Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16645

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,728,480	+		HGI48_RS16640	0.58	+0.6
3,728,480	+		HGI48_RS16640	0.58	-0.2
3,728,481	-		HGI48_RS16640	0.58	+0.6
3,728,481	-		HGI48_RS16640	0.58	-0.3
3,728,481	-		HGI48_RS16640	0.58	-0.4
3,728,626	-		HGI48_RS16640	0.68	-1.9
3,728,655	+		HGI48_RS16640	0.70	+0.0
3,728,753	+		HGI48_RS16640	0.77	-1.0
3,728,754	-		HGI48_RS16640	0.77	+0.6
3,728,754	-		HGI48_RS16640	0.77	+0.0
3,728,754	-		HGI48_RS16640	0.77	+0.2
3,728,754	-		HGI48_RS16640	0.77	+0.3
3,728,754	-		HGI48_RS16640	0.77	+0.0
3,728,913	+		HGI48_RS16640	0.88	-1.4
3,728,913	+		HGI48_RS16640	0.88	-2.7
3,728,913	+		HGI48_RS16640	0.88	-0.3
3,728,913	+		HGI48_RS16640	0.88	-0.6
3,728,913	+		HGI48_RS16640	0.88	-1.4
3,728,968	+				-1.6
3,728,968	+				-1.3
3,728,969	-				+0.4
3,729,178	-				+0.4
3,729,178	-				-0.7
3,729,178	-				+1.1
3,729,357	+		HGI48_RS16645	0.18	-1.3
3,729,358	-		HGI48_RS16645	0.19	-1.0
3,729,421	+		HGI48_RS16645	0.24	+0.2
3,729,421	+		HGI48_RS16645	0.24	-0.3
3,729,421	+		HGI48_RS16645	0.24	-0.1
3,729,421	+		HGI48_RS16645	0.24	-0.6
3,729,421	+		HGI48_RS16645	0.24	-0.2
3,729,421	+		HGI48_RS16645	0.24	+0.2
3,729,422	-		HGI48_RS16645	0.25	+0.4
3,729,422	-				+2.9
3,729,422	-		HGI48_RS16645	0.25	+0.9
3,729,422	-		HGI48_RS16645	0.25	-0.3
3,729,422	-		HGI48_RS16645	0.25	-2.7
3,729,422	-		HGI48_RS16645	0.25	-2.2
3,729,422	-				+0.8
3,729,464	+		HGI48_RS16645	0.29	-2.9
3,729,500	+		HGI48_RS16645	0.32	-0.4
3,729,736	+		HGI48_RS16645	0.54	-0.4
3,729,736	+		HGI48_RS16645	0.54	+0.4
3,729,736	+				+1.2
3,729,736	+		HGI48_RS16645	0.54	-0.1
3,729,736	+		HGI48_RS16645	0.54	+0.3
3,729,736	+		HGI48_RS16645	0.54	-2.0
3,729,737	-		HGI48_RS16645	0.54	+0.1
3,729,737	-		HGI48_RS16645	0.54	+1.2
3,729,737	-		HGI48_RS16645	0.54	-0.6
3,729,737	-		HGI48_RS16645	0.54	-1.6
3,729,737	-				+1.4
3,729,737	-		HGI48_RS16645	0.54	-0.9
3,729,904	+		HGI48_RS16645	0.70	-0.5
3,729,970	+		HGI48_RS16645	0.76	-1.0
3,729,985	+		HGI48_RS16645	0.78	-0.3
3,729,985	+		HGI48_RS16645	0.78	+0.1
3,729,985	+		HGI48_RS16645	0.78	+0.3
3,729,985	+		HGI48_RS16645	0.78	-2.6
3,729,985	+		HGI48_RS16645	0.78	+0.7
3,729,986	-		HGI48_RS16645	0.78	-0.6
3,729,986	-		HGI48_RS16645	0.78	-0.0
3,729,986	-		HGI48_RS16645	0.78	-0.5
3,729,986	-		HGI48_RS16645	0.78	-0.0
3,729,986	-				-0.2
3,729,986	-		HGI48_RS16645	0.78	-0.5
3,730,062	+		HGI48_RS16645	0.85	+0.0
3,730,063	-		HGI48_RS16645	0.85	-2.4
3,730,143	-				-2.2
3,730,184	-				-2.2
3,730,233	+				-0.6
3,730,241	+				-1.2
3,730,246	-				+0.7
3,730,330	+				+1.1
3,730,330	+				-1.0
3,730,373	+				-0.2
3,730,373	+				-0.9
