Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18740 and HGI48_RS18745 are separated by 118 nucleotides HGI48_RS18745 and HGI48_RS18750 are separated by 151 nucleotides HGI48_RS18750 and HGI48_RS18755 are separated by 345 nucleotides
HGI48_RS18740: HGI48_RS18740 - organic hydroperoxide resistance protein, at 4,202,369 to 4,202,794
_RS18740
HGI48_RS18745: HGI48_RS18745 - MarR family transcriptional regulator, at 4,202,913 to 4,203,383
_RS18745
HGI48_RS18750: HGI48_RS18750 - p-aminobenzoyl-glutamate transporter, at 4,203,535 to 4,205,058
_RS18750
HGI48_RS18755: HGI48_RS18755 - amidohydrolase, at 4,205,404 to 4,206,855
_RS18755
Position (kb) 4203
4204
4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4202.772 kb on + strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.788 kb on + strand at 4202.789 kb on - strand at 4202.789 kb on - strand at 4202.808 kb on + strand at 4202.808 kb on + strand at 4202.808 kb on + strand at 4202.808 kb on + strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.829 kb on + strand at 4202.869 kb on - strand at 4202.896 kb on + strand at 4202.896 kb on + strand at 4202.896 kb on + strand at 4202.896 kb on + strand at 4202.897 kb on - strand at 4202.897 kb on - strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.982 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4203.042 kb on - strand, within HGI48_RS18745 at 4203.042 kb on - strand, within HGI48_RS18745 at 4203.106 kb on - strand, within HGI48_RS18745 at 4203.239 kb on - strand, within HGI48_RS18745 at 4203.239 kb on - strand, within HGI48_RS18745 at 4203.272 kb on - strand, within HGI48_RS18745 at 4203.302 kb on - strand, within HGI48_RS18745 at 4203.365 kb on + strand at 4203.366 kb on - strand at 4203.366 kb on - strand at 4203.366 kb on - strand at 4203.366 kb on - strand at 4203.527 kb on + strand at 4203.528 kb on - strand at 4203.528 kb on - strand at 4203.536 kb on + strand at 4203.536 kb on + strand at 4203.538 kb on + strand at 4203.539 kb on - strand at 4203.539 kb on - strand at 4203.647 kb on + strand at 4203.648 kb on - strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.678 kb on - strand at 4203.700 kb on + strand, within HGI48_RS18750 at 4203.701 kb on - strand, within HGI48_RS18750 at 4203.701 kb on - strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.978 kb on + strand, within HGI48_RS18750 at 4204.179 kb on + strand, within HGI48_RS18750 at 4204.179 kb on + strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.331 kb on + strand, within HGI48_RS18750 at 4204.422 kb on + strand, within HGI48_RS18750 at 4204.422 kb on + strand, within HGI48_RS18750 at 4204.423 kb on - strand at 4204.423 kb on - strand, within