strand at 151.215 kb on + strand at 151.266 kb on - strand at 151.341 kb on + strand, within HGI48_RS00640 at 151.341 kb on + strand, within HGI48_RS00640 at 151.341 kb on + strand, within HGI48_RS00640 at 151.341 kb on + strand, within HGI48_RS00640 at 151.341 kb on + strand, within HGI48_RS00640 at 151.342 kb on - strand, within HGI48_RS00640 at 151.342 kb on - strand at 151.342 kb on - strand, within HGI48_RS00640 at 151.520 kb on - strand, within HGI48_RS00640 at 151.520 kb on - strand, within HGI48_RS00640 at 151.557 kb on - strand at 151.610 kb on + strand, within HGI48_RS00640 at 151.610 kb on + strand at 151.610 kb on + strand, within HGI48_RS00640 at 151.610 kb on + strand, within HGI48_RS00640 at 151.611 kb on - strand, within HGI48_RS00640 at 151.611 kb on - strand, within HGI48_RS00640 at 151.611 kb on - strand, within HGI48_RS00640 at 151.631 kb on - strand, within HGI48_RS00640 at 151.844 kb on + strand, within HGI48_RS00640 at 151.844 kb on + strand, within HGI48_RS00640 at 151.845 kb on - strand, within HGI48_RS00640 at 151.845 kb on - strand, within HGI48_RS00640 at 151.845 kb on - strand, within HGI48_RS00640 at 151.889 kb on - strand, within HGI48_RS00640 at 151.889 kb on - strand, within HGI48_RS00640 at 151.889 kb on - strand, within HGI48_RS00640 at 151.936 kb on + strand, within HGI48_RS00640 at 151.937 kb on - strand at 152.052 kb on - strand at 152.118 kb on - strand at 152.118 kb on - strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.119 kb on + strand at 152.120 kb on - strand at 152.120 kb on - strand at 152.120 kb on - strand at 152.120 kb on - strand at 152.120 kb on - strand at 152.120 kb on - strand at 152.149 kb on - strand at 152.149 kb on - strand at 152.196 kb on + strand at 152.197 kb on - strand at 152.197 kb on - strand at 152.221 kb on + strand at 152.275 kb on + strand at 152.275 kb on + strand at 152.275 kb on + strand at 152.276 kb on - strand at 152.276 kb on - strand at 152.312 kb on - strand, within HGI48_RS00645 at 152.370 kb on + strand, within HGI48_RS00645 at 152.370 kb on + strand, within HGI48_RS00645 at 152.370 kb on + strand, within HGI48_RS00645 at 152.370 kb on + strand, within HGI48_RS00645 at 152.370 kb on + strand, within HGI48_RS00645 at 152.371 kb on - strand, within HGI48_RS00645 at 152.371 kb on - strand, within HGI48_RS00645 at 152.371 kb on - strand, within HGI48_RS00645 at 152.371 kb on - strand, within HGI48_RS00645 at 152.371 kb on - strand at 152.373 kb on + strand, within HGI48_RS00645 at 152.373 kb on + strand at 152.373 kb on + strand, within HGI48_RS00645 at 152.374 kb on - strand, within HGI48_RS00645 at 152.374 kb