Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00560

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00555 and HGI48_RS00560 overlap by 1 nucleotidesHGI48_RS00560 and HGI48_RS00565 overlap by 4 nucleotidesHGI48_RS00565 and HGI48_RS00570 are separated by 0 nucleotides HGI48_RS00555: HGI48_RS00555 - ABC transporter substrate-binding protein, at 132,718 to 134,313 _RS00555 HGI48_RS00560: HGI48_RS00560 - ABC transporter permease, at 134,313 to 135,323 _RS00560 HGI48_RS00565: HGI48_RS00565 - ABC transporter permease, at 135,320 to 136,222 _RS00565 HGI48_RS00570: HGI48_RS00570 - ABC transporter ATP-binding protein, at 136,223 to 137,053 _RS00570 Position (kb) 134 135 136Strain fitness (log2 ratio) -2 -1 0 1 2at 133.356 kb on - strand, within HGI48_RS00555at 133.423 kb on - strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.660 kb on + strandat 133.837 kb on + strand, within HGI48_RS00555at 133.838 kb on - strand, within HGI48_RS00555at 133.997 kb on - strand, within HGI48_RS00555at 134.164 kb on + strandat 134.165 kb on - strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.321 kb on - strandat 134.321 kb on - strandat 134.339 kb on + strandat 134.598 kb on + strand, within HGI48_RS00560at 134.895 kb on + strand, within HGI48_RS00560at 134.896 kb on - strand, within HGI48_RS00560at 134.952 kb on + strand, within HGI48_RS00560at 134.952 kb on + strand, within HGI48_RS00560at 134.953 kb on - strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strandat 134.968 kb on - strand, within HGI48_RS00560at 134.988 kb on - strand, within HGI48_RS00560at 135.123 kb on + strandat 135.124 kb on - strand, within HGI48_RS00560at 135.189 kb on + strand, within HGI48_RS00560at 135.189 kb on + strand, within HGI48_RS00560at 135.190 kb on - strand, within HGI48_RS00560at 135.197 kb on + strand, within HGI48_RS00560at 135.239 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.262 kb on - strandat 135.262 kb on - strandat 135.294 kb on + strandat 135.295 kb on - strandat 135.317 kb on - strandat 135.317 kb on - strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.329 kb on + strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.330 kb on - strandat 135.609 kb on - strand, within HGI48_RS00565at 135.619 kb on + strand, within HGI48_RS00565at 135.619 kb on + strand, within HGI48_RS00565at 135.620 kb on - strand, within HGI48_RS00565at 135.620 kb on - strand, within HGI48_RS00565at 135.620 kb on - strand, within HGI48_RS00565at 135.622 kb on + strand, within HGI48_RS00565at 135.623 kb on - strand, within HGI48_RS00565at 135.623 kb on - strand, within HGI48_RS00565at 135.623 kb on - strand, within HGI48_RS00565at 135.715 kb on + strandat 135.848 kb on + strand, within HGI48_RS00565at 135.898 kb on + strand, within HGI48_RS00565at 136.157 kb on - strandat 136.157 kb on - strandat 136.220 kb on + strandat 136.220 kb on + strandat 136.220 kb on + strandat 136.221 kb on - strandat 136.221 kb on - strandat 136.221 kb on - strandat 136.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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133,356 - HGI48_RS00555 0.40 -0.5
133,423 - HGI48_RS00555 0.44 +0.4
133,549 + HGI48_RS00555 0.52 -1.5
133,549 + HGI48_RS00555 0.52 -0.3
133,549 + HGI48_RS00555 0.52 -0.7
133,549 + HGI48_RS00555 0.52 +0.6
133,550 - HGI48_RS00555 0.52 +0.2
133,550 - HGI48_RS00555 0.52 +0.0
133,550 - HGI48_RS00555 0.52 +0.1
133,550 - HGI48_RS00555 0.52 +0.4
133,550 - HGI48_RS00555 0.52 +2.0
133,660 + -0.1
133,837 + HGI48_RS00555 0.70 -0.1
133,838 - HGI48_RS00555 0.70 -1.0
133,997 - HGI48_RS00555 0.80 -0.8
134,164 + +0.1
134,165 - +0.4
134,320 + -0.5
134,320 + +0.1
134,320 + -0.0
134,320 + -1.4
134,321 - -0.5
134,321 - -0.3
134,339 + +0.1
134,598 + HGI48_RS00560 0.28 -2.0
134,895 + HGI48_RS00560 0.58 +0.3
134,896 - HGI48_RS00560 0.58 -1.6
134,952 + HGI48_RS00560 0.63 +0.2
134,952 + HGI48_RS00560 0.63 +0.3
134,953 - HGI48_RS00560 0.63 -0.0
134,967 + HGI48_RS00560 0.65 -1.3
134,967 + HGI48_RS00560 0.65 +0.1
134,967 + HGI48_RS00560 0.65 -2.1
134,967 + HGI48_RS00560 0.65 +0.1
134,967 + HGI48_RS00560 0.65 +0.5
134,967 + HGI48_RS00560 0.65 +1.8
134,967 + HGI48_RS00560 0.65 -2.6
134,968 - HGI48_RS00560 0.65 -0.1
134,968 - HGI48_RS00560 0.65 +0.9
134,968 - HGI48_RS00560 0.65 -1.7
134,968 - HGI48_RS00560 0.65 -0.7
134,968 - +1.4
134,968 - HGI48_RS00560 0.65 -0.4
134,988 - HGI48_RS00560 0.67 +0.3
135,123 + +2.4
135,124 - HGI48_RS00560 0.80 -1.5
135,189 + HGI48_RS00560 0.87 +0.4
135,189 + HGI48_RS00560 0.87 -0.6
135,190 - HGI48_RS00560 0.87 -0.3
135,197 + HGI48_RS00560 0.87 +0.3
135,239 + -1.3
135,261 + -0.4
135,261 + +1.4
135,261 + -0.6
135,261 + +0.9
135,262 - -2.1
135,262 - +0.9
135,294 + +0.1
135,295 - +0.1
135,317 - +1.5
135,317 - -1.1
135,329 + +1.1
135,329 + +0.4
135,329 + +0.1
135,329 + -2.1
135,329 + -2.1
135,329 + -0.6
135,329 + +0.3
135,330 - +0.9
135,330 - +1.2
135,330 - +1.2
135,330 - -0.6
135,330 - +0.9
135,609 - HGI48_RS00565 0.32 +0.9
135,619 + HGI48_RS00565 0.33 -0.5
135,619 + HGI48_RS00565 0.33 +0.4
135,620 - HGI48_RS00565 0.33 +1.4
135,620 - HGI48_RS00565 0.33 -0.5
135,620 - HGI48_RS00565 0.33 -0.9
135,622 + HGI48_RS00565 0.33 +0.6
135,623 - HGI48_RS00565 0.34 -0.7
135,623 - HGI48_RS00565 0.34 +0.5
135,623 - HGI48_RS00565 0.34 -1.1
135,715 + +1.6
135,848 + HGI48_RS00565 0.58 +0.1
135,898 + HGI48_RS00565 0.64 -1.0
136,157 - +0.4
136,157 - -0.0
136,220 + +1.6
136,220 + -0.5
136,220 + +0.9
136,221 - -1.1
136,221 - -1.5
136,221 - +0.2
136,221 - -0.4

Or see this region's nucleotide sequence