Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17075

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,821,115	+				+0.4
3,821,115	+		HGI48_RS17070	0.58	+1.3
3,821,115	+		HGI48_RS17070	0.58	-0.7
3,821,115	+		HGI48_RS17070	0.58	-0.8
3,821,115	+		HGI48_RS17070	0.58	-0.3
3,821,115	+		HGI48_RS17070	0.58	+1.6
3,821,115	+		HGI48_RS17070	0.58	+1.3
3,821,115	+				+3.2
3,821,116	-		HGI48_RS17070	0.59	-2.4
3,821,116	-		HGI48_RS17070	0.59	-1.4
3,821,116	-		HGI48_RS17070	0.59	+0.2
3,821,116	-		HGI48_RS17070	0.59	-0.3
3,821,116	-		HGI48_RS17070	0.59	+1.3
3,821,116	-		HGI48_RS17070	0.59	-1.6
3,821,116	-		HGI48_RS17070	0.59	+1.2
3,821,116	-		HGI48_RS17070	0.59	+1.9
3,821,152	+		HGI48_RS17070	0.60	+1.4
3,821,152	+		HGI48_RS17070	0.60	+1.4
3,821,176	-		HGI48_RS17070	0.61	+0.6
3,821,176	-		HGI48_RS17070	0.61	+1.9
3,821,176	-		HGI48_RS17070	0.61	+1.1
3,821,203	+		HGI48_RS17070	0.62	+1.3
3,821,204	-		HGI48_RS17070	0.62	+0.6
3,821,274	+		HGI48_RS17070	0.66	+1.0
3,821,274	+				-1.2
3,821,274	+				-0.6
3,821,274	+		HGI48_RS17070	0.66	-1.5
3,821,275	-		HGI48_RS17070	0.66	+0.1
3,821,275	-		HGI48_RS17070	0.66	+0.2
3,821,275	-		HGI48_RS17070	0.66	-0.1
3,821,275	-		HGI48_RS17070	0.66	+0.7
3,821,275	-		HGI48_RS17070	0.66	+1.6
3,821,295	+		HGI48_RS17070	0.67	-0.9
3,821,295	+		HGI48_RS17070	0.67	+0.9
3,821,295	+		HGI48_RS17070	0.67	-1.4
3,821,296	-		HGI48_RS17070	0.67	-1.0
3,821,361	+		HGI48_RS17070	0.69	+0.8
3,821,361	+		HGI48_RS17070	0.69	-1.6
3,821,361	+		HGI48_RS17070	0.69	-2.7
3,821,362	-		HGI48_RS17070	0.70	-0.3
3,821,362	-		HGI48_RS17070	0.70	-2.4
3,821,362	-		HGI48_RS17070	0.70	-2.2
3,821,362	-		HGI48_RS17070	0.70	+1.2
3,821,362	-		HGI48_RS17070	0.70	+2.1
3,821,362	-		HGI48_RS17070	0.70	-1.2
3,821,362	-		HGI48_RS17070	0.70	+1.5
3,821,362	-		HGI48_RS17070	0.70	-2.6
3,821,412	+		HGI48_RS17070	0.72	+2.7
3,821,413	-		HGI48_RS17070	0.72	+0.2
3,821,499	+		HGI48_RS17070	0.76	+0.4
3,821,499	+		HGI48_RS17070	0.76	+1.0
3,821,499	+		HGI48_RS17070	0.76	-0.4
3,821,499	+		HGI48_RS17070	0.76	-2.2
3,821,499	+		HGI48_RS17070	0.76	+0.7
3,821,499	+		HGI48_RS17070	0.76	+1.0
3,821,499	+		HGI48_RS17070	0.76	+0.6
3,821,499	+		HGI48_RS17070	0.76	-2.4
3,821,500	-		HGI48_RS17070	0.76	-0.2
3,821,500	-				+1.6
3,821,500	-		HGI48_RS17070	0.76	-2.4
3,821,500	-		HGI48_RS17070	0.76	+0.9
3,821,500	-		HGI48_RS17070	0.76	+1.6
3,821,500	-		HGI48_RS17070	0.76	+0.6
3,821,503	+		HGI48_RS17070	0.76	-0.6
3,821,503	+		HGI48_RS17070	0.76	+1.1
3,821,503	+		HGI48_RS17070	0.76	-1.9
3,821,503	+		HGI48_RS17070	0.76	+0.6
3,821,503	+				-0.6
3,821,504	-		HGI48_RS17070	0.76	-0.9
3,821,504	-		HGI48_RS17070	0.76	+0.7
3,821,504	-		HGI48_RS17070	0.76	+0.4
3,821,504	-		HGI48_RS17070	0.76	+0.4
3,821,504	-		HGI48_RS17070	0.76	+1.2
3,821,504	-		HGI48_RS17070	0.76	+0.0
3,821,509	+		HGI48_RS17070	0.76	+1.1
3,821,510	-		HGI48_RS17070	0.76	-0.2
