Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21540

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,804,154	+		HGI48_RS21535	0.29	-1.0
4,804,154	+		HGI48_RS21535	0.29	+0.1
4,804,155	-		HGI48_RS21535	0.29	-1.8
4,804,181	+		HGI48_RS21535	0.31	-0.2
4,804,181	+		HGI48_RS21535	0.31	+0.6
4,804,181	+		HGI48_RS21535	0.31	-0.6
4,804,181	+		HGI48_RS21535	0.31	-0.8
4,804,182	-		HGI48_RS21535	0.31	-0.0
4,804,182	-		HGI48_RS21535	0.31	-2.6
4,804,197	+		HGI48_RS21535	0.33	-0.9
4,804,197	+		HGI48_RS21535	0.33	+0.2
4,804,197	+				+0.6
4,804,197	+				+0.6
4,804,197	+		HGI48_RS21535	0.33	+0.1
4,804,197	+		HGI48_RS21535	0.33	+1.2
4,804,197	+		HGI48_RS21535	0.33	-1.8
4,804,197	+				+0.6
4,804,197	+		HGI48_RS21535	0.33	-0.8
4,804,197	+		HGI48_RS21535	0.33	-1.4
4,804,197	+		HGI48_RS21535	0.33	-0.1
4,804,197	+		HGI48_RS21535	0.33	+1.0
4,804,197	+		HGI48_RS21535	0.33	+0.3
4,804,197	+				+1.3
4,804,197	+		HGI48_RS21535	0.33	+0.1
4,804,198	-		HGI48_RS21535	0.33	+0.6
4,804,198	-		HGI48_RS21535	0.33	+0.8
4,804,198	-		HGI48_RS21535	0.33	-1.4
4,804,198	-		HGI48_RS21535	0.33	-1.6
4,804,198	-		HGI48_RS21535	0.33	+0.7
4,804,198	-		HGI48_RS21535	0.33	-2.1
4,804,198	-		HGI48_RS21535	0.33	-2.0
4,804,198	-		HGI48_RS21535	0.33	+0.6
4,804,198	-				-0.4
4,804,198	-		HGI48_RS21535	0.33	+0.7
4,804,198	-		HGI48_RS21535	0.33	-0.4
4,804,198	-		HGI48_RS21535	0.33	+1.7
4,804,198	-		HGI48_RS21535	0.33	-0.3
4,804,198	-		HGI48_RS21535	0.33	-1.4
4,804,198	-				+2.4
4,804,198	-		HGI48_RS21535	0.33	-1.8
4,804,198	-		HGI48_RS21535	0.33	-2.2
4,804,286	+		HGI48_RS21535	0.40	+1.1
4,804,286	+		HGI48_RS21535	0.40	+0.6
4,804,287	-		HGI48_RS21535	0.40	-1.3
4,804,287	-		HGI48_RS21535	0.40	+0.3
4,804,306	+		HGI48_RS21535	0.42	+0.0
4,804,311	+		HGI48_RS21535	0.42	-0.1
4,804,311	+		HGI48_RS21535	0.42	+0.3
4,804,311	+		HGI48_RS21535	0.42	-1.8
4,804,312	-		HGI48_RS21535	0.42	-0.4
4,804,554	+		HGI48_RS21535	0.62	-1.8
4,804,554	+		HGI48_RS21535	0.62	+0.6
4,804,555	-		HGI48_RS21535	0.62	+0.3
4,804,555	-		HGI48_RS21535	0.62	-0.4
4,804,555	-		HGI48_RS21535	0.62	+0.7
4,804,575	+		HGI48_RS21535	0.63	-0.1
4,804,576	-		HGI48_RS21535	0.63	-0.1
4,804,576	-		HGI48_RS21535	0.63	-0.5
4,804,598	+		HGI48_RS21535	0.65	-0.8
4,804,598	+		HGI48_RS21535	0.65	+0.6
4,804,598	+		HGI48_RS21535	0.65	+0.7
4,804,598	+		HGI48_RS21535	0.65	-2.8
