Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18990

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
4,262,910	+		HGI48_RS18980	0.72	+1.1
4,262,910	+		HGI48_RS18980	0.72	+0.2
4,262,942	+		HGI48_RS18980	0.75	-0.7
4,262,957	-		HGI48_RS18980	0.77	-0.5
4,262,992	+		HGI48_RS18980	0.81	+1.0
4,262,993	-		HGI48_RS18980	0.81	+0.5
4,262,993	-				+1.7
4,262,993	-		HGI48_RS18980	0.81	-0.1
4,262,993	-		HGI48_RS18980	0.81	-2.1
4,263,075	+		HGI48_RS18980	0.90	-0.1
4,263,075	+		HGI48_RS18980	0.90	+0.7
4,263,075	+		HGI48_RS18980	0.90	+0.6
4,263,076	-		HGI48_RS18980	0.90	-0.8
4,263,076	-		HGI48_RS18980	0.90	-1.1
4,263,107	+				+0.7
4,263,108	-				+0.8
4,263,114	-				-0.2
4,263,126	+				+1.3
4,263,127	-				+2.0
4,263,127	-				+0.8
4,263,147	+				-1.1
4,263,148	-				+0.5
4,263,148	-				+0.9
4,263,163	+				+1.0
4,263,164	-				+0.1
4,263,170	+				-1.5
4,263,170	+				-2.6
4,263,171	-				-0.5
4,263,171	-				+1.2
4,263,229	-				-0.1
4,263,355	-		HGI48_RS18985	0.28	-0.3
4,263,379	+		HGI48_RS18985	0.31	-1.6
4,263,380	-		HGI48_RS18985	0.31	-0.2
4,263,397	+		HGI48_RS18985	0.34	+0.7
4,263,397	+		HGI48_RS18985	0.34	-1.5
4,263,397	+		HGI48_RS18985	0.34	+0.2
4,263,400	-		HGI48_RS18985	0.34	-1.2
4,263,427	+		HGI48_RS18985	0.38	-1.3
4,263,633	-		HGI48_RS18985	0.69	+0.7
4,263,679	-		HGI48_RS18985	0.76	-0.7
4,263,809	+				+1.0
4,263,809	+				+0.3
4,263,809	+				+0.5
4,263,810	-				-0.0
4,263,813	+				-0.2
4,263,813	+				-0.1
4,263,813	+				-1.2
4,263,814	-				-2.1
4,263,878	+				+0.2
4,263,878	+				-0.7
4,263,878	+				-0.9
4,263,878	+				+0.1
4,263,879	-				-0.5
4,263,879	-				+1.3
4,263,879	-				-0.1
4,263,879	-				+0.5
4,263,879	-				-1.6
4,263,889	+				-1.1
4,263,960	+		HGI48_RS18990	0.11	-0.5
4,263,960	+		HGI48_RS18990	0.11	-0.5
4,263,960	+		HGI48_RS18990	0.11	-0.9
4,263,960	+		HGI48_RS18990	0.11	+0.2
4,263,961	-				+2.7
4,263,961	-		HGI48_RS18990	0.11	-0.7
4,263,961	-		HGI48_RS18990	0.11	+0.1
4,263,961	-		HGI48_RS18990	0.11	-0.1
4,263,961	-		HGI48_RS18990	0.11	-0.7
4,263,961	-		HGI48_RS18990	0.11	+0.3
4,263,961	-		HGI48_RS18990	0.11	+0.4
4,263,961	-		HGI48_RS18990	0.11	-1.8
4,263,964	+				+1.7
4,263,964	+		HGI48_RS18990	0.11	-0.7
4,263,965	-		HGI48_RS18990	0.11	+1.1
4,263,965	-		HGI48_RS18990	0.11	-2.1
4,263,965	-		HGI48_RS18990	0.11	-0.5
4,263,976	+		HGI48_RS18990	0.13	+0.1
4,263,977	-		HGI48_RS18990	0.13	-0.1
4,264,019	-		HGI48_RS18990	0.17	-2.1
4,264,072	+				-1.1
4,264,190	+		HGI48_RS18990	0.35	+0.4
4,264,190	+		HGI48_RS18990	0.35	-2.9
