Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00300 and HGI48_RS00305 are separated by 78 nucleotides HGI48_RS00305 and HGI48_RS00310 are separated by 230 nucleotides
HGI48_RS00300: HGI48_RS00300 - aldehyde dehydrogenase, at 76,572 to 78,110
_RS00300
HGI48_RS00305: HGI48_RS00305 - xylulokinase, at 78,189 to 79,649
_RS00305
HGI48_RS00310: HGI48_RS00310 - xylose isomerase, at 79,880 to 81,199
_RS00310
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 77.207 kb on + strand, within HGI48_RS00300 at 77.208 kb on - strand, within HGI48_RS00300 at 77.396 kb on + strand, within HGI48_RS00300 at 77.397 kb on - strand, within HGI48_RS00300 at 77.492 kb on + strand at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.493 kb on - strand, within HGI48_RS00300 at 77.621 kb on - strand at 77.639 kb on + strand, within HGI48_RS00300 at 77.652 kb on + strand, within HGI48_RS00300 at 77.652 kb on + strand at 77.652 kb on + strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.653 kb on - strand, within HGI48_RS00300 at 77.736 kb on + strand, within HGI48_RS00300 at 77.736 kb on + strand, within HGI48_RS00300 at 77.737 kb on - strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand, within HGI48_RS00300 at 77.739 kb on + strand at 77.739 kb on + strand, within HGI48_RS00300 at 77.740 kb on - strand, within HGI48_RS00300 at 77.740 kb on - strand, within HGI48_RS00300 at 77.740 kb on - strand, within HGI48_RS00300 at 77.917 kb on - strand, within HGI48_RS00300 at 77.964 kb on + strand at 77.965 kb on - strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.002 kb on + strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.003 kb on - strand at 78.051 kb on + strand at 78.081 kb on + strand at 78.082 kb on - strand at 78.082 kb on - strand at 78.108 kb on + strand at 78.160 kb on + strand at 78.160 kb on + strand at 78.161 kb on - strand at 78.161 kb on - strand at 78.250 kb on + strand at 78.250 kb on + strand at 78.649 kb on + strand, within HGI48_RS00305 at 78.649 kb on + strand, within HGI48_RS00305 at 78.874 kb on + strand, within HGI48_RS00305 at 78.874 kb on + strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.875 kb on - strand, within HGI48_RS00305 at 78.876 kb on + strand, within HGI48_RS00305 at 78.877 kb on - strand, within HGI48_RS00305 at 78.877 kb on - strand, within HGI48_RS00305 at 78.877 kb on - strand, within HGI48_RS00305 at 78.919 kb on + strand, within HGI48_RS00305 at 78.919 kb on + strand, within HGI48_RS00305 at 78.919 kb on + strand, within HGI48_RS00305 at 78.920 kb on - strand, within HGI48_RS00305 at 78.920 kb on - strand, within HGI48_RS00305 at 78.920 kb on - strand, within HGI48_RS00305 at 79.069 kb on - strand, within HGI48_RS00305 at 79.186 kb on + strand, within HGI48_RS00305 at 79.187 kb on - strand, within HGI48_RS00305 at 79.187 kb on - strand, within HGI48_RS00305 at 79.269 kb on - strand, within HGI48_RS00305 at 79.602 kb on + strand at 79.602 kb on + strand at 79.602 kb on + strand at 79.602 kb on + strand at 79.602 kb on + strand at 79.602 kb on + strand at 79.602 kb on + strand at 79.603 kb on - strand at 79.603 kb on - strand at 79.603 kb on - strand at 