Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00555

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00550 and HGI48_RS00555 are separated by 200 nucleotidesHGI48_RS00555 and HGI48_RS00560 overlap by 1 nucleotides HGI48_RS00550: HGI48_RS00550 - dipeptidase, at 131,435 to 132,517 _RS00550 HGI48_RS00555: HGI48_RS00555 - ABC transporter substrate-binding protein, at 132,718 to 134,313 _RS00555 HGI48_RS00560: HGI48_RS00560 - ABC transporter permease, at 134,313 to 135,323 _RS00560 Position (kb) 132 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2at 131.999 kb on - strand, within HGI48_RS00550at 132.046 kb on - strand, within HGI48_RS00550at 132.046 kb on - strand, within HGI48_RS00550at 132.053 kb on - strand, within HGI48_RS00550at 132.312 kb on + strand, within HGI48_RS00550at 132.312 kb on + strand, within HGI48_RS00550at 132.312 kb on + strand, within HGI48_RS00550at 132.527 kb on - strandat 132.540 kb on - strandat 132.633 kb on - strandat 132.783 kb on + strandat 132.840 kb on + strandat 132.840 kb on + strandat 132.840 kb on + strandat 132.841 kb on - strandat 132.907 kb on + strandat 133.134 kb on + strand, within HGI48_RS00555at 133.161 kb on + strand, within HGI48_RS00555at 133.190 kb on + strand, within HGI48_RS00555at 133.191 kb on - strand, within HGI48_RS00555at 133.191 kb on - strand, within HGI48_RS00555at 133.228 kb on + strand, within HGI48_RS00555at 133.229 kb on - strand, within HGI48_RS00555at 133.356 kb on - strand, within HGI48_RS00555at 133.423 kb on - strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.549 kb on + strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.550 kb on - strand, within HGI48_RS00555at 133.660 kb on + strandat 133.837 kb on + strand, within HGI48_RS00555at 133.838 kb on - strand, within HGI48_RS00555at 133.997 kb on - strand, within HGI48_RS00555at 134.164 kb on + strandat 134.165 kb on - strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.320 kb on + strandat 134.321 kb on - strandat 134.321 kb on - strandat 134.339 kb on + strandat 134.598 kb on + strand, within HGI48_RS00560at 134.895 kb on + strand, within HGI48_RS00560at 134.896 kb on - strand, within HGI48_RS00560at 134.952 kb on + strand, within HGI48_RS00560at 134.952 kb on + strand, within HGI48_RS00560at 134.953 kb on - strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.967 kb on + strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strand, within HGI48_RS00560at 134.968 kb on - strandat 134.968 kb on - strand, within HGI48_RS00560at 134.988 kb on - strand, within HGI48_RS00560at 135.123 kb on + strandat 135.124 kb on - strand, within HGI48_RS00560at 135.189 kb on + strand, within HGI48_RS00560at 135.189 kb on + strand, within HGI48_RS00560at 135.190 kb on - strand, within HGI48_RS00560at 135.197 kb on + strand, within HGI48_RS00560at 135.239 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.261 kb on + strandat 135.262 kb on - strandat 135.262 kb on - strandat 135.294 kb on + strandat 135.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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131,999 - HGI48_RS00550 0.52 -0.3
132,046 - HGI48_RS00550 0.56 -1.0
132,046 - HGI48_RS00550 0.56 -0.5
132,053 - HGI48_RS00550 0.57 +1.1
132,312 + HGI48_RS00550 0.81 -2.1
132,312 + HGI48_RS00550 0.81 -1.1
132,312 + HGI48_RS00550 0.81 +0.9
132,527 - -1.1
132,540 - -0.7
132,633 - +0.9
132,783 + -0.9
132,840 + +1.1
132,840 + +0.1
132,840 + -2.6
132,841 - +0.2
132,907 + -0.7
133,134 + HGI48_RS00555 0.26 +0.7
133,161 + HGI48_RS00555 0.28 -0.9
133,190 + HGI48_RS00555 0.30 -1.7
133,191 - HGI48_RS00555 0.30 -0.1
133,191 - HGI48_RS00555 0.30 +1.0
133,228 + HGI48_RS00555 0.32 -1.0
133,229 - HGI48_RS00555 0.32 -0.6
133,356 - HGI48_RS00555 0.40 -0.5
133,423 - HGI48_RS00555 0.44 +0.4
133,549 + HGI48_RS00555 0.52 -1.5
133,549 + HGI48_RS00555 0.52 -0.3
133,549 + HGI48_RS00555 0.52 -0.7
133,549 + HGI48_RS00555 0.52 +0.6
133,550 - HGI48_RS00555 0.52 +0.2
133,550 - HGI48_RS00555 0.52 +0.0
133,550 - HGI48_RS00555 0.52 +0.1
133,550 - HGI48_RS00555 0.52 +0.4
133,550 - HGI48_RS00555 0.52 +2.0
133,660 + -0.1
133,837 + HGI48_RS00555 0.70 -0.1
133,838 - HGI48_RS00555 0.70 -1.0
133,997 - HGI48_RS00555 0.80 -0.8
134,164 + +0.1
134,165 - +0.4
134,320 + -0.5
134,320 + +0.1
134,320 + -0.0
134,320 + -1.4
134,321 - -0.5
134,321 - -0.3
134,339 + +0.1
134,598 + HGI48_RS00560 0.28 -2.0
134,895 + HGI48_RS00560 0.58 +0.3
134,896 - HGI48_RS00560 0.58 -1.6
134,952 + HGI48_RS00560 0.63 +0.2
134,952 + HGI48_RS00560 0.63 +0.3
134,953 - HGI48_RS00560 0.63 -0.0
134,967 + HGI48_RS00560 0.65 -1.3
134,967 + HGI48_RS00560 0.65 +0.1
134,967 + HGI48_RS00560 0.65 -2.1
134,967 + HGI48_RS00560 0.65 +0.1
134,967 + HGI48_RS00560 0.65 +0.5
134,967 + HGI48_RS00560 0.65 +1.8
134,967 + HGI48_RS00560 0.65 -2.6
134,968 - HGI48_RS00560 0.65 -0.1
134,968 - HGI48_RS00560 0.65 +0.9
134,968 - HGI48_RS00560 0.65 -1.7
134,968 - HGI48_RS00560 0.65 -0.7
134,968 - +1.4
134,968 - HGI48_RS00560 0.65 -0.4
134,988 - HGI48_RS00560 0.67 +0.3
135,123 + +2.4
135,124 - HGI48_RS00560 0.80 -1.5
135,189 + HGI48_RS00560 0.87 +0.4
135,189 + HGI48_RS00560 0.87 -0.6
135,190 - HGI48_RS00560 0.87 -0.3
135,197 + HGI48_RS00560 0.87 +0.3
135,239 + -1.3
135,261 + -0.4
135,261 + +1.4
135,261 + -0.6
135,261 + +0.9
135,262 - -2.1
135,262 - +0.9
135,294 + +0.1
135,295 - +0.1

Or see this region's nucleotide sequence