Experiment: PDB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS18735 and HGI48_RS18740 are separated by 71 nucleotides HGI48_RS18740 and HGI48_RS18745 are separated by 118 nucleotides HGI48_RS18745 and HGI48_RS18750 are separated by 151 nucleotides
HGI48_RS18735: HGI48_RS18735 - alpha/beta hydrolase, at 4,201,287 to 4,202,297
_RS18735
HGI48_RS18740: HGI48_RS18740 - organic hydroperoxide resistance protein, at 4,202,369 to 4,202,794
_RS18740
HGI48_RS18745: HGI48_RS18745 - MarR family transcriptional regulator, at 4,202,913 to 4,203,383
_RS18745
HGI48_RS18750: HGI48_RS18750 - p-aminobenzoyl-glutamate transporter, at 4,203,535 to 4,205,058
_RS18750
Position (kb) 4202
4203
4204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4201.998 kb on + strand, within HGI48_RS18735 at 4202.205 kb on + strand at 4202.205 kb on + strand at 4202.205 kb on + strand at 4202.206 kb on - strand at 4202.206 kb on - strand at 4202.206 kb on - strand at 4202.316 kb on + strand at 4202.316 kb on + strand at 4202.317 kb on - strand at 4202.317 kb on - strand at 4202.317 kb on - strand at 4202.345 kb on - strand at 4202.345 kb on - strand at 4202.348 kb on + strand at 4202.349 kb on - strand at 4202.375 kb on - strand at 4202.388 kb on - strand at 4202.388 kb on - strand at 4202.388 kb on - strand at 4202.388 kb on - strand at 4202.388 kb on - strand at 4202.419 kb on - strand, within HGI48_RS18740 at 4202.419 kb on - strand, within HGI48_RS18740 at 4202.772 kb on + strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.773 kb on - strand at 4202.788 kb on + strand at 4202.789 kb on - strand at 4202.789 kb on - strand at 4202.808 kb on + strand at 4202.808 kb on + strand at 4202.808 kb on + strand at 4202.808 kb on + strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.809 kb on - strand at 4202.829 kb on + strand at 4202.869 kb on - strand at 4202.896 kb on + strand at 4202.896 kb on + strand at 4202.896 kb on + strand at 4202.896 kb on + strand at 4202.897 kb on - strand at 4202.897 kb on - strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.918 kb on + strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.919 kb on - strand at 4202.982 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4202.985 kb on - strand, within HGI48_RS18745 at 4203.042 kb on - strand, within HGI48_RS18745 at 4203.042 kb on - strand, within HGI48_RS18745 at 4203.106 kb on - strand, within HGI48_RS18745 at 4203.239 kb on - strand, within HGI48_RS18745 at 4203.239 kb on - strand, within HGI48_RS18745 at 4203.272 kb on - strand, within HGI48_RS18745 at 4203.302 kb on - strand, within HGI48_RS18745 at 4203.365 kb on + strand at 4203.366 kb on - strand at 4203.366 kb on - strand at 4203.366 kb on - strand at 4203.366 kb on - strand at 4203.527 kb on + strand at 4203.528 kb on - strand at 4203.528 kb on - strand at 4203.536 kb on + strand at 4203.536 kb on + strand at 4203.538 kb on + strand at 4203.539 kb on - strand at 4203.539 kb on - strand at 4203.647 kb on + strand at 4203.648 kb on - strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.650 kb on + strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.651 kb on - strand at 4203.678 kb on - strand at 4203.700 kb on + strand, within HGI48_RS18750 at 4203.701 kb on - strand, within HGI48_RS18750 at 4203.701 kb on - strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.861 kb on + strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.862 kb on - strand, within HGI48_RS18750 at 4203.978 kb on + strand, within HGI48_RS18750 at 4204.179 kb on + strand, within HGI48_RS18750 at 4204.179 kb on + strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.180 kb on - strand, within HGI48_RS18750 at 4204.331 kb on + strand, within HGI48_RS18750
