Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17240

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,863,717	+				-0.1
3,863,717	+				+0.8
3,863,717	+				-1.1
3,863,718	-				+1.2
3,863,718	-				-0.2
3,863,718	-				+1.1
3,863,910	-		HGI48_RS17235	0.33	-1.9
3,863,948	-		HGI48_RS17235	0.38	-1.4
3,864,035	+		HGI48_RS17235	0.50	+0.9
3,864,035	+				-1.1
3,864,036	-		HGI48_RS17235	0.50	-0.0
3,864,059	+		HGI48_RS17235	0.53	+0.4
3,864,102	+				+2.0
3,864,315	+		HGI48_RS17235	0.88	+0.6
3,864,346	-				+1.0
3,864,347	+				+2.0
3,864,347	+				+0.1
3,864,347	+				+0.8
3,864,348	-				+1.0
3,864,348	-				-1.1
3,864,348	-				-1.1
3,864,400	+				+1.6
3,864,400	+				+0.9
3,864,401	-				+0.7
3,864,419	+				-1.6
3,864,419	+				+2.1
3,864,419	+				-1.0
3,864,419	+				-0.1
3,864,419	+				-0.0
3,864,421	+				+1.5
3,864,421	+				+0.3
3,864,421	+				-1.6
3,864,421	+				-0.4
3,864,421	+				+0.7
3,864,421	+				+0.9
3,864,421	+				-2.0
3,864,421	+				-0.6
3,864,422	-				-1.4
3,864,422	-				-0.6
3,864,422	-				+0.2
3,864,422	-				-3.1
3,864,422	-				-1.0
3,864,422	-				-2.1
3,864,422	-				-1.6
3,864,425	+				+0.4
3,864,426	-				-1.0
3,864,426	-				-1.0
3,864,426	-				+1.1
3,864,493	+				-2.7
3,864,494	-				-0.4
3,864,520	+				+0.4
3,864,532	+				-0.6
3,864,574	+				+1.2
3,864,574	+				-0.1
3,864,575	-				+1.1
3,864,575	-				-0.8
3,864,575	-				+1.1
3,864,575	-				-0.4
3,864,576	+				+0.4
3,864,576	+				-0.1
3,864,577	-				+0.7
3,864,577	-				+2.6
3,864,577	-				+1.0
3,864,577	-				+0.0
3,864,577	-				+0.4
3,864,618	-				+0.4
3,864,640	+				+0.7
3,864,641	-				+0.4
3,864,649	+				+0.8
3,864,649	+				-1.6
3,864,649	+				-0.1
3,864,649	+				-1.0
3,864,650	-				-0.1
3,864,650	-				-1.0
3,864,650	-				+0.0
3,864,748	+				+0.2
3,864,748	+				+0.4
3,864,748	+				+0.1
3,864,748	+				-1.1
3,864,749	-				+1.6
3,864,749	-				+1.3
3,864,749	-				-1.7
3,864,749	-				-0.2
3,864,758	+				+0.4
3,864,758	+				-0.1
3,864,758	+				-0.1
3,864,758	+				-1.6
3,864,759	-				+1.0
3,864,764	+				-0.9
3,864,765	-				-0.9
3,864,765	-				+1.6
3,864,767	+				-0.4
3,864,767	+				+0.0
3,864,767	+				-1.1
3,864,767	+				-0.8
3,864,768	-				-2.1
3,864,768	-				+1.4
3,864,768	-				-1.6
3,864,768	-				-0.9
3,864,768	-				+1.0
3,864,769	+				-1.9
3,864,769	+				+0.2
3,864,770	-				-2.1
3,864,874	+		HGI48_RS17240	0.12	-1.7
3,864,875	-		HGI48_RS17240	0.12	-3.1
3,864,899	+		HGI48_RS17240	0.13	-3.0
3,864,899	+		HGI48_RS17240	0.13	+0.1
3,864,900	-		HGI48_RS17240	0.13	+0.8
3,864,900	-		HGI48_RS17240	0.13	-0.0
3,864,933	+		HGI48_RS17240	0.15	+0.8
3,864,934	-				-0.6
3,864,934	-		HGI48_RS17240	0.15	-0.1
3,864,934	-		HGI48_RS17240	0.15	-2.7
3,864,934	-		HGI48_RS17240	0.15	-2.1
3,864,944	+		HGI48_RS17240	0.16	-0.0
3,864,945	-		HGI48_RS17240	0.16	+2.2
3,865,016	+		HGI48_RS17240	0.19	+0.4
3,865,055	-				+0.9
3,865,106	+		HGI48_RS17240	0.24	-0.7
3,865,169	+				+0.4
3,865,269	+		HGI48_RS17240	0.32	+0.4
3,865,367	+		HGI48_RS17240	0.37	+0.6
3,865,367	+		HGI48_RS17240	0.37	-0.7
3,865,370	+				-1.1
3,865,370	+		HGI48_RS17240	0.37	-0.8
3,865,371	-		HGI48_RS17240	0.37	+2.1
3,865,371	-				-1.1
3,865,374	+				-0.6