4,804,599	-		HGI48_RS21535	0.65	+0.7
4,804,599	-		HGI48_RS21535	0.65	-2.2
4,804,599	-		HGI48_RS21535	0.65	-0.6
4,804,599	-		HGI48_RS21535	0.65	-0.2
4,804,599	-				+4.0
4,804,599	-		HGI48_RS21535	0.65	-1.8
4,804,599	-		HGI48_RS21535	0.65	-2.3
4,804,599	-		HGI48_RS21535	0.65	-1.4
4,804,634	+		HGI48_RS21535	0.68	-0.8
4,804,634	+		HGI48_RS21535	0.68	-0.1
4,804,634	+		HGI48_RS21535	0.68	-1.8
4,804,634	+				+0.6
4,804,635	-		HGI48_RS21535	0.68	+0.6
4,804,683	+		HGI48_RS21535	0.72	-0.6
4,804,683	+		HGI48_RS21535	0.72	+0.2
4,804,684	-		HGI48_RS21535	0.72	+0.6
4,804,684	-				-0.4
4,804,684	-		HGI48_RS21535	0.72	-1.4
4,804,685	+		HGI48_RS21535	0.72	-1.0
4,804,685	+		HGI48_RS21535	0.72	+0.6
4,804,685	+		HGI48_RS21535	0.72	-1.3
4,804,685	+		HGI48_RS21535	0.72	-0.2
4,804,685	+		HGI48_RS21535	0.72	+0.2
4,804,686	-		HGI48_RS21535	0.72	+1.2
4,804,686	-		HGI48_RS21535	0.72	+1.6
4,804,686	-		HGI48_RS21535	0.72	-2.2
4,804,686	-		HGI48_RS21535	0.72	-0.1
4,804,700	+		HGI48_RS21535	0.74	-0.2
4,804,700	+				-0.4
4,804,788	+		HGI48_RS21535	0.81	+0.1
4,804,788	+		HGI48_RS21535	0.81	+0.2
4,804,788	+		HGI48_RS21535	0.81	-1.6
4,804,789	-		HGI48_RS21535	0.81	-0.8
4,804,789	-		HGI48_RS21535	0.81	-1.2
4,804,789	-		HGI48_RS21535	0.81	+0.8
4,804,789	-		HGI48_RS21535	0.81	-0.0
4,804,789	-		HGI48_RS21535	0.81	-0.3
4,804,917	+				-1.1
4,804,917	+				-1.4
4,804,918	-				-2.0
4,804,918	-				+0.1
4,804,953	+				-2.0
4,804,953	+				-1.3
4,804,953	+				-2.9
4,804,953	+				-1.2
4,804,953	+				+1.1
4,804,953	+				-1.4
4,804,954	-				-0.1
4,804,954	-				-0.0
4,804,954	-				+1.6
4,804,954	-				+1.3
4,804,955	+				-2.4
4,804,955	+				-0.4
4,804,956	-				+0.3
4,804,956	-				+0.3
4,804,964	+				-0.1
4,805,022	+				-1.4
4,805,022	+				-2.6
4,805,023	-				+0.1
4,805,062	+				+0.2
4,805,072	+				-1.0
4,805,073	-				-0.4
4,805,073	-				-2.2
4,805,080	+				+2.9
4,805,080	+				-0.2
4,805,080	+				-1.4
4,805,080	+				+0.8
4,805,080	+				-0.2
4,805,080	+				+0.2
4,805,080	+				+0.3
4,805,080	+				-0.5
4,805,080	+				-2.6
4,805,081	-				-1.4
4,805,081	-				+0.1
4,805,081	-				-0.2
4,805,081	-				-0.4
4,805,122	+				+0.0
4,805,122	+				+0.5
4,805,122	+				+0.8
4,805,122	+				+1.0
4,805,123	-				-1.8
4,805,123	-				-0.4
4,805,123	-				-0.8
4,805,183	+				+0.1
4,805,196	-				-0.5
4,805,234	-				-1.1
4,805,234	-				+0.2