on - strand, within HGI48_RS00645 at 152.374 kb on - strand, within HGI48_RS00645 at 152.385 kb on + strand at 152.385 kb on + strand, within HGI48_RS00645 at 152.386 kb on - strand, within HGI48_RS00645 at 152.469 kb on + strand, within HGI48_RS00645 at 152.469 kb on + strand, within HGI48_RS00645 at 152.469 kb on + strand, within HGI48_RS00645 at 152.469 kb on + strand, within HGI48_RS00645 at 152.472 kb on + strand, within HGI48_RS00645 at 152.472 kb on + strand, within HGI48_RS00645 at 152.472 kb on + strand at 152.472 kb on + strand, within HGI48_RS00645 at 152.472 kb on + strand, within HGI48_RS00645 at 152.473 kb on - strand, within HGI48_RS00645 at 152.473 kb on - strand, within HGI48_RS00645 at 152.473 kb on - strand, within HGI48_RS00645 at 152.473 kb on - strand, within HGI48_RS00645 at 152.473 kb on - strand, within HGI48_RS00645 at 152.700 kb on + strand, within HGI48_RS00645 at 152.700 kb on + strand, within HGI48_RS00645 at 152.700 kb on + strand, within HGI48_RS00645 at 152.700 kb on + strand, within HGI48_RS00645 at 152.700 kb on + strand, within HGI48_RS00645 at 152.701 kb on - strand, within HGI48_RS00645 at 152.701 kb on - strand, within HGI48_RS00645 at 152.701 kb on - strand, within HGI48_RS00645 at 152.701 kb on - strand at 152.701 kb on - strand, within HGI48_RS00645 at 152.701 kb on - strand, within HGI48_RS00645 at 152.701 kb on - strand, within HGI48_RS00645 at 152.706 kb on + strand, within HGI48_RS00645 at 152.706 kb on + strand, within HGI48_RS00645 at 152.706 kb on + strand, within HGI48_RS00645 at 152.706 kb on + strand, within HGI48_RS00645 at 152.706 kb on + strand, within HGI48_RS00645 at 152.707 kb on - strand, within HGI48_RS00645 at 152.707 kb on - strand, within HGI48_RS00645 at 152.707 kb on - strand, within HGI48_RS00645 at 152.707 kb on - strand, within HGI48_RS00645 at 152.820 kb on + strand at 152.820 kb on + strand at 152.820 kb on + strand, within HGI48_RS00645 at 152.820 kb on + strand, within HGI48_RS00645 at 152.821 kb on - strand, within HGI48_RS00645 at 152.821 kb on - strand, within HGI48_RS00645 at 152.883 kb on + strand, within HGI48_RS00645 at 152.883 kb on + strand, within HGI48_RS00645 at 152.883 kb on + strand at 152.883 kb on + strand, within HGI48_RS00645 at 152.883 kb on + strand, within HGI48_RS00645 at 152.883 kb on + strand, within HGI48_RS00645 at 152.883 kb on + strand, within HGI48_RS00645 at 152.883 kb on + strand, within HGI48_RS00645 at 152.884 kb on - strand at 152.884 kb on - strand, within HGI48_RS00645 at 152.884 kb on - strand, within HGI48_RS00645 at 152.884 kb on - strand, within HGI48_RS00645 at 152.886 kb on + strand, within