79.603 kb on - strand at 79.603 kb on - strand at 79.603 kb on - strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.645 kb on + strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.646 kb on - strand at 79.650 kb on - strand at 79.713 kb on + strand at 79.713 kb on + strand at 79.714 kb on - strand at 79.714 kb on - strand at 79.743 kb on + strand at 79.748 kb on - strand at 79.759 kb on + strand at 79.759 kb on + strand at 79.760 kb on - strand at 79.760 kb on - strand at 79.774 kb on + strand at 79.774 kb on + strand at 79.775 kb on - strand at 79.839 kb on + strand at 79.839 kb on + strand at 79.839 kb on + strand at 79.839 kb on + strand at 79.969 kb on - strand at 80.003 kb on + strand at 80.004 kb on - strand at 80.152 kb on - strand at 80.233 kb on - strand, within HGI48_RS00310 at 80.233 kb on - strand, within HGI48_RS00310 at 80.233 kb on - strand, within HGI48_RS00310 at 80.368 kb on + strand, within HGI48_RS00310 at 80.368 kb on + strand, within HGI48_RS00310 at 80.368 kb on + strand at 80.368 kb on + strand, within HGI48_RS00310 at 80.368 kb on + strand, within HGI48_RS00310 at 80.368 kb on + strand, within HGI48_RS00310 at 80.369 kb on - strand, within HGI48_RS00310 at 80.369 kb on - strand, within HGI48_RS00310 at 80.369 kb on - strand, within HGI48_RS00310 at 80.369 kb on - strand, within HGI48_RS00310 at 80.369 kb on - strand at 80.369 kb on - strand, within HGI48_RS00310 at 80.449 kb on - strand at 80.472 kb on + strand, within HGI48_RS00310 at 80.619 kb on + strand, within HGI48_RS00310 at 80.619 kb on + strand, within HGI48_RS00310 at 80.620 kb on - strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.646 kb on + strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand at 80.647 kb on - strand, within HGI48_RS00310 at 80.647 kb on - strand at 80.647 kb on - strand, within HGI48_RS00310
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 77,207 + HGI48_RS00300 0.41 +0.9 77,208 - HGI48_RS00300 0.41 -2.1 77,396 + HGI48_RS00300 0.54 +0.1 77,397 - HGI48_RS00300 0.54 -1.3 77,492 + +0.9 77,493 - HGI48_RS00300 0.60 -0.1 77,493 - HGI48_RS00300 0.60 +1.9 77,493 - HGI48_RS00300 0.60 -0.3 77,493 - HGI48_RS00300 0.60 -0.8 77,493 - HGI48_RS00300 0.60 -1.9 77,621 - +0.9 77,639 + HGI48_RS00300 0.69 +0.3 77,652 + HGI48_RS00300 0.70 -0.7 77,652 + +1.3 77,652 + HGI48_RS00300 0.70 +0.9 77,653 - HGI48_RS00300 0.70 +0.2 77,653 - HGI48_RS00300 0.70 -0.5 77,653 - HGI48_RS00300 0.70 +0.9 77,653 - HGI48_RS00300 0.70 +0.7 77,736 + HGI48_RS00300 0.76 -1.6 77,736 + HGI48_RS00300 0.76 -1.9 77,737 - HGI48_RS00300 0.76 +0.4 77,739 + HGI48_RS00300 0.76 -1.7 77,739 + HGI48_RS00300 0.76 +0.1 77,739 + HGI48_RS00300 0.76 -1.7 77,739 + HGI48_RS00300 0.76 +1.8 77,739 + -0.1 77,739 + HGI48_RS00300 0.76 -0.8 77,740 - HGI48_RS00300 0.76 +2.2 77,740 - HGI48_RS00300 0.76 +0.1 77,740 - HGI48_RS00300 0.76 -1.1 77,917 - HGI48_RS00300 0.87 +0.2 77,964 + +0.1 77,965 - +0.0 78,002 + +0.6 78,002 + +1.1 78,002 + +0.3 78,002 + -0.1 78,002 + -1.3 78,003 - +0.1 78,003 - +0.5 78,003 - -1.5 78,003 - -0.1 78,003 - +0.2 78,003 - +0.0 78,051 + -0.1 78,081 + +0.9 78,082 - +0.2 78,082 - -1.3 78,108 + -0.9 78,160 + +0.2 78,160 + +1.5 