4,805,385	-		HGI48_RS21540	0.13	+0.2
4,805,435	-		HGI48_RS21540	0.15	-1.8
4,805,435	-		HGI48_RS21540	0.15	-2.4
4,805,530	+		HGI48_RS21540	0.19	-1.2
4,805,530	+		HGI48_RS21540	0.19	+0.2
4,805,530	+		HGI48_RS21540	0.19	+1.0
4,805,530	+		HGI48_RS21540	0.19	+0.2
4,805,530	+		HGI48_RS21540	0.19	-0.1
4,805,531	-		HGI48_RS21540	0.20	+0.3
4,805,531	-		HGI48_RS21540	0.20	-0.4
4,805,531	-		HGI48_RS21540	0.20	-0.4
4,805,531	-		HGI48_RS21540	0.20	+0.2
4,805,629	+		HGI48_RS21540	0.24	+0.9
4,805,629	+		HGI48_RS21540	0.24	+0.6
4,805,630	-		HGI48_RS21540	0.24	-1.0
4,805,630	-		HGI48_RS21540	0.24	-0.1
4,805,630	-		HGI48_RS21540	0.24	+0.5
4,805,743	+		HGI48_RS21540	0.29	-0.6
4,805,743	+		HGI48_RS21540	0.29	+0.4
4,805,889	+		HGI48_RS21540	0.35	-0.0
4,805,909	+		HGI48_RS21540	0.36	-0.4
4,805,910	-		HGI48_RS21540	0.36	-0.8
4,805,914	+		HGI48_RS21540	0.36	+0.5
4,805,914	+				+3.8
4,805,914	+		HGI48_RS21540	0.36	-0.1
4,805,914	+		HGI48_RS21540	0.36	-0.1
4,805,915	-		HGI48_RS21540	0.36	-1.4
4,805,915	-		HGI48_RS21540	0.36	-1.0
4,805,915	-		HGI48_RS21540	0.36	-0.2
4,805,915	-		HGI48_RS21540	0.36	+0.8
4,806,128	+		HGI48_RS21540	0.45	+0.2
4,806,144	+		HGI48_RS21540	0.46	-1.3
4,806,144	+		HGI48_RS21540	0.46	-0.7
4,806,145	-		HGI48_RS21540	0.46	+0.4
4,806,171	-		HGI48_RS21540	0.47	-1.2
4,806,171	-		HGI48_RS21540	0.47	+1.7
4,806,235	+		HGI48_RS21540	0.50	-1.2
4,806,263	+		HGI48_RS21540	0.51	-0.2
4,806,264	-		HGI48_RS21540	0.51	-0.8
4,806,333	+		HGI48_RS21540	0.54	+0.4
4,806,334	-		HGI48_RS21540	0.54	+0.2
4,806,334	-		HGI48_RS21540	0.54	+1.1
4,806,434	+		HGI48_RS21540	0.59	+1.3
4,806,434	+		HGI48_RS21540	0.59	-1.4
4,806,501	+		HGI48_RS21540	0.61	+0.6
4,806,526	-		HGI48_RS21540	0.62	-3.2
4,806,526	-				+1.6
4,806,526	-		HGI48_RS21540	0.62	+0.2
4,806,560	+		HGI48_RS21540	0.64	+0.1
4,806,561	-		HGI48_RS21540	0.64	+1.6
4,806,579	+		HGI48_RS21540	0.65	+0.2
4,806,579	+		HGI48_RS21540	0.65	-0.3
4,806,579	+		HGI48_RS21540	0.65	+1.6
4,806,579	+		HGI48_RS21540	0.65	+1.0
4,806,579	+		HGI48_RS21540	0.65	+0.3
4,806,579	+		HGI48_RS21540	0.65	-0.3
4,806,579	+		HGI48_RS21540	0.65	-1.8
4,806,579	+		HGI48_RS21540	0.65	-0.2
4,806,579	+		HGI48_RS21540	0.65	-0.3
4,806,579	+		HGI48_RS21540	0.65	+0.1
4,806,579	+		HGI48_RS21540	0.65	-0.2
4,806,580	-				-1.0
4,806,580	-		HGI48_RS21540	0.65	-0.7
4,806,580	-		HGI48_RS21540	0.65	-1.4