HGI48_RS00645 at 152.886 kb on + strand, within HGI48_RS00645 at 152.886 kb on + strand, within HGI48_RS00645 at 152.887 kb on - strand, within HGI48_RS00645 at 152.887 kb on - strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.892 kb on + strand, within HGI48_RS00645 at 152.893 kb on - strand, within HGI48_RS00645 at 152.893 kb on - strand, within HGI48_RS00645 at 152.893 kb on - strand, within HGI48_RS00645 at 152.893 kb on - strand, within HGI48_RS00645 at 152.893 kb on - strand, within HGI48_RS00645 at 152.893 kb on - strand, within HGI48_RS00645 at 152.945 kb on + strand, within HGI48_RS00645 at 152.967 kb on + strand, within HGI48_RS00645 at 152.968 kb on - strand, within HGI48_RS00645 at 152.972 kb on - strand, within HGI48_RS00645 at 153.030 kb on + strand, within HGI48_RS00645 at 153.030 kb on + strand, within HGI48_RS00645 at 153.030 kb on + strand, within HGI48_RS00645 at 153.031 kb on - strand, within HGI48_RS00645 at 153.039 kb on - strand, within HGI48_RS00645 at 153.039 kb on - strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.072 kb on + strand, within HGI48_RS00645 at 153.073 kb on - strand, within HGI48_RS00645 at 153.073 kb on - strand, within HGI48_RS00645 at 153.073 kb on - strand, within HGI48_RS00645 at 153.081 kb on + strand, within HGI48_RS00645 at 153.082 kb on - strand at 153.082 kb on - strand, within HGI48_RS00645 at 153.104 kb on - strand, within HGI48_RS00645
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 150,302 + -2.0 150,447 + HGI48_RS00635 0.16 -0.7 150,448 - HGI48_RS00635 0.16 -0.5 150,448 - HGI48_RS00635 0.16 -0.5 150,517 - HGI48_RS00635 0.24 +0.4 150,517 - -0.7 150,542 + HGI48_RS00635 0.27 -0.7 150,542 + HGI48_RS00635 0.27 +0.4 150,542 + HGI48_RS00635 0.27 -0.0 150,543 - HGI48_RS00635 0.27 -1.1 150,576 + HGI48_RS00635 0.31 +0.5 150,576 + HGI48_RS00635 0.31 +1.6 150,576 + HGI48_RS00635 0.31 -0.9 150,577 - HGI48_RS00635 0.31 -2.9 150,577 - HGI48_RS00635 0.31 -1.5 150,577 - HGI48_RS00635 0.31 +1.7 150,632 + HGI48_RS00635 0.37 -0.7 150,633 - +0.3 150,787 + HGI48_RS00635 0.54 -0.4 150,787 + HGI48_RS00635 0.54 +1.1 150,787 + HGI48_RS00635 0.54 -1.7 150,787 + HGI48_RS00635 0.54 +0.1 150,788 - HGI48_RS00635 0.54 -0.1 150,788 - HGI48_RS00635 0.54 +1.2 150,788 - HGI48_RS00635 0.54 -0.1 150,788 - HGI48_RS00635 0.54 -2.5 150,788 - HGI48_RS00635 0.54 -1.1 150,831 - HGI48_RS00635 0.59 +0.3 150,831 - HGI48_RS00635 0.59 +0.9 150,834 - HGI48_RS00635 0.59 +0.7 150,871 - HGI48_RS00635 0.63 +0.3 150,899 + HGI48_RS00635 0.66 -1.2 150,900 - HGI48_RS00635 0.67 -1.0 150,900 - HGI48_RS00635 0.67 -0.7 150,920 + HGI48_RS00635 0.69 +0.7 150,920 + HGI48_RS00635 