Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00475

Experiment: PDB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00470 and HGI48_RS00475 overlap by 4 nucleotidesHGI48_RS00475 and HGI48_RS00480 are separated by 97 nucleotides HGI48_RS00470: HGI48_RS00470 - acyl-CoA dehydrogenase, at 116,485 to 117,618 _RS00470 HGI48_RS00475: HGI48_RS00475 - VOC family protein, at 117,615 to 118,046 _RS00475 HGI48_RS00480: HGI48_RS00480 - AMP-binding protein, at 118,144 to 119,667 _RS00480 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 117.094 kb on + strand, within HGI48_RS00470at 117.095 kb on - strand, within HGI48_RS00470at 117.131 kb on + strandat 117.131 kb on + strand, within HGI48_RS00470at 117.132 kb on - strand, within HGI48_RS00470at 117.132 kb on - strand, within HGI48_RS00470at 117.132 kb on - strandat 117.132 kb on - strandat 117.360 kb on - strand, within HGI48_RS00470at 117.360 kb on - strand, within HGI48_RS00470at 117.360 kb on - strand, within HGI48_RS00470at 117.375 kb on - strand, within HGI48_RS00470at 117.471 kb on + strand, within HGI48_RS00470at 117.494 kb on + strand, within HGI48_RS00470at 117.494 kb on + strand, within HGI48_RS00470at 117.609 kb on - strandat 117.609 kb on - strandat 117.647 kb on + strandat 117.688 kb on + strand, within HGI48_RS00475at 117.689 kb on - strand, within HGI48_RS00475at 117.772 kb on + strand, within HGI48_RS00475at 117.806 kb on + strand, within HGI48_RS00475at 117.807 kb on - strand, within HGI48_RS00475at 117.807 kb on - strandat 117.928 kb on + strand, within HGI48_RS00475at 117.960 kb on + strand, within HGI48_RS00475at 117.960 kb on + strand, within HGI48_RS00475at 117.961 kb on - strand, within HGI48_RS00475at 117.961 kb on - strandat 117.961 kb on - strand, within HGI48_RS00475at 118.011 kb on - strandat 118.025 kb on - strandat 118.104 kb on + strandat 118.105 kb on - strandat 118.130 kb on - strandat 118.130 kb on - strandat 118.145 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.262 kb on + strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.263 kb on - strandat 118.270 kb on + strandat 118.270 kb on + strandat 118.271 kb on - strandat 118.340 kb on - strand, within HGI48_RS00480at 118.340 kb on - strand, within HGI48_RS00480at 118.340 kb on - strand, within HGI48_RS00480at 118.340 kb on - strand, within HGI48_RS00480at 118.340 kb on - strand, within HGI48_RS00480at 118.375 kb on + strand, within HGI48_RS00480at 118.397 kb on - strand, within HGI48_RS00480at 118.461 kb on + strand, within HGI48_RS00480at 118.461 kb on + strand, within HGI48_RS00480at 118.462 kb on - strand, within HGI48_RS00480at 118.535 kb on + strand, within HGI48_RS00480at 118.538 kb on + strand, within HGI48_RS00480at 118.538 kb on + strand, within HGI48_RS00480at 118.539 kb on - strand, within HGI48_RS00480at 118.591 kb on + strand, within HGI48_RS00480at 118.591 kb on + strand, within HGI48_RS00480at 118.591 kb on + strand, within HGI48_RS00480at 118.591 kb on + strand, within HGI48_RS00480at 118.591 kb on + strand, within HGI48_RS00480at 118.592 kb on - strand, within HGI48_RS00480at 118.592 kb on - strand, within HGI48_RS00480at 118.592 kb on - strand, within HGI48_RS00480at 118.592 kb on - strand, within HGI48_RS00480at 118.596 kb on - strand, within HGI48_RS00480at 118.709 kb on - strand, within HGI48_RS00480at 118.709 kb on - strand, within HGI48_RS00480at 118.724 kb on - strand, within HGI48_RS00480at 118.724 kb on - strandat 118.724 kb on - strand, within HGI48_RS00480at 118.724 kb on - strandat 118.751 kb on - strand, within HGI48_RS00480at 118.793 kb on + strandat 118.794 kb on - strand, within HGI48_RS00480at 118.794 kb on - strand, within HGI48_RS00480at 118.794 kb on - strand, within HGI48_RS00480at 118.794 kb on - strand, within HGI48_RS00480at 118.885 kb on + strand, within HGI48_RS00480at 118.886 kb on - strand, within HGI48_RS00480at 118.886 kb on - strand, within HGI48_RS00480at 118.929 kb on + strand, within HGI48_RS00480at 118.929 kb on + strand, within HGI48_RS00480at 118.929 kb on + strandat 118.929 kb on + strand, within HGI48_RS00480at 118.929 kb on + strand, within HGI48_RS00480at 118.929 kb on + strand, within HGI48_RS00480at 118.929 kb on + strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strandat 118.930 kb on - strandat 118.930 kb on - strandat 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.930 kb on - strand, within HGI48_RS00480at 118.950 kb on + strand, within HGI48_RS00480at 119.016 kb on + strand, within HGI48_RS00480at 119.017 kb on - strand, within HGI48_RS00480at 119.019 kb on + strandat 119.020 kb on - strand, within HGI48_RS00480at 119.020 kb on - strand, within HGI48_RS00480at 119.020 kb on - strand, within HGI48_RS00480at 119.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PDB
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117,094 + HGI48_RS00470 0.54 -0.9
117,095 - HGI48_RS00470 0.54 +1.2
117,131 + -0.7
117,131 + HGI48_RS00470 0.57 +0.7
117,132 - HGI48_RS00470 0.57 +0.8
117,132 - HGI48_RS00470 0.57 -1.5
117,132 - +0.9
117,132 - +0.9
117,360 - HGI48_RS00470 0.77 +0.1
117,360 - HGI48_RS00470 0.77 +1.0
117,360 - HGI48_RS00470 0.77 +2.3
117,375 - HGI48_RS00470 0.78 -1.1
117,471 + HGI48_RS00470 0.87 -1.9
117,494 + HGI48_RS00470 0.89 +0.9
117,494 + HGI48_RS00470 0.89 +0.6
117,609 - +0.1
117,609 - +0.6
117,647 + -0.1
117,688 + HGI48_RS00475 0.17 +0.6
117,689 - HGI48_RS00475 0.17 -2.1
117,772 + HGI48_RS00475 0.36 +0.8
117,806 + HGI48_RS00475 0.44 +0.3
117,807 - HGI48_RS00475 0.44 +0.9
117,807 - -0.7
117,928 + HGI48_RS00475 0.72 +2.8
117,960 + HGI48_RS00475 0.80 +1.3
117,960 + HGI48_RS00475 0.80 +0.8
117,961 - HGI48_RS00475 0.80 +0.2
117,961 - -0.7