4,806,580	-		HGI48_RS21540	0.65	-0.8
4,806,580	-		HGI48_RS21540	0.65	-0.2
4,806,580	-				+1.8
4,806,580	-		HGI48_RS21540	0.65	+0.6
4,806,580	-				+0.6
4,806,607	+		HGI48_RS21540	0.66	-1.0
4,806,607	+		HGI48_RS21540	0.66	-0.2
4,806,608	-		HGI48_RS21540	0.66	-2.0
4,806,608	-		HGI48_RS21540	0.66	+1.4
4,806,608	-		HGI48_RS21540	0.66	+0.7
4,806,608	-		HGI48_RS21540	0.66	-0.8
4,806,699	-		HGI48_RS21540	0.70	+0.4
4,806,714	-		HGI48_RS21540	0.71	-2.6
4,806,714	-		HGI48_RS21540	0.71	-2.8
4,806,748	+		HGI48_RS21540	0.72	+0.2
4,806,748	+		HGI48_RS21540	0.72	-2.4
4,806,748	+		HGI48_RS21540	0.72	+2.2
4,806,748	+		HGI48_RS21540	0.72	-0.9
4,806,748	+				+2.2
4,806,748	+		HGI48_RS21540	0.72	-0.4
4,806,748	+		HGI48_RS21540	0.72	+1.9
4,806,748	+		HGI48_RS21540	0.72	-0.8
4,806,748	+		HGI48_RS21540	0.72	-0.6
4,806,748	+		HGI48_RS21540	0.72	-1.8
4,806,748	+		HGI48_RS21540	0.72	+1.9
4,806,748	+		HGI48_RS21540	0.72	+0.6
4,806,748	+		HGI48_RS21540	0.72	+0.8
4,806,748	+		HGI48_RS21540	0.72	+1.1
4,806,748	+		HGI48_RS21540	0.72	-0.6
4,806,748	+		HGI48_RS21540	0.72	+1.6
4,806,748	+		HGI48_RS21540	0.72	-1.2
4,806,748	+				-0.0
4,806,748	+		HGI48_RS21540	0.72	-0.8
4,806,748	+				+0.6
4,806,748	+		HGI48_RS21540	0.72	-1.2
4,806,748	+		HGI48_RS21540	0.72	-0.0
4,806,748	+		HGI48_RS21540	0.72	+1.0
4,806,749	-		HGI48_RS21540	0.72	-1.8
4,806,749	-		HGI48_RS21540	0.72	-3.2
4,806,749	-		HGI48_RS21540	0.72	+0.9
4,806,749	-		HGI48_RS21540	0.72	-1.9
4,806,749	-		HGI48_RS21540	0.72	-1.0
4,806,749	-		HGI48_RS21540	0.72	-2.0
4,806,749	-		HGI48_RS21540	0.72	-0.2
4,806,749	-		HGI48_RS21540	0.72	-2.6
4,806,749	-		HGI48_RS21540	0.72	-1.9
4,806,749	-		HGI48_RS21540	0.72	-0.0
4,806,749	-		HGI48_RS21540	0.72	-0.1
4,806,749	-		HGI48_RS21540	0.72	-0.1
4,806,749	-		HGI48_RS21540	0.72	-2.0
4,806,770	+		HGI48_RS21540	0.73	-0.7
4,806,770	+		HGI48_RS21540	0.73	-1.0
4,806,770	+		HGI48_RS21540	0.73	-2.1
4,806,770	+		HGI48_RS21540	0.73	-0.0
4,806,770	+				+0.6
4,806,770	+		HGI48_RS21540	0.73	-1.4
4,806,770	+				-0.4
4,806,771	-		HGI48_RS21540	0.73	-0.4
4,806,771	-				-1.0
4,806,827	-		HGI48_RS21540	0.75	-1.0
4,806,842	+		HGI48_RS21540	0.76	+0.7
4,806,842	+		HGI48_RS21540	0.76	+0.6
4,806,842	+		HGI48_RS21540	0.76	-0.1
4,806,842	+		HGI48_RS21540	0.76	+0.6
4,806,842	+		HGI48_RS21540	0.76	-0.2