0.69 +0.4 150,921 - HGI48_RS00635 0.69 +0.2 150,924 + HGI48_RS00635 0.69 +0.5 150,925 - HGI48_RS00635 0.69 +1.2 150,925 - HGI48_RS00635 0.69 +0.4 151,111 - -0.5 151,210 + -1.1 151,215 + -1.5 151,215 + -0.1 151,266 - -2.1 151,341 + HGI48_RS00640 0.14 +1.1 151,341 + HGI48_RS00640 0.14 -1.3 151,341 + HGI48_RS00640 0.14 +0.3 151,341 + HGI48_RS00640 0.14 +0.9 151,341 + HGI48_RS00640 0.14 -0.6 151,342 - HGI48_RS00640 0.14 +0.0 151,342 - +2.9 151,342 - HGI48_RS00640 0.14 -1.1 151,520 - HGI48_RS00640 0.34 +0.3 151,520 - HGI48_RS00640 0.34 +0.5 151,557 - +0.3 151,610 + HGI48_RS00640 0.44 -2.1 151,610 + +1.3 151,610 + HGI48_RS00640 0.44 -0.0 151,610 + HGI48_RS00640 0.44 +0.4 151,611 - HGI48_RS00640 0.44 +1.7 151,611 - HGI48_RS00640 0.44 -1.3 151,611 - HGI48_RS00640 0.44 -2.3 151,631 - HGI48_RS00640 0.46 -0.4 151,844 + HGI48_RS00640 0.69 +0.4 151,844 + HGI48_RS00640 0.69 +0.1 151,845 - HGI48_RS00640 0.69 +2.9 151,845 - HGI48_RS00640 0.69 +0.9 151,845 - HGI48_RS00640 0.69 -0.7 151,889 - HGI48_RS00640 0.74 -0.1 151,889 - HGI48_RS00640 0.74 +1.6 151,889 - HGI48_RS00640 0.74 -1.7 151,936 + HGI48_RS00640 0.79 -2.1 151,937 - +0.9 152,052 - +0.6 152,118 - +1.4 152,118 - +0.7 152,119 + -0.4 152,119 + +0.4 152,119 + -0.3 152,119 + -0.1 152,119 + -1.7 152,119 + -1.3 152,119 + +0.9 152,119 + +0.3 152,119 + -2.3 152,119 + -0.1 152,119 + +0.4 152,119 + +0.2 152,119 + +0.9 152,120 - -1.3 152,120 - -1.3 152,120 - +0.6 152,120 - +0.2 152,120 - -3.1 152,120 - +0.9 152,149 - +2.1 152,149 - +1.1 152,196 + +0.9 152,197 - -0.8 152,197 - -0.1 152,221 + -0.1 152,275 + +0.4 152,275 + +0.3 152,275 + +0.5 152,276 - -1.1 152,276 - -0.7 152,312 - HGI48_RS00645 0.11 -2.1 152,370 + HGI48_RS00645 0.14 -1.5 152,370 + HGI48_RS00645 0.14 +0.9 152,370 + HGI48_RS00645 0.14 +0.9 152,370 + HGI48_RS00645 0.14 -0.4 152,370 + HGI48_RS00645 0.14 -1.4 152,371 - HGI48_RS00645 0.14 +0.9 152,371 - HGI48_RS00645 0.14 -1.4 152,371 - HGI48_RS00645 0.14 +0.6 152,371 - HGI48_RS00645 0.14 +0.1 152,371 - +2.7 152,373 + HGI48_RS00645 0.15 +0.1 152,373 + -0.1 152,373 + HGI48_RS00645 0.15 +0.4 152,374 - HGI48_RS00645 0.15 -1.1 152,374 - HGI48_RS00645 0.15 +0.4 152,374 - HGI48_RS00645 0.15 +0.3 152,385 + +1.9 152,385 + HGI48_RS00645 0.15 +2.0 152,386 - HGI48_RS00645 0.15 +0.4 152,469 + HGI48_RS00645 0.21 +1.3 152,469 + HGI48_RS00645 0.21 +0.6 152,469 + HGI48_RS00645 0.21 -0.3 152,469 + HGI48_RS00645 0.21 -3.0 152,472 + HGI48_RS00645 0.21 -1.5 152,472 + HGI48_RS00645 0.21 -1.1 152,472 + +1.3 152,472 + HGI48_RS00645 0.21 +0.4 152,472 + HGI48_RS00645 0.21 +1.3 152,473 - HGI48_RS00645 0.21 +0.1 152,473 - HGI48_RS00645 0.21 -0.1 152,473 - HGI48_RS00645 0.21 -2.2 