117,961 - HGI48_RS00475 0.80 +3.3
118,011 - +0.9
118,025 - -0.0
118,104 + -0.8
118,105 - +2.2
118,130 - -0.6
118,130 - -2.1
118,145 + -1.1
118,262 + -0.3
118,262 + -0.1
118,262 + +1.3
118,262 + -1.8
118,262 + -0.1
118,262 + -0.9
118,262 + +1.2
118,262 + -0.7
118,262 + +0.5
118,262 + +0.3
118,262 + +1.0
118,262 + +1.3
118,262 + +0.1
118,262 + -0.4
118,262 + +1.2
118,262 + +2.0
118,262 + -0.7
118,263 - +0.6
118,263 - -1.7
118,263 - -1.4
118,263 - +1.1
118,263 - +1.2
118,263 - -2.6
118,263 - -0.1
118,263 - -0.3
118,263 - -0.6
118,263 - +0.7
118,263 - +0.9
118,263 - -1.5
118,263 - +0.3
118,263 - -2.4
118,263 - -0.2
118,263 - -2.7
118,263 - -0.8
118,263 - +0.1
118,270 + +0.2
118,270 + +0.1
118,271 - +0.5
118,340 - HGI48_RS00480 0.13 +0.1
118,340 - HGI48_RS00480 0.13 +1.3
118,340 - HGI48_RS00480 0.13 -1.5
118,340 - HGI48_RS00480 0.13 -0.8
118,340 - HGI48_RS00480 0.13 -2.3
118,375 + HGI48_RS00480 0.15 -1.1
118,397 - HGI48_RS00480 0.17 -2.9
118,461 + HGI48_RS00480 0.21 +1.9
118,461 + HGI48_RS00480 0.21 +0.6
118,462 - HGI48_RS00480 0.21 -2.8
118,535 + HGI48_RS00480 0.26 +0.0
118,538 + HGI48_RS00480 0.26 +1.3
118,538 + HGI48_RS00480 0.26 -0.1
118,539 - HGI48_RS00480 0.26 -0.3
118,591 + HGI48_RS00480 0.29 -1.5
118,591 + HGI48_RS00480 0.29 +0.4
118,591 + HGI48_RS00480 0.29 -0.7
118,591 + HGI48_RS00480 0.29 -0.3
118,591 + HGI48_RS00480 0.29 -0.6
118,592 - HGI48_RS00480 0.29 +0.2
118,592 - HGI48_RS00480 0.29 -1.5
118,592 - HGI48_RS00480 0.29 +1.4
118,592 - HGI48_RS00480 0.29 -0.1
118,596 - HGI48_RS00480 0.30 +0.9
118,709 - HGI48_RS00480 0.37 -1.1
118,709 - HGI48_RS00480 0.37 -0.9
118,724 - HGI48_RS00480 0.38 -1.1
118,724 - +3.2
118,724 - HGI48_RS00480 0.38 +0.1
118,724 - -0.7
118,751 - HGI48_RS00480 0.40 -3.1
118,793 + +1.4
118,794 - HGI48_RS00480 0.43 -0.5
118,794 - HGI48_RS00480 0.43 +0.1
118,794 - HGI48_RS00480 0.43 -0.5
118,794 - HGI48_RS00480 0.43 -1.8
118,885 + HGI48_RS00480 0.49 +0.7
118,886 - HGI48_RS00480 0.49 +1.8
118,886 - HGI48_RS00480 0.49 -0.9
118,929 + HGI48_RS00480 0.52 +0.9
118,929 + HGI48_RS00480 0.52 +1.4
118,929 + +0.3
118,929 + HGI48_RS00480 0.52 -1.7
118,929 + HGI48_RS00480 0.52 +0.3
118,929 + HGI48_RS00480 0.52 +1.4
118,929 + HGI48_RS00480 0.52 -0.4
118,930 - HGI48_RS00480 0.52 -1.5
118,930 - HGI48_RS00480 0.52 +1.4
118,930 - HGI48_RS00480 0.52 +0.1
118,930 - -0.7
118,930 - -0.1
118,930 - -0.7
118,930 - HGI48_RS00480 0.52 +1.2
118,930 - HGI48_RS00480 0.52 +0.1
118,930 - HGI48_RS00480 0.52 -1.2
118,930 - HGI48_RS00480 0.52 -2.3
118,930 - HGI48_RS00480 0.52 -0.4
118,930 - HGI48_RS00480 0.52 -0.7
118,950 + HGI48_RS00480 0.53 +1.8
119,016 + HGI48_RS00480 0.57 -0.5
119,017 - HGI48_RS00480 0.57 -0.5
119,019 + -0.7
119,020 - HGI48_RS00480 0.57 -0.1
119,020 - HGI48_RS00480 0.57 -0.4
119,020 - HGI48_RS00480 0.57 +0.1
119,023 - +2.4

Or see this region's nucleotide sequence