4,264,191	-		HGI48_RS18990	0.35	+1.2
4,264,191	-		HGI48_RS18990	0.35	-0.4
4,264,249	+		HGI48_RS18990	0.41	+0.9
4,264,249	+		HGI48_RS18990	0.41	+1.5
4,264,250	-		HGI48_RS18990	0.41	+0.8
4,264,254	-		HGI48_RS18990	0.42	+1.2
4,264,254	-		HGI48_RS18990	0.42	-0.4
4,264,254	-		HGI48_RS18990	0.42	-0.7
4,264,266	+		HGI48_RS18990	0.43	+0.0
4,264,267	-		HGI48_RS18990	0.43	-0.4
4,264,290	+		HGI48_RS18990	0.46	+1.2
4,264,290	+		HGI48_RS18990	0.46	+1.1
4,264,290	+		HGI48_RS18990	0.46	-0.3
4,264,291	-		HGI48_RS18990	0.46	-0.5
4,264,319	-		HGI48_RS18990	0.49	-0.3
4,264,415	+				+0.5
4,264,416	-		HGI48_RS18990	0.59	-0.4
4,264,508	-		HGI48_RS18990	0.69	-0.5
4,264,558	+		HGI48_RS18990	0.74	-3.6
4,264,559	-		HGI48_RS18990	0.74	-0.3
4,264,567	+		HGI48_RS18990	0.75	+1.1
4,264,611	+		HGI48_RS18990	0.80	+0.3
4,264,688	+		HGI48_RS18990	0.88	-0.0
4,264,725	+				-0.9
4,264,746	+				+0.1
4,264,746	+				+2.1
4,264,770	-				+1.0
4,264,909	-		HGI48_RS18995	0.15	+0.6
4,264,910	+		HGI48_RS18995	0.16	-0.6
4,265,230	+				-0.5
4,265,230	+				-2.5
4,265,230	+				+0.6
4,265,230	+				+0.1
4,265,231	-				+0.3
4,265,231	-				+0.2
4,265,231	-				+2.1
4,265,233	-				-1.8
4,265,233	-				+0.1
4,265,233	-				-0.5
4,265,233	-				-0.4
4,265,235	-				-1.3
4,265,336	+		HGI48_RS19000	0.13	-0.8
4,265,336	+		HGI48_RS19000	0.13	+0.3
4,265,336	+		HGI48_RS19000	0.13	+0.2
4,265,336	+		HGI48_RS19000	0.13	-0.5
4,265,336	+		HGI48_RS19000	0.13	-0.8
4,265,337	-		HGI48_RS19000	0.13	-0.8
4,265,337	-		HGI48_RS19000	0.13	+0.8
4,265,337	-		HGI48_RS19000	0.13	-0.4
4,265,337	-		HGI48_RS19000	0.13	-0.9
4,265,337	-		HGI48_RS19000	0.13	-0.6
4,265,337	-		HGI48_RS19000	0.13	-1.0
4,265,337	-				-1.1
4,265,337	-		HGI48_RS19000	0.13	-1.8
4,265,337	-		HGI48_RS19000	0.13	-2.3
4,265,467	+		HGI48_RS19000	0.21	+1.6
4,265,467	+		HGI48_RS19000	0.21	-2.1
4,265,467	+		HGI48_RS19000	0.21	-0.2
4,265,467	+		HGI48_RS19000	0.21	-1.5
4,265,468	-		HGI48_RS19000	0.21	-0.9
4,265,495	+		HGI48_RS19000	0.23	-1.0
4,265,496	-		HGI48_RS19000	0.23	+0.5
4,265,511	+		HGI48_RS19000	0.24	-0.9
4,265,514	+				-1.1
4,265,514	+		HGI48_RS19000	0.24	+0.6
4,265,514	+		HGI48_RS19000	0.24	-0.4
4,265,515	-		HGI48_RS19000	0.25	-0.1
4,265,525	+		HGI48_RS19000	0.25	-0.4
4,265,580	-		HGI48_RS19000	0.29	-0.5
4,265,734	+		HGI48_RS19000	0.39	+0.5
4,265,768	-				+1.7
4,265,772	+		HGI48_RS19000	0.41	-2.3
4,265,772	+		HGI48_RS19000	0.41	-0.3
4,265,777	-		HGI48_RS19000	0.42	+0.2
4,265,780	-		HGI48_RS19000	0.42	-0.5
4,265,788	+		HGI48_RS19000	0.42	-1.3