Per-strain Table
Position Strand Gene LocusTag Fraction PDB remove 4,201,998 + HGI48_RS18735 0.70 +1.3 4,202,205 + +0.8 4,202,205 + -0.2 4,202,205 + +1.7 4,202,206 - +1.2 4,202,206 - -1.3 4,202,206 - -0.1 4,202,316 + -0.8 4,202,316 + +0.5 4,202,317 - -2.1 4,202,317 - +0.4 4,202,317 - +1.3 4,202,345 - -0.4 4,202,345 - -0.5 4,202,348 + -1.7 4,202,349 - +0.8 4,202,375 - +2.1 4,202,388 - -0.1 4,202,388 - -0.9 4,202,388 - +0.1 4,202,388 - -1.3 4,202,388 - +0.3 4,202,419 - HGI48_RS18740 0.12 +0.8 4,202,419 - HGI48_RS18740 0.12 +1.2 4,202,772 + +0.3 4,202,773 - -2.5 4,202,773 - -0.1 4,202,773 - -1.1 4,202,773 - -1.6 4,202,773 - -1.5 4,202,773 - -1.8 4,202,773 - +0.6 4,202,773 - -0.1 4,202,773 - +0.1 4,202,773 - +0.8 4,202,773 - -0.8 4,202,788 + +1.3 4,202,789 - +0.5 4,202,789 - +0.2 4,202,808 + +0.2 4,202,808 + -0.4 4,202,808 + +1.1 4,202,808 + -0.5 4,202,809 - +2.5 4,202,809 - +0.5 4,202,809 - -2.7 4,202,809 - +0.8 4,202,809 - -1.1 4,202,829 + +0.3 4,202,869 - -0.2 4,202,896 + -0.1 4,202,896 + -1.8 4,202,896 + -0.9 4,202,896 + -0.0 4,202,897 - +0.7 4,202,897 - -0.6 4,202,918 + -0.5 4,202,918 + -1.8 4,202,918 + -1.7 4,202,918 + -0.5 4,202,918 + -0.2 4,202,918 + -0.3 4,202,918 + +1.0 4,202,919 - +1.8 4,202,919 - +1.5 4,202,919 - -0.5 4,202,919 - +0.7 4,202,919 - -0.5 4,202,982 - HGI48_RS18745 0.15 +1.0 4,202,985 - HGI48_RS18745 0.15 -0.7 4,202,985 - HGI48_RS18745 0.15 -2.8 4,202,985 - HGI48_RS18745 0.15 -0.9 4,202,985 - HGI48_RS18745 0.15 -0.9 4,202,985 - HGI48_RS18745 0.15 +0.3 4,202,985 - HGI48_RS18745 0.15 +1.9 4,203,042 - HGI48_RS18745 0.27 -0.7 4,203,042 - HGI48_RS18745 0.27 +2.0 4,203,106 - HGI48_RS18745 0.41 -1.3 4,203,239 - HGI48_RS18745 0.69 +0.8 4,203,239 - HGI48_RS18745 0.69 +1.4 4,203,272 - HGI48_RS18745 0.76 +0.3 4,203,302 - HGI48_RS18745 0.83 +0.3 4,203,365 + -0.2 4,203,366 - -3.1 4,203,366 - -1.8 4,203,366 - +1.5 4,203,366 - -1.3 4,203,527 + -0.1 4,203,528 - -1.5 4,203,528 - -1.5 4,203,536 + +1.0 4,203,536 + +1.0 4,203,538 + -0.5 4,203,539 - -1.5 4,203,539 - +0.2 4,203,647 + -0.4 4,203,648 - +0.8 4,203,650 + -1.9 4,203,650 + -0.2 4,203,650 + +0.9 4,203,650 + -0.6 4,203,650 + -0.4 4,203,650 + +1.1 4,203,651 - -0.8 4,203,651 - -0.7 4,203,651 - -0.1 4,203,651 - -2.7 4,203,651 - +0.3 4,203,651 - +0.7 4,203,651 - -1.2 4,203,651 - +0.5 4,203,651 - +0.9 4,203,678 - +1.8 4,203,700 + HGI48_RS18750 0.11 +0.3 4,203,701 - HGI48_RS18750 0.11 -0.4 4,203,701 - HGI48_RS18750 0.11 -2.9 4,203,861 + HGI48_RS18750 0.21 -0.8 4,203,861 + HGI48_RS18750 0.21 +1.0 4,203,861 + HGI48_RS18750 0.21 -0.8 4,203,861 + HGI48_RS18750 0.21 +0.3 4,203,861 + HGI48_RS18750 0.21 +0.5 4,203,861 + HGI48_RS18750 0.21 -2.1 4,203,861 + HGI48_RS18750 0.21 -0.4 4,203,862 - HGI48_RS18750 0.21 +1.0 4,203,862 - HGI48_RS18750 0.21 +1.1 4,203,862 - HGI48_RS18750 0.21 +0.9 4,203,862 - HGI48_RS18750 0.21 -1.0 4,203,862 - +1.7 4,203,862 - HGI48_RS18750 0.21 +0.0 4,203,862 - HGI48_RS18750 0.21 -0.3 4,203,862 - HGI48_RS18750 0.21 +1.0 4,203,978 + HGI48_RS18750 0.29 +0.5 4,204,179 + HGI48_RS18750 0.42 +0.7 4,204,179 + HGI48_RS18750 0.42 +0.1 4,204,180 - HGI48_RS18750 0.42 -2.1 4,204,180 - HGI48_RS18750 0.42 -2.7 4,204,180 - HGI48_RS18750 0.42 +1.1 4,204,180 - -1.1 4,204,180 - HGI48_RS18750 0.42 +0.3 4,204,180 - HGI48_RS18750 0.42 -0.8 4,204,331 + HGI48_RS18750 0.52 -1.5
Or see this region's nucleotide sequence