HGI48_RS18750 at 4204.456 kb on - strand at 4204.524 kb on + strand, within HGI48_RS18750 at 4204.674 kb on + strand at 4204.674 kb on + strand, within HGI48_RS18750 at 4204.674 kb on + strand at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.675 kb on - strand at 4204.675 kb on - strand, within HGI48_RS18750 at 4204.676 kb on + strand, within HGI48_RS18750 at 4204.676 kb on + strand, within HGI48_RS18750 at 4204.676 kb on + strand, within HGI48_RS18750 at 4204.676 kb on + strand, within HGI48_RS18750 at 4204.677 kb on - strand at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.677 kb on - strand, within HGI48_RS18750 at 4204.716 kb on - strand, within HGI48_RS18750 at 4204.716 kb on - strand, within HGI48_RS18750 at 4204.956 kb on - strand at 4205.154 kb on + strand at 4205.155 kb on - strand at 4205.283 kb on + strand at 4205.284 kb on - strand at 4205.302 kb on + strand at 4205.302 kb on + strand at 4205.303 kb on - strand at 4205.325 kb on - strand at 4205.389 kb on + strand at 4205.389 kb on + strand at 4205.414 kb on - strand at 4205.613 kb on + strand, within HGI48_RS18755 at 4205.613 kb on + strand, within HGI48_RS18755 at 4205.636 kb on + strand, within HGI48_RS18755 at 4205.636 kb on + strand, within HGI48_RS18755 at 4205.726 kb on + strand, within HGI48_RS18755 at 4205.726 kb on + strand, within HGI48_RS18755 at 4205.726 kb on + strand, within HGI48_RS18755 at 4205.727 kb on - strand, within HGI48_RS18755 at 4205.888 kb on + strand, within HGI48_RS18755 at 4205.921 kb on + strand, within HGI48_RS18755 at 4205.921 kb on + strand, within HGI48_RS18755 at 4205.922 kb on - strand, within HGI48_RS18755 at 4205.922 kb on - strand, within HGI48_RS18755 at 4205.922 kb on - strand, within HGI48_RS18755 at 4205.922 kb on - strand at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.954 kb on + strand at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.954 kb on + strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4205.955 kb on - strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.041 kb on + strand, within HGI48_RS18755 at 4206.042 kb on - strand, within HGI48_RS18755 at 4206.042 kb on - strand, within HGI48_RS18755 at 4206.042 kb on - strand, within HGI48_RS18755 at 4206.042 kb on - strand, within HGI48_RS18755 at 4206.042 kb on - strand, within HGI48_RS18755 at 4206.042 kb on - strand, within HGI48_RS18755
