Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17245

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,865,733	+		HGI48_RS17240	0.56	-0.6
3,865,733	+		HGI48_RS17240	0.56	-1.9
3,865,733	+		HGI48_RS17240	0.56	+0.3
3,865,733	+		HGI48_RS17240	0.56	+0.0
3,865,734	-		HGI48_RS17240	0.56	-0.3
3,865,734	-		HGI48_RS17240	0.56	-0.6
3,865,734	-				-1.1
3,865,734	-		HGI48_RS17240	0.56	-1.9
3,865,734	-		HGI48_RS17240	0.56	-0.9
3,865,734	-		HGI48_RS17240	0.56	-0.9
3,865,734	-		HGI48_RS17240	0.56	+0.3
3,865,734	-		HGI48_RS17240	0.56	-2.1
3,865,734	-		HGI48_RS17240	0.56	-1.9
3,865,734	-		HGI48_RS17240	0.56	-0.6
3,865,777	-		HGI48_RS17240	0.58	+0.6
3,865,799	+		HGI48_RS17240	0.59	-0.2
3,865,799	+		HGI48_RS17240	0.59	-0.6
3,865,904	+		HGI48_RS17240	0.65	-0.3
3,865,904	+				+1.2
3,865,904	+		HGI48_RS17240	0.65	-0.8
3,865,905	-		HGI48_RS17240	0.65	-1.9
3,865,905	-		HGI48_RS17240	0.65	-0.4
3,865,905	-		HGI48_RS17240	0.65	-1.6
3,865,955	+				+1.9
3,865,955	+		HGI48_RS17240	0.67	+0.0
3,865,955	+				+2.0
3,865,956	-		HGI48_RS17240	0.68	-2.7
3,865,962	-		HGI48_RS17240	0.68	+1.0
3,865,991	-		HGI48_RS17240	0.69	-3.1
3,865,991	-		HGI48_RS17240	0.69	+0.6
3,866,103	-		HGI48_RS17240	0.75	+1.2
3,866,104	+		HGI48_RS17240	0.75	-2.6
3,866,105	-		HGI48_RS17240	0.75	+1.1
3,866,105	-		HGI48_RS17240	0.75	-2.6
3,866,132	+		HGI48_RS17240	0.77	+0.0
3,866,133	-		HGI48_RS17240	0.77	+1.0
3,866,133	-		HGI48_RS17240	0.77	-1.0
3,866,139	+		HGI48_RS17240	0.77	-0.1
3,866,140	-		HGI48_RS17240	0.77	-2.1
3,866,233	+		HGI48_RS17240	0.82	-0.6
3,866,273	+		HGI48_RS17240	0.84	-1.9
3,866,273	+		HGI48_RS17240	0.84	+0.7
3,866,274	-		HGI48_RS17240	0.84	+0.2
3,866,363	+		HGI48_RS17240	0.88	-0.6
3,866,363	+		HGI48_RS17240	0.88	-2.9
3,866,363	+		HGI48_RS17240	0.88	-1.1
3,866,364	-				-0.6
3,866,364	-		HGI48_RS17240	0.88	+0.2
3,866,397	+				-0.1
3,866,397	+				+0.1
3,866,585	+				+0.4
3,866,585	+				+1.1
3,866,588	+				+1.4
3,866,588	+				-0.9
3,866,642	+				+0.4
3,866,642	+				+0.7
3,866,643	-				+0.9
3,866,653	-				+0.4
3,866,658	+				+0.4
3,866,659	-				+1.1
3,866,659	-				-0.7
3,866,662	+				-1.4
3,866,662	+				+0.7
3,866,662	+				+1.4
3,866,662	+				-1.1
3,867,037	+		HGI48_RS17245	0.47	-0.4
3,867,037	+		HGI48_RS17245	0.47	+0.0
3,867,037	+		HGI48_RS17245	0.47	+1.1
3,867,047	+		HGI48_RS17245	0.48	+1.0
3,867,048	-		HGI48_RS17245	0.49	-2.1
3,867,297	+		HGI48_RS17245	0.86	+0.7
3,867,297	+		HGI48_RS17245	0.86	-0.8
3,867,297	+		HGI48_RS17245	0.86	-1.1
3,867,298	-		HGI48_RS17245	0.86	-1.1
3,867,298	-				-1.1
3,867,298	-		HGI48_RS17245	0.86	-0.0
3,867,387	+				-1.9
3,867,408	+				-2.4
3,867,408	+				+0.1
3,867,408	+				-0.1
3,867,409	-				+0.7
3,867,409	-				-1.1
3,867,409	-				+1.9
3,867,418	+				+1.6
3,867,418	+				+2.4
3,867,427	-				+0.8
3,867,491	+				+0.2
3,867,492	-				-0.3