3,865,374	+		HGI48_RS17240	0.38	+1.2
3,865,375	-		HGI48_RS17240	0.38	+1.2
3,865,402	+		HGI48_RS17240	0.39	+1.6
3,865,402	+				+1.4
3,865,607	+		HGI48_RS17240	0.50	+0.1
3,865,702	+		HGI48_RS17240	0.54	+1.7
3,865,702	+		HGI48_RS17240	0.54	+1.2
3,865,703	-		HGI48_RS17240	0.55	-0.0
3,865,703	-		HGI48_RS17240	0.55	-2.4
3,865,733	+		HGI48_RS17240	0.56	-0.6
3,865,733	+		HGI48_RS17240	0.56	-1.9
3,865,733	+		HGI48_RS17240	0.56	+0.3
3,865,733	+		HGI48_RS17240	0.56	+0.0
3,865,734	-		HGI48_RS17240	0.56	-0.3
3,865,734	-		HGI48_RS17240	0.56	-0.6
3,865,734	-				-1.1
3,865,734	-		HGI48_RS17240	0.56	-1.9
3,865,734	-		HGI48_RS17240	0.56	-0.9
3,865,734	-		HGI48_RS17240	0.56	-0.9
3,865,734	-		HGI48_RS17240	0.56	+0.3
3,865,734	-		HGI48_RS17240	0.56	-2.1
3,865,734	-		HGI48_RS17240	0.56	-1.9
3,865,734	-		HGI48_RS17240	0.56	-0.6
3,865,777	-		HGI48_RS17240	0.58	+0.6
3,865,799	+		HGI48_RS17240	0.59	-0.2
3,865,799	+		HGI48_RS17240	0.59	-0.6
3,865,904	+		HGI48_RS17240	0.65	-0.3
3,865,904	+				+1.2
3,865,904	+		HGI48_RS17240	0.65	-0.8
3,865,905	-		HGI48_RS17240	0.65	-1.9
3,865,905	-		HGI48_RS17240	0.65	-0.4
3,865,905	-		HGI48_RS17240	0.65	-1.6
3,865,955	+				+1.9
3,865,955	+		HGI48_RS17240	0.67	+0.0
3,865,955	+				+2.0
3,865,956	-		HGI48_RS17240	0.68	-2.7
3,865,962	-		HGI48_RS17240	0.68	+1.0
3,865,991	-		HGI48_RS17240	0.69	-3.1
3,865,991	-		HGI48_RS17240	0.69	+0.6
3,866,103	-		HGI48_RS17240	0.75	+1.2
3,866,104	+		HGI48_RS17240	0.75	-2.6
3,866,105	-		HGI48_RS17240	0.75	+1.1
3,866,105	-		HGI48_RS17240	0.75	-2.6
3,866,132	+		HGI48_RS17240	0.77	+0.0
3,866,133	-		HGI48_RS17240	0.77	+1.0
3,866,133	-		HGI48_RS17240	0.77	-1.0
3,866,139	+		HGI48_RS17240	0.77	-0.1
3,866,140	-		HGI48_RS17240	0.77	-2.1
3,866,233	+		HGI48_RS17240	0.82	-0.6
3,866,273	+		HGI48_RS17240	0.84	-1.9
3,866,273	+		HGI48_RS17240	0.84	+0.7
3,866,274	-		HGI48_RS17240	0.84	+0.2
3,866,363	+		HGI48_RS17240	0.88	-0.6
3,866,363	+		HGI48_RS17240	0.88	-2.9
3,866,363	+		HGI48_RS17240	0.88	-1.1
3,866,364	-				-0.6
3,866,364	-		HGI48_RS17240	0.88	+0.2
3,866,397	+				-0.1
3,866,397	+				+0.1
3,866,585	+				+0.4
3,866,585	+				+1.1
3,866,588	+				+1.4
3,866,588	+				-0.9
3,866,642	+				+0.4
3,866,642	+				+0.7
3,866,643	-				+0.9
3,866,653	-				+0.4
3,866,658	+				+0.4
3,866,659	-				+1.1
3,866,659	-				-0.7
3,866,662	+				-1.4
3,866,662	+				+0.7
3,866,662	+				+1.4
3,866,662	+				-1.1
3,867,037	+		HGI48_RS17245	0.47	-0.4
3,867,037	+		HGI48_RS17245	0.47	+0.0
3,867,037	+		HGI48_RS17245	0.47	+1.1
3,867,047	+		HGI48_RS17245	0.48	+1.0
3,867,048	-		HGI48_RS17245	0.49	-2.1
3,867,297	+		HGI48_RS17245	0.86	+0.7
3,867,297	+		HGI48_RS17245	0.86	-0.8
3,867,297	+		HGI48_RS17245	0.86	-1.1
3,867,298	-		HGI48_RS17245	0.86	-1.1
3,867,298	-				-1.1
3,867,298	-		HGI48_RS17245	0.86	-0.0
3,867,387	+				-1.9
3,867,408	+				-2.4
3,867,408	+				+0.1
3,867,408	+				-0.1
3,867,409	-				+0.7
3,867,409	-				-1.1
3,867,409	-				+1.9
3,867,418	+				+1.6
3,867,418	+				+2.4
3,867,427	-				+0.8
3,867,491	+				+0.2
3,867,492	-				-0.3
3,867,501	+				-1.9
3,867,586	+		HGI48_RS17250	0.22	-0.1
3,867,586	+		HGI48_RS17250	0.22	+0.1
3,867,586	+		HGI48_RS17250	0.22	-2.1