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,202,772 + +0.3 4,202,773 - -2.5 4,202,773 - -0.1 4,202,773 - -1.1 4,202,773 - -1.6 4,202,773 - -1.5 4,202,773 - -1.8 4,202,773 - +0.6 4,202,773 - -0.1 4,202,773 - +0.1 4,202,773 - +0.8 4,202,773 - -0.8 4,202,788 + +1.3 4,202,789 - +0.5 4,202,789 - +0.2 4,202,808 + +0.2 4,202,808 + -0.4 4,202,808 + +1.1 4,202,808 + -0.5 4,202,809 - +2.5 4,202,809 - +0.5 4,202,809 - -2.7 4,202,809 - +0.8 4,202,809 - -1.1 4,202,829 + +0.3 4,202,869 - -0.2 4,202,896 + -0.1 4,202,896 + -1.8 4,202,896 + -0.9 4,202,896 + -0.0 4,202,897 - +0.7 4,202,897 - -0.6 4,202,918 + -0.5 4,202,918 + -1.8 4,202,918 + -1.7 4,202,918 + -0.5 4,202,918 + -0.2 4,202,918 + -0.3 4,202,918 + +1.0 4,202,919 - +1.8 4,202,919 - +1.5 4,202,919 - -0.5 4,202,919 - +0.7 4,202,919 - -0.5 4,202,982 - HGI48_RS18745 0.15 +1.0 4,202,985 - HGI48_RS18745 0.15 -0.7 4,202,985 - HGI48_RS18745 0.15 -2.8 4,202,985 - HGI48_RS18745 0.15 -0.9 4,202,985 - HGI48_RS18745 0.15 -0.9 4,202,985 - HGI48_RS18745 0.15 +0.3 4,202,985 - HGI48_RS18745 0.15 +1.9 4,203,042 - HGI48_RS18745 0.27 -0.7 4,203,042 - HGI48_RS18745 0.27 +2.0 4,203,106 - HGI48_RS18745 0.41 -1.3 4,203,239 - HGI48_RS18745 0.69 +0.8 4,203,239 - HGI48_RS18745 0.69 +1.4 4,203,272 - HGI48_RS18745 0.76 +0.3 4,203,302 - HGI48_RS18745 0.83 +0.3 4,203,365 + -0.2 4,203,366 - -3.1 4,203,366 - -1.8 4,203,366 - +1.5 4,203,366 - -1.3 4,203,527 + -0.1 4,203,528 - -1.5 4,203,528 - -1.5 4,203,536 + +1.0 4,203,536 + +1.0 4,203,538 + -0.5 4,203,539 - -1.5 4,203,539 - +0.2 4,203,647 + -0.4 4,203,648 - +0.8 4,203,650 + -1.9 4,203,650 + -0.2 4,203,650 + +0.9 4,203,650 + -0.6 4,203,650 + -0.4 4,203,650 + +1.1 4,203,651 - -0.8 4,203,651 - -0.7 4,203,651 - -0.1 4,203,651 - -2.7 4,203,651 - +0.3 4,203,651 - +0.7 4,203,651 - -1.2 4,203,651 - +0.5 4,203,651 - +0.9 4,203,678 - +1.8 4,203,700 + HGI48_RS18750 0.11 +0.3 4,203,701 - HGI48_RS18750 0.11 -0.4 4,203,701 - HGI48_RS18750 0.11 -2.9 4,203,861 + HGI48_RS18750 0.21 -0.8 4,203,861 + HGI48_RS18750 0.21 +1.0 4,203,861 + HGI48_RS18750 0.21 -0.8 4,203,861 + HGI48_RS18750 0.21 +0.3 4,203,861 + HGI48_RS18750 0.21 +0.5 4,203,861 + HGI48_RS18750 0.21 -2.1 4,203,861 + HGI48_RS18750 0.21 -0.4 4,203,862 - HGI48_RS18750 0.21 +1.0 4,203,862 - HGI48_RS18750 0.21 +1.1 4,203,862 - HGI48_RS18750 0.21 +0.9 4,203,862 - HGI48_RS18750 0.21 -1.0 4,203,862 - +1.7 4,203,862 - HGI48_RS18750 0.21 +0.0 4,203,862 - HGI48_RS18750 0.21 -0.3 4,203,862 - HGI48_RS18750 0.21 +1.0 4,203,978 + HGI48_RS18750 0.29 +0.5 4,204,179 + HGI48_RS18750 0.42 +0.7 4,204,179 + HGI48_RS18750 0.42 +0.1 4,204,180 - HGI48_RS18750 0.42 -2.1 4,204,180 - HGI48_RS18750 0.42 -2.7 4,204,180 - HGI48_RS18750 0.42 +1.1 4,204,180 - -1.1 4,204,180 - HGI48_RS18750 0.42 +0.3 4,204,180 - HGI48_RS18750 0.42 -0.8 4,204,331 + HGI48_RS18750 0.52 -1.5 4,204,422 + HGI48_RS18750 0.58 +0.1 4,204,422 + HGI48_RS18750 0.58 -1.1 4,204,423 - +0.5 4,204,423 - HGI48_RS18750 0.58 -1.7 4,204,456 - -0.5 4,204,524 + HGI48_RS18750 0.65 +0.5 4,204,674 + -0.1 