152,473 - HGI48_RS00645 0.21 -0.9 152,473 - HGI48_RS00645 0.21 +1.9 152,700 + HGI48_RS00645 0.36 -1.1 152,700 + HGI48_RS00645 0.36 -1.7 152,700 + HGI48_RS00645 0.36 +0.4 152,700 + HGI48_RS00645 0.36 -0.1 152,700 + HGI48_RS00645 0.36 -0.5 152,701 - HGI48_RS00645 0.36 -0.4 152,701 - HGI48_RS00645 0.36 +1.4 152,701 - HGI48_RS00645 0.36 +0.2 152,701 - -0.1 152,701 - HGI48_RS00645 0.36 +0.4 152,701 - HGI48_RS00645 0.36 -0.4 152,701 - HGI48_RS00645 0.36 -0.6 152,706 + HGI48_RS00645 0.36 +1.3 152,706 + HGI48_RS00645 0.36 +0.4 152,706 + HGI48_RS00645 0.36 -0.5 152,706 + HGI48_RS00645 0.36 -0.3 152,706 + HGI48_RS00645 0.36 -0.4 152,707 - HGI48_RS00645 0.36 -2.3 152,707 - HGI48_RS00645 0.36 -1.8 152,707 - HGI48_RS00645 0.36 -1.1 152,707 - HGI48_RS00645 0.36 -1.7 152,820 + +0.9 152,820 + +1.9 152,820 + HGI48_RS00645 0.43 -1.5 152,820 + HGI48_RS00645 0.43 +0.7 152,821 - HGI48_RS00645 0.43 -2.5 152,821 - HGI48_RS00645 0.43 -0.7 152,883 + HGI48_RS00645 0.47 -1.5 152,883 + HGI48_RS00645 0.47 -1.5 152,883 + +1.9 152,883 + HGI48_RS00645 0.47 +0.6 152,883 + HGI48_RS00645 0.47 +1.7 152,883 + HGI48_RS00645 0.47 +0.4 152,883 + HGI48_RS00645 0.47 -2.7 152,883 + HGI48_RS00645 0.47 +0.9 152,884 - +0.9 152,884 - HGI48_RS00645 0.47 -0.0 152,884 - HGI48_RS00645 0.47 -2.3 152,884 - HGI48_RS00645 0.47 -1.8 152,886 + HGI48_RS00645 0.47 -0.3 152,886 + HGI48_RS00645 0.47 -1.1 152,886 + HGI48_RS00645 0.47 -0.5 152,887 - HGI48_RS00645 0.48 +0.7 152,887 - HGI48_RS00645 0.48 -0.7 152,892 + HGI48_RS00645 0.48 -1.3 152,892 + HGI48_RS00645 0.48 +0.3 152,892 + HGI48_RS00645 0.48 +0.1 152,892 + HGI48_RS00645 0.48 -0.9 152,892 + HGI48_RS00645 0.48 -0.9 152,892 + HGI48_RS00645 0.48 +0.7 152,892 + HGI48_RS00645 0.48 -1.5 152,893 - HGI48_RS00645 0.48 +0.9 152,893 - HGI48_RS00645 0.48 -0.0 152,893 - HGI48_RS00645 0.48 -0.7 152,893 - HGI48_RS00645 0.48 -2.3 152,893 - HGI48_RS00645 0.48 -0.1 152,893 - HGI48_RS00645 0.48 -0.5 152,945 + HGI48_RS00645 0.51 -0.3 152,967 + HGI48_RS00645 0.53 +0.1 152,968 - HGI48_RS00645 0.53 -0.6 152,972 - HGI48_RS00645 0.53 +1.5 153,030 + HGI48_RS00645 0.57 -0.0 153,030 + HGI48_RS00645 0.57 +1.1 153,030 + HGI48_RS00645 0.57 +0.4 153,031 - HGI48_RS00645 0.57 +1.9 153,039 - HGI48_RS00645 0.57 -1.5 153,039 - HGI48_RS00645 0.57 -0.1 153,072 + HGI48_RS00645 0.59 +1.7 153,072 + HGI48_RS00645 0.59 -1.5 153,072 + HGI48_RS00645 0.59 +1.1 153,072 + HGI48_RS00645 0.59 +0.3 153,073 - HGI48_RS00645 0.59 -0.4 153,073 - HGI48_RS00645 0.59 +0.1 153,073 - HGI48_RS00645 0.59 +0.4 153,081 + HGI48_RS00645 0.60 +2.0 153,082 - -0.7 153,082 - HGI48_RS00645 0.60 -0.1 153,104 - HGI48_RS00645 0.61 +0.8
Or see this region's nucleotide sequence