78,161 - +1.0 78,161 - -0.5 78,250 + +1.7 78,250 + -1.5 78,649 + HGI48_RS00305 0.31 +0.1 78,649 + HGI48_RS00305 0.31 +2.0 78,874 + HGI48_RS00305 0.47 -1.7 78,874 + HGI48_RS00305 0.47 +1.2 78,875 - HGI48_RS00305 0.47 -0.9 78,875 - HGI48_RS00305 0.47 +1.0 78,875 - HGI48_RS00305 0.47 -0.2 78,875 - HGI48_RS00305 0.47 -1.9 78,875 - HGI48_RS00305 0.47 -0.0 78,876 + HGI48_RS00305 0.47 +0.9 78,877 - HGI48_RS00305 0.47 -0.7 78,877 - HGI48_RS00305 0.47 -0.3 78,877 - HGI48_RS00305 0.47 +0.6 78,919 + HGI48_RS00305 0.50 -2.9 78,919 + HGI48_RS00305 0.50 +0.3 78,919 + HGI48_RS00305 0.50 -0.5 78,920 - HGI48_RS00305 0.50 -0.1 78,920 - HGI48_RS00305 0.50 +0.2 78,920 - HGI48_RS00305 0.50 -0.9 79,069 - HGI48_RS00305 0.60 -0.1 79,186 + HGI48_RS00305 0.68 +0.1 79,187 - HGI48_RS00305 0.68 +0.5 79,187 - HGI48_RS00305 0.68 -0.6 79,269 - HGI48_RS00305 0.74 -0.3 79,602 + +0.3 79,602 + -0.6 79,602 + +1.2 79,602 + +0.9 79,602 + +0.6 79,602 + +1.2 79,602 + +0.9 79,603 - -0.4 79,603 - +0.5 79,603 - +0.0 79,603 - -1.1 79,603 - -1.6 79,603 - +1.9 79,645 + -0.5 79,645 + -2.1 79,645 + -0.9 79,645 + -1.9 79,645 + -0.5 79,645 + +0.4 79,645 + +0.4 79,645 + -1.1 79,645 + -1.1 79,645 + +0.9 79,646 - -0.3 79,646 - -1.9 79,646 - -0.1 79,646 - +1.6 79,646 - +1.2 79,646 - -2.1 79,646 - -2.3 79,646 - -1.6 79,646 - -0.1 79,650 - -0.8 79,713 + -0.1 79,713 + -0.7 79,714 - -0.9 79,714 - +0.1 79,743 + +0.7 79,748 - +0.4 79,759 + -1.5 79,759 + +1.6 79,760 - -0.7 79,760 - -0.7 79,774 + -1.1 79,774 + -1.8 79,775 - -0.5 79,839 + -1.5 79,839 + -0.1 79,839 + -0.5 79,839 + +0.3 79,969 - +0.6 80,003 + +0.7 80,004 - -2.5 80,152 - +0.9 80,233 - HGI48_RS00310 0.27 -0.1 80,233 - HGI48_RS00310 0.27 +0.2 80,233 - HGI48_RS00310 0.27 +0.4 80,368 + HGI48_RS00310 0.37 -1.7 80,368 + HGI48_RS00310 0.37 +0.7 80,368 + -0.7 80,368 + HGI48_RS00310 0.37 -1.1 80,368 + HGI48_RS00310 0.37 -0.6 80,368 + HGI48_RS00310 0.37 -0.7 80,369 - HGI48_RS00310 0.37 -0.5 80,369 - HGI48_RS00310 0.37 +1.2 80,369 - HGI48_RS00310 0.37 +1.6 80,369 - HGI48_RS00310 0.37 -1.1 80,369 - -0.1 80,369 - HGI48_RS00310 0.37 +0.9 80,449 - +3.6 80,472 + HGI48_RS00310 0.45 -0.0 80,619 + HGI48_RS00310 0.56 -2.3 80,619 + HGI48_RS00310 0.56 +0.3 80,620 - HGI48_RS00310 0.56 +2.1 80,646 + HGI48_RS00310 0.58 -2.3 80,646 + +0.3 80,646 + HGI48_RS00310 0.58 -0.2 80,646 + HGI48_RS00310 0.58 -0.3 80,646 + HGI48_RS00310 0.58 -1.7 80,646 + HGI48_RS00310 0.58 -0.1 80,646 + HGI48_RS00310 0.58 -1.5 80,646 + HGI48_RS00310 0.58 +0.9 80,646 + HGI48_RS00310 0.58 -2.1 80,646 + HGI48_RS00310 0.58 +0.7 80,646 + HGI48_RS00310 0.58 -0.2 80,646 + HGI48_RS00310 0.58 +0.5 80,646 + HGI48_RS00310 0.58 +0.0 80,646 + HGI48_RS00310 0.58 -1.9 80,646 + HGI48_RS00310 0.58 +0.1 80,646 + HGI48_RS00310 0.58 -0.5 80,646 + HGI48_RS00310 0.58 -1.9 80,647 - HGI48_RS00310 0.58 -1.1 80,647 - HGI48_RS00310 0.58 -0.7 80,647 - HGI48_RS00310 0.58 +0.9 80,647 - HGI48_RS00310 0.58 +1.2 80,647 - HGI48_RS00310 0.58 -0.1 80,647 - HGI48_RS00310 0.58 +0.1 80,647 - +2.3 80,647 - HGI48_RS00310 0.58 -0.1 80,647 - HGI48_RS00310 0.58 +0.1 80,647 - -0.7 80,647 - HGI48_RS00310 0.58 -0.8 80,647 - -0.7 80,647 - HGI48_RS00310 0.58 -0.1
Or see this region's nucleotide sequence