4,204,674 + HGI48_RS18750 0.75 +1.0 4,204,674 + +0.5 4,204,675 - HGI48_RS18750 0.75 +0.1 4,204,675 - HGI48_RS18750 0.75 +0.3 4,204,675 - HGI48_RS18750 0.75 +0.1 4,204,675 - HGI48_RS18750 0.75 +1.1 4,204,675 - HGI48_RS18750 0.75 +0.4 4,204,675 - HGI48_RS18750 0.75 -0.1 4,204,675 - HGI48_RS18750 0.75 -0.7 4,204,675 - HGI48_RS18750 0.75 -0.3 4,204,675 - +1.1 4,204,675 - HGI48_RS18750 0.75 -0.2 4,204,676 + HGI48_RS18750 0.75 +1.2 4,204,676 + HGI48_RS18750 0.75 +0.8 4,204,676 + HGI48_RS18750 0.75 +0.8 4,204,676 + HGI48_RS18750 0.75 +0.5 4,204,677 - +2.5 4,204,677 - HGI48_RS18750 0.75 +0.3 4,204,677 - HGI48_RS18750 0.75 -0.6 4,204,677 - HGI48_RS18750 0.75 -0.5 4,204,677 - HGI48_RS18750 0.75 -0.2 4,204,677 - +1.5 4,204,677 - HGI48_RS18750 0.75 +1.0 4,204,677 - HGI48_RS18750 0.75 +0.8 4,204,677 - HGI48_RS18750 0.75 -0.4 4,204,677 - HGI48_RS18750 0.75 +1.3 4,204,716 - HGI48_RS18750 0.77 +1.0 4,204,716 - HGI48_RS18750 0.77 +0.2 4,204,956 - +0.5 4,205,154 + -0.7 4,205,155 - -1.1 4,205,283 + -0.9 4,205,284 - -1.3 4,205,302 + +0.3 4,205,302 + +0.7 4,205,303 - -2.3 4,205,325 - -0.1 4,205,389 + +1.9 4,205,389 + -1.1 4,205,414 - -0.9 4,205,613 + HGI48_RS18755 0.14 -0.3 4,205,613 + HGI48_RS18755 0.14 +0.8 4,205,636 + HGI48_RS18755 0.16 -0.8 4,205,636 + HGI48_RS18755 0.16 +0.2 4,205,726 + HGI48_RS18755 0.22 +1.3 4,205,726 + HGI48_RS18755 0.22 -0.2 4,205,726 + HGI48_RS18755 0.22 +0.9 4,205,727 - HGI48_RS18755 0.22 -0.7 4,205,888 + HGI48_RS18755 0.33 +0.2 4,205,921 + HGI48_RS18755 0.36 -0.5 4,205,921 + HGI48_RS18755 0.36 +0.0 4,205,922 - HGI48_RS18755 0.36 -2.9 4,205,922 - HGI48_RS18755 0.36 +1.4 4,205,922 - HGI48_RS18755 0.36 -1.3 4,205,922 - +1.3 4,205,954 + HGI48_RS18755 0.38 -2.1 4,205,954 + +1.1 4,205,954 + HGI48_RS18755 0.38 +0.4 4,205,954 + HGI48_RS18755 0.38 +0.5 4,205,954 + HGI48_RS18755 0.38 -1.5 4,205,954 + HGI48_RS18755 0.38 -0.1 4,205,954 + HGI48_RS18755 0.38 +0.5 4,205,954 + HGI48_RS18755 0.38 +0.7 4,205,955 - HGI48_RS18755 0.38 -1.6 4,205,955 - HGI48_RS18755 0.38 -1.5 4,205,955 - HGI48_RS18755 0.38 -2.1 4,205,955 - HGI48_RS18755 0.38 -0.2 4,205,955 - HGI48_RS18755 0.38 +2.0 4,205,955 - HGI48_RS18755 0.38 -1.3 4,205,955 - HGI48_RS18755 0.38 -0.2 4,206,041 + HGI48_RS18755 0.44 -0.7 4,206,041 + HGI48_RS18755 0.44 -1.1 4,206,041 + HGI48_RS18755 0.44 -0.1 4,206,041 + HGI48_RS18755 0.44 -1.4 4,206,041 + HGI48_RS18755 0.44 +0.4 4,206,041 + HGI48_RS18755 0.44 +0.3 4,206,041 + HGI48_RS18755 0.44 -2.7 4,206,042 - HGI48_RS18755 0.44 -0.7 4,206,042 - HGI48_RS18755 0.44 -1.8 4,206,042 - HGI48_RS18755 0.44 -0.3 4,206,042 - HGI48_RS18755 0.44 -0.2 4,206,042 - HGI48_RS18755 0.44 +0.0 4,206,042 - HGI48_RS18755 0.44 +2.3
Or see this region's nucleotide sequence