3,821,510	-		HGI48_RS17070	0.76	+1.2
3,821,510	-		HGI48_RS17070	0.76	-0.8
3,821,576	-		HGI48_RS17070	0.79	-0.4
3,821,576	-		HGI48_RS17070	0.79	-0.3
3,821,633	-		HGI48_RS17070	0.82	+0.8
3,821,633	-		HGI48_RS17070	0.82	+1.2
3,821,633	-		HGI48_RS17070	0.82	+0.6
3,821,686	+		HGI48_RS17070	0.84	-0.4
3,821,687	-				-1.2
3,821,687	-		HGI48_RS17070	0.84	+0.4
3,821,687	-				+2.0
3,821,708	-		HGI48_RS17070	0.85	-0.2
3,821,731	+		HGI48_RS17070	0.86	+0.4
3,821,731	+		HGI48_RS17070	0.86	-1.9
3,821,732	-		HGI48_RS17070	0.86	+1.1
3,821,732	-		HGI48_RS17070	0.86	-0.8
3,821,732	-				+0.4
3,821,959	+				-0.2
3,821,960	-				+3.8
3,822,043	+				+0.4
3,822,043	+				+1.2
3,822,043	+				+0.2
3,822,043	+				+1.0
3,822,044	-				-1.2
3,822,054	+				+0.4
3,822,054	+				-1.9
3,822,055	-				+0.4
3,822,112	+				+1.0
3,822,124	+				-1.2
3,822,124	+				-1.4
3,822,124	+				-0.6
3,822,125	-				-2.1
3,822,209	+		HGI48_RS17075	0.11	-2.6
3,822,209	+		HGI48_RS17075	0.11	+0.0
3,822,209	+		HGI48_RS17075	0.11	+1.4
3,822,209	+		HGI48_RS17075	0.11	-1.4
3,822,209	+		HGI48_RS17075	0.11	-1.2
3,822,209	+		HGI48_RS17075	0.11	-1.7
3,822,210	-		HGI48_RS17075	0.11	+1.4
3,822,210	-		HGI48_RS17075	0.11	+0.7
3,822,210	-		HGI48_RS17075	0.11	+0.6
3,822,211	+		HGI48_RS17075	0.12	+0.0
3,822,211	+		HGI48_RS17075	0.12	+0.7
3,822,211	+		HGI48_RS17075	0.12	-0.9
3,822,211	+		HGI48_RS17075	0.12	-2.2
3,822,211	+		HGI48_RS17075	0.12	-0.7
3,822,211	+		HGI48_RS17075	0.12	-2.6
3,822,211	+		HGI48_RS17075	0.12	-0.2
3,822,211	+		HGI48_RS17075	0.12	-1.6
3,822,211	+		HGI48_RS17075	0.12	+0.9
3,822,211	+		HGI48_RS17075	0.12	-1.1
3,822,211	+		HGI48_RS17075	0.12	-0.7
3,822,211	+		HGI48_RS17075	0.12	+0.4
3,822,211	+				+0.8
3,822,211	+		HGI48_RS17075	0.12	+0.3
3,822,211	+		HGI48_RS17075	0.12	+0.3
3,822,211	+				+1.0
3,822,211	+		HGI48_RS17075	0.12	+0.5
3,822,211	+		HGI48_RS17075	0.12	+0.3
3,822,211	+		HGI48_RS17075	0.12	+0.4
3,822,212	-		HGI48_RS17075	0.12	+0.0
3,822,212	-		HGI48_RS17075	0.12	+1.0
3,822,212	-		HGI48_RS17075	0.12	-0.8
3,822,212	-				+1.4
3,822,213	+		HGI48_RS17075	0.12	-1.4
3,822,213	+		HGI48_RS17075	0.12	-1.2
3,822,213	+		HGI48_RS17075	0.12	-2.4
3,822,213	+		HGI48_RS17075	0.12	-2.4
3,822,213	+		HGI48_RS17075	0.12	-4.2
3,822,213	+		HGI48_RS17075	0.12	+1.2
3,822,213	+		HGI48_RS17075	0.12	+1.8
3,822,213	+		HGI48_RS17075	0.12	-1.4
3,822,213	+		HGI48_RS17075	0.12	-2.6
3,822,213	+		HGI48_RS17075	0.12	+2.0
3,822,213	+				-0.2
3,822,213	+		HGI48_RS17075	0.12	-0.3
3,822,214	-		HGI48_RS17075	0.12	+0.8
3,822,214	-		HGI48_RS17075	0.12	+0.0
3,822,214	-				-1.2
3,822,214	-		HGI48_RS17075	0.12	-2.6
3,822,214	-		HGI48_RS17075	0.12	-0.4
3,822,214	-		HGI48_RS17075	0.12	-1.7
3,822,214	-		HGI48_RS17075	0.12	+0.7
3,822,214	-		HGI48_RS17075	0.12	-1.6
3,822,214	-		HGI48_RS17075	0.12	-0.1
3,822,214	-		HGI48_RS17075	0.12	+1.1
3,822,214	-		HGI48_RS17075	0.12	+0.4