3,730,374	-				-1.2
3,730,382	-				+0.4
3,730,434	+				-1.6
3,730,459	+				-0.1
3,730,459	+				-0.6
3,730,499	+				+0.4
3,730,499	+				+1.7
3,730,499	+				+0.6
3,730,500	-				-0.4
3,730,500	-				-2.2
3,730,502	-				-0.5
3,730,502	-				-1.3
3,730,510	+				-0.6
3,730,511	-				-1.6
3,730,552	+				-0.8
3,730,553	-				+0.2
3,730,563	+				-1.3
3,730,564	-				+0.7
3,730,568	+				+1.4
3,730,568	+				-1.2
3,730,569	-				+0.7
3,730,569	-				+1.1
3,730,569	-				-1.6
3,730,661	+				+1.1
3,730,724	+		HGI48_RS16650	0.18	-0.3
3,730,724	+		HGI48_RS16650	0.18	+0.9
3,730,724	+		HGI48_RS16650	0.18	+0.0
3,730,724	+		HGI48_RS16650	0.18	+0.7
3,730,725	-		HGI48_RS16650	0.18	+1.8
3,730,725	-		HGI48_RS16650	0.18	+0.9
3,730,726	+		HGI48_RS16650	0.18	-2.0
3,730,726	+		HGI48_RS16650	0.18	+1.8
3,730,727	-		HGI48_RS16650	0.18	-1.9
3,730,727	-		HGI48_RS16650	0.18	+1.0
3,730,763	+		HGI48_RS16650	0.23	-0.6
3,730,763	+				-0.2
3,730,763	+		HGI48_RS16650	0.23	+1.0
3,730,764	-		HGI48_RS16650	0.23	+0.4
3,730,764	-		HGI48_RS16650	0.23	+0.3
3,730,784	+				+0.8
3,730,785	-		HGI48_RS16650	0.26	+0.8
3,730,785	-		HGI48_RS16650	0.26	+0.2
3,730,817	+		HGI48_RS16650	0.31	+1.7
3,730,818	-		HGI48_RS16650	0.31	+0.7
3,730,952	+		HGI48_RS16650	0.49	-1.2
3,730,970	+		HGI48_RS16650	0.52	-1.2
3,730,983	-		HGI48_RS16650	0.53	-0.4
3,731,021	+				+0.4
3,731,021	+		HGI48_RS16650	0.59	-1.2
3,731,039	+		HGI48_RS16650	0.61	-1.0
3,731,039	+		HGI48_RS16650	0.61	+1.9
3,731,039	+		HGI48_RS16650	0.61	-0.9
3,731,039	+		HGI48_RS16650	0.61	+0.6
3,731,039	+		HGI48_RS16650	0.61	+2.1
3,731,039	+				+1.2
3,731,040	-		HGI48_RS16650	0.61	+0.1
3,731,040	-		HGI48_RS16650	0.61	-1.6
3,731,040	-				+2.4
3,731,041	+		HGI48_RS16650	0.61	+0.1
3,731,042	-		HGI48_RS16650	0.62	-0.9
3,731,054	+		HGI48_RS16650	0.63	+1.2
3,731,055	-		HGI48_RS16650	0.63	-1.6
3,731,055	-		HGI48_RS16650	0.63	-0.6
3,731,055	-		HGI48_RS16650	0.63	+1.7
3,731,060	+		HGI48_RS16650	0.64	-1.2
3,731,060	+		HGI48_RS16650	0.64	+0.4
3,731,060	+		HGI48_RS16650	0.64	-0.3
3,731,061	-				+0.4
3,731,061	-		HGI48_RS16650	0.64	-1.1
3,731,061	-		HGI48_RS16650	0.64	-1.6
3,731,061	-		HGI48_RS16650	0.64	-0.7
3,731,162	+		HGI48_RS16650	0.78	-0.2
3,731,162	+		HGI48_RS16650	0.78	-0.2
3,731,162	+		HGI48_RS16650	0.78	-0.9
3,731,162	+		HGI48_RS16650	0.78	+0.5
3,731,162	+		HGI48_RS16650	0.78	-0.3
3,731,162	+		HGI48_RS16650	0.78	+0.7
3,731,162	+		HGI48_RS16650	0.78	+0.1
3,731,162	+		HGI48_RS16650	0.78	+0.4
3,731,163	-		HGI48_RS16650	0.78	-0.2
3,731,163	-		HGI48_RS16650	0.78	-0.3
3,731,163	-		HGI48_RS16650	0.78	+0.6
3,731,195	+		HGI48_RS16650	0.83	+0.1
3,731,202	-		HGI48_RS16650	0.84	+2.0
3,731,202	-				+2.4