4,806,842	+		HGI48_RS21540	0.76	-2.2
4,806,843	-		HGI48_RS21540	0.76	-0.4
4,806,843	-		HGI48_RS21540	0.76	+0.3
4,806,843	-		HGI48_RS21540	0.76	-1.4
4,806,843	-		HGI48_RS21540	0.76	-2.2
4,806,843	-		HGI48_RS21540	0.76	-0.2
4,806,995	+		HGI48_RS21540	0.83	-0.4
4,806,995	+		HGI48_RS21540	0.83	-2.2
4,806,996	-		HGI48_RS21540	0.83	-2.2
4,806,996	-				+0.6
4,807,066	+		HGI48_RS21540	0.86	+0.6
4,807,066	+		HGI48_RS21540	0.86	-1.0
4,807,238	+				-0.5
4,807,239	-				-0.3
4,807,282	-				-0.5
4,807,293	+				-1.3
4,807,293	+				-2.4
4,807,293	+				-1.4
4,807,323	+				+0.2
4,807,323	+				-0.7
4,807,324	-				-0.4
4,807,324	-				+0.9
4,807,327	+				-0.5
4,807,327	+				+0.6
4,807,328	-				+0.7
4,807,328	-				+0.2
4,807,329	+				-1.4
4,807,329	+				-2.4
4,807,329	+				-1.7
4,807,329	+				+1.5
4,807,329	+				+0.7
4,807,330	-				-0.1
4,807,346	-				+0.9
4,807,384	+				+1.6
4,807,481	-				+0.3
4,807,499	+				+1.7
4,807,500	-				+1.2
4,807,500	-				-1.0
4,807,541	-				+0.1
4,807,544	+				+0.4
4,807,544	+				-0.2
4,807,545	-				-0.7
4,807,545	-				+0.1
4,807,552	+				-0.1
4,807,555	-				+1.6
4,807,555	-				+0.7
4,807,555	-				-1.8
4,807,555	-				-1.9
4,807,555	-				-1.0
4,807,638	+				+1.1
4,807,648	+				-0.4
4,807,668	-				+1.3
4,807,668	-				-1.4
4,807,668	-				+0.9
4,807,668	-				+0.6
4,807,668	-				-1.0
4,807,694	+				-0.8
4,807,694	+				+0.6
4,807,695	-				-0.9
4,807,695	-				-0.8
4,807,705	+				-0.6
4,807,705	+				-2.0
4,807,726	+				+1.6
4,807,726	+				+1.4
4,807,727	-				-1.0
4,807,728	+				-0.8
4,807,728	+				+0.6
4,807,728	+				-2.2
4,807,729	-				-1.8
4,807,729	-				-1.5
4,807,766	+				+1.3
4,807,766	+				+1.2
4,807,766	+				+0.7
4,807,766	+				-0.7
4,807,767	-				-0.3
4,807,770	+				-0.5
4,807,797	+				+0.3
4,807,797	+				-0.8
4,807,797	+				+0.6
4,807,797	+				+0.2
4,807,797	+				-0.6
4,807,798	-				+0.2
4,807,798	-				-1.0
4,807,798	-				-0.8
4,807,798	-				-1.8
4,807,798	-				-0.6
4,807,798	-				-1.4
4,807,812	-				+1.2
4,807,822	-				-0.1
4,807,825	+				+0.6
4,807,825	+				+2.5
4,807,826	-				+1.0
4,807,887	+				-0.2
4,807,900	+				+1.6
4,807,906	+				-1.4
4,807,906	+				-0.9
4,807,906	+				-0.0
4,807,907	-				-2.4
4,807,907	-				+0.9
4,807,907	-				-1.3
4,807,907	-				+0.1
4,807,938	-				-0.0
4,807,943	+				-1.3
4,807,959	-				-0.8
4,807,994	+		HGI48_RS21545	0.11	+0.5