3,822,290	+				+0.8
3,822,290	+		HGI48_RS17075	0.17	+1.6
3,822,291	-				+1.8
3,822,291	-		HGI48_RS17075	0.17	-0.9
3,822,291	-		HGI48_RS17075	0.17	-1.9
3,822,354	+		HGI48_RS17075	0.22	-0.2
3,822,354	+		HGI48_RS17075	0.22	-0.7
3,822,355	-		HGI48_RS17075	0.22	+0.0
3,822,595	+		HGI48_RS17075	0.40	+1.1
3,822,698	+		HGI48_RS17075	0.47	-0.6
3,822,996	+		HGI48_RS17075	0.69	-1.2
3,822,996	+		HGI48_RS17075	0.69	-0.1
3,822,996	+		HGI48_RS17075	0.69	-1.6
3,822,996	+		HGI48_RS17075	0.69	+2.1
3,822,996	+		HGI48_RS17075	0.69	-0.3
3,822,999	+		HGI48_RS17075	0.69	-0.9
3,822,999	+		HGI48_RS17075	0.69	-0.3
3,822,999	+		HGI48_RS17075	0.69	-2.6
3,822,999	+		HGI48_RS17075	0.69	-1.9
3,822,999	+		HGI48_RS17075	0.69	-0.8
3,822,999	+		HGI48_RS17075	0.69	-1.6
3,822,999	+		HGI48_RS17075	0.69	+0.7
3,822,999	+		HGI48_RS17075	0.69	-1.0
3,823,000	-		HGI48_RS17075	0.69	+1.1
3,823,000	-		HGI48_RS17075	0.69	+1.5
3,823,000	-		HGI48_RS17075	0.69	+0.3
3,823,001	+		HGI48_RS17075	0.69	+2.0
3,823,002	-		HGI48_RS17075	0.69	-0.2
3,823,002	-		HGI48_RS17075	0.69	-0.3
3,823,002	-		HGI48_RS17075	0.69	+1.9
3,823,032	+		HGI48_RS17075	0.71	-0.6
3,823,331	+				+0.6
3,823,410	+				-0.1
3,823,410	+				-3.2
3,823,423	+				-0.1
3,823,423	+				-0.2
3,823,423	+				+0.7
3,823,423	+				+0.1
3,823,423	+				-1.7
3,823,424	-				-1.2
3,823,424	-				-1.0
3,823,424	-				-0.7
3,823,424	-				+2.1
3,823,443	+				-1.2
3,823,493	+				-0.4
3,823,493	+				-1.4
3,823,493	+				-1.3
3,823,493	+				-1.3
3,823,494	-				+3.4
3,823,510	+				+0.9
3,823,510	+				+1.9
3,823,510	+				-0.6
3,823,510	+				+3.1
3,823,510	+				+0.2
3,823,510	+				+2.7
3,823,510	+				-0.8
3,823,511	-				+1.6
3,823,511	-				+2.4
3,823,511	-				+3.5
3,823,511	-				+2.8
3,823,511	-				+4.4
3,823,511	-				+2.2
3,823,511	-				+2.9
3,823,561	+				+1.4
3,823,586	-				+2.4
3,823,625	-				+2.5
3,823,655	+				+0.0
3,823,655	+				+0.3
3,823,656	-				-0.6
3,823,702	+				-1.2
3,823,702	+				+2.0
3,823,702	+				+2.6
3,823,702	+				+1.0
3,823,702	+				+2.1
3,823,703	-				+2.9
3,823,703	-				+2.5
3,823,703	-				+2.8
3,823,703	-				+1.3
3,823,703	-				+1.7
3,823,703	-				-0.9
3,823,949	+		HGI48_RS17080	0.17	-1.0
3,823,950	-		HGI48_RS17080	0.17	+1.1
3,823,950	-		HGI48_RS17080	0.17	+3.0
3,823,950	-		HGI48_RS17080	0.17	+1.2
3,824,061	-		HGI48_RS17080	0.21	+2.2
3,824,261	+				+1.6
3,824,261	+		HGI48_RS17080	0.28	+1.5
3,824,261	+		HGI48_RS17080	0.28	+2.0
3,824,261	+		HGI48_RS17080	0.28	-0.6
3,824,261	+		HGI48_RS17080	0.28	+0.1
3,824,261	+		HGI48_RS17080	0.28	+2.3
3,824,261	+				+2.0
3,824,261	+		HGI48_RS17080	0.28	+0.0
3,824,261	+		HGI48_RS17080	0.28	+1.0
3,824,261	+		HGI48_RS17080	0.28	+1.1
3,824,262	-		HGI48_RS17080	0.28	+1.0
3,824,262	-		HGI48_RS17080	0.28	+1.7
3,824,262	-		HGI48_RS17080	0.28	+2.4
3,824,262	-		HGI48_RS17080	0.28	+0.1
3,824,262	-		HGI48_RS17080	0.28	+0.7