3,867,501	+				-1.9
3,867,586	+		HGI48_RS17250	0.22	-0.1
3,867,586	+		HGI48_RS17250	0.22	+0.1
3,867,586	+		HGI48_RS17250	0.22	-2.1
3,867,606	+		HGI48_RS17250	0.27	-1.6
3,867,606	+		HGI48_RS17250	0.27	-3.5
3,867,606	+		HGI48_RS17250	0.27	-0.2
3,867,606	+		HGI48_RS17250	0.27	+1.0
3,867,607	-		HGI48_RS17250	0.27	-1.6
3,867,607	-		HGI48_RS17250	0.27	-0.7
3,867,643	+		HGI48_RS17250	0.37	-0.1
3,867,643	+		HGI48_RS17250	0.37	+0.4
3,867,643	+		HGI48_RS17250	0.37	+1.3
3,867,649	+		HGI48_RS17250	0.39	+1.3
3,867,650	-		HGI48_RS17250	0.39	-1.6
3,867,650	-		HGI48_RS17250	0.39	+0.4
3,867,650	-		HGI48_RS17250	0.39	+0.1
3,867,650	-		HGI48_RS17250	0.39	+1.6
3,867,652	+		HGI48_RS17250	0.40	+1.4
3,867,652	+		HGI48_RS17250	0.40	-0.2
3,867,652	+		HGI48_RS17250	0.40	-0.5
3,867,653	-		HGI48_RS17250	0.40	-0.9
3,867,653	-		HGI48_RS17250	0.40	+0.9
3,867,662	-		HGI48_RS17250	0.42	-1.6
3,867,662	-		HGI48_RS17250	0.42	+0.3
3,867,736	+		HGI48_RS17250	0.63	+0.0
3,867,736	+		HGI48_RS17250	0.63	-0.2
3,867,770	-		HGI48_RS17250	0.72	-1.6
3,867,770	-		HGI48_RS17250	0.72	-2.4
3,867,832	-		HGI48_RS17250	0.89	-0.6
3,867,832	-		HGI48_RS17250	0.89	-0.9
3,867,840	+				-0.4
3,867,840	+				+1.4
3,867,840	+				+0.4
3,867,842	+				+1.2
3,867,842	+				+0.0
3,867,843	-				-0.7
3,867,845	+				-0.7
3,867,845	+				-1.6
3,867,845	+				-0.6
3,867,846	-				-0.8
3,867,846	-				-1.7
3,867,846	-				+0.4
3,867,846	-				-1.1
3,867,846	-				-1.9
3,867,846	-				+0.8
3,867,856	-				-2.4
3,867,856	-				+0.3
3,867,867	-				+0.2
3,867,878	+				+0.4
3,867,916	+				-0.7
3,867,916	+				-0.5
3,867,916	+				-0.3
3,867,916	+				-2.4
3,867,917	-				-0.0
3,867,917	-				+2.8
3,867,917	-				-1.9
3,867,917	-				+0.6
3,867,919	-				-3.1
3,867,919	-				+2.0
3,867,959	+				+0.1
3,867,959	+				-1.1
3,867,960	-				-0.9
3,867,962	+				-0.1
3,867,965	+				-1.7
3,867,966	-				-0.3
3,867,980	-				-1.2
3,868,014	+				+0.2
3,868,014	+				+0.1
3,868,014	+				+0.7
3,868,015	-				-0.3
3,868,015	-				+0.0
3,868,122	+				-0.0
3,868,159	+				-2.3
3,868,159	+				-0.1
3,868,159	+				+0.4
3,868,160	-				+0.1
3,868,160	-				-0.2
3,868,219	+		HGI48_RS17255	0.16	-0.2
3,868,219	+		HGI48_RS17255	0.16	+0.8
3,868,219	+		HGI48_RS17255	0.16	+0.4
3,868,219	+		HGI48_RS17255	0.16	+0.2
3,868,220	-		HGI48_RS17255	0.16	+0.2
3,868,221	+		HGI48_RS17255	0.16	-0.6
3,868,221	+		HGI48_RS17255	0.16	-0.0
3,868,221	+		HGI48_RS17255	0.16	+0.6
3,868,221	+		HGI48_RS17255	0.16	+0.0
3,868,221	+				+0.9
3,868,221	+		HGI48_RS17255	0.16	-0.3
3,868,222	-		HGI48_RS17255	0.16	+0.0
3,868,222	-		HGI48_RS17255	0.16	+0.6
3,868,222	-		HGI48_RS17255	0.16	+0.3
3,868,222	-		HGI48_RS17255	0.16	-1.1
3,868,362	+		HGI48_RS17255	0.39	+0.8
3,868,362	+		HGI48_RS17255	0.39	-0.2
3,868,363	-		HGI48_RS17255	0.39	-0.2
3,868,363	-		HGI48_RS17255	0.39	-1.9