4,807,994	+		HGI48_RS21545	0.11	-3.2
4,807,994	+		HGI48_RS21545	0.11	-0.9
4,807,995	-		HGI48_RS21545	0.11	-0.3
4,807,995	-		HGI48_RS21545	0.11	-0.8
4,807,995	-		HGI48_RS21545	0.11	-0.4
4,807,995	-				+1.3
4,808,051	+		HGI48_RS21545	0.15	-0.0
4,808,051	+		HGI48_RS21545	0.15	-0.5
4,808,051	+		HGI48_RS21545	0.15	-0.4
4,808,052	-		HGI48_RS21545	0.15	+0.6
4,808,052	-		HGI48_RS21545	0.15	-0.0
4,808,054	+		HGI48_RS21545	0.15	+0.6
4,808,055	-		HGI48_RS21545	0.15	-0.3
4,808,176	+		HGI48_RS21545	0.24	+1.0
4,808,177	-		HGI48_RS21545	0.24	+0.7
4,808,177	-		HGI48_RS21545	0.24	+0.4
4,808,184	+		HGI48_RS21545	0.24	-0.4
4,808,185	-		HGI48_RS21545	0.25	-0.3
4,808,196	+		HGI48_RS21545	0.25	+0.6
4,808,196	+				+0.6
4,808,197	-		HGI48_RS21545	0.25	+0.4
4,808,197	-		HGI48_RS21545	0.25	-1.1
4,808,197	-		HGI48_RS21545	0.25	-2.4
4,808,197	-		HGI48_RS21545	0.25	-1.2
4,808,200	+		HGI48_RS21545	0.26	+1.6
4,808,200	+		HGI48_RS21545	0.26	-0.5
4,808,200	+		HGI48_RS21545	0.26	+1.6
4,808,200	+		HGI48_RS21545	0.26	-1.4
4,808,200	+		HGI48_RS21545	0.26	+0.8
4,808,200	+		HGI48_RS21545	0.26	+0.2
4,808,200	+		HGI48_RS21545	0.26	-1.8
4,808,200	+		HGI48_RS21545	0.26	+0.6
4,808,200	+		HGI48_RS21545	0.26	-0.8
4,808,201	-		HGI48_RS21545	0.26	-0.8
4,808,201	-		HGI48_RS21545	0.26	+1.2
4,808,201	-		HGI48_RS21545	0.26	+0.8
4,808,201	-		HGI48_RS21545	0.26	-1.1
4,808,201	-		HGI48_RS21545	0.26	+0.6
4,808,201	-		HGI48_RS21545	0.26	+0.9
4,808,201	-		HGI48_RS21545	0.26	-0.2
4,808,201	-		HGI48_RS21545	0.26	-0.6
4,808,201	-		HGI48_RS21545	0.26	+1.7
4,808,201	-		HGI48_RS21545	0.26	+0.5
4,808,201	-				-1.0
4,808,201	-		HGI48_RS21545	0.26	+2.3
4,808,201	-		HGI48_RS21545	0.26	+1.1
4,808,202	+		HGI48_RS21545	0.26	-1.0
4,808,202	+		HGI48_RS21545	0.26	-0.4
4,808,202	+		HGI48_RS21545	0.26	-1.3
4,808,202	+		HGI48_RS21545	0.26	-0.8
4,808,243	+				+0.6
4,808,244	-		HGI48_RS21545	0.29	+0.6
4,808,244	-		HGI48_RS21545	0.29	+0.8
4,808,313	+		HGI48_RS21545	0.33	-1.4
4,808,313	+		HGI48_RS21545	0.33	+0.7
4,808,313	+		HGI48_RS21545	0.33	-1.8
4,808,313	+		HGI48_RS21545	0.33	-1.4
4,808,314	-		HGI48_RS21545	0.33	+1.4
4,808,314	-		HGI48_RS21545	0.33	-0.8
4,808,314	-		HGI48_RS21545	0.33	+0.8
4,808,314	-		HGI48_RS21545	0.33	-0.0
4,808,314	-		HGI48_RS21545	0.33	-0.3
4,808,314	-		HGI48_RS21545	0.33	+0.4
4,808,314	-				-0.4
4,808,314	-		HGI48_RS21545	0.33	+0.9