Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16225

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,638,339	-		HGI48_RS16220	0.84	-0.6
3,638,635	-				+1.0
3,638,781	-				-1.2
3,638,782	+				+0.4
3,638,883	+				+1.3
3,638,883	+				-0.5
3,638,961	+				+0.9
3,638,972	+				-0.6
3,638,972	+				+0.1
3,638,973	-				-0.0
3,638,973	-				+0.0
3,639,036	-				+0.1
3,639,042	+				-0.4
3,639,042	+				-0.6
3,639,116	+				-0.6
3,639,116	+				-1.6
3,639,116	+				+0.4
3,639,116	+				-1.2
3,639,117	-				+0.9
3,639,140	+				+1.5
3,639,141	-				+0.2
3,639,180	+				-0.2
3,639,180	+				-1.2
3,639,180	+				-1.3
3,639,181	-				+2.3
3,639,181	-				+0.2
3,639,181	-				-1.6
3,639,203	-				+0.2
3,639,209	+				+1.0
3,639,242	-				-2.2
3,639,243	+				-2.8
3,639,243	+				+0.4
3,639,267	+				-0.0
3,639,268	-				-0.1
3,639,268	-				+0.8
3,639,301	+		HGI48_RS16225	0.10	-0.4
3,639,301	+		HGI48_RS16225	0.10	+0.0
3,639,301	+		HGI48_RS16225	0.10	-0.2
3,639,302	-		HGI48_RS16225	0.10	+0.4
3,639,302	-		HGI48_RS16225	0.10	+1.7
3,639,302	-				+2.0
3,639,302	-				+2.2
3,639,304	+		HGI48_RS16225	0.10	+0.4
3,639,305	-		HGI48_RS16225	0.10	-0.6
3,639,305	-				+2.0
3,639,329	+				+2.5
3,639,329	+		HGI48_RS16225	0.11	-0.2
3,639,389	+				-0.2
3,639,389	+		HGI48_RS16225	0.14	-2.4
3,639,389	+		HGI48_RS16225	0.14	-1.6
3,639,389	+		HGI48_RS16225	0.14	-0.1
3,639,389	+		HGI48_RS16225	0.14	+0.0
3,639,390	-		HGI48_RS16225	0.14	-0.3
3,639,390	-		HGI48_RS16225	0.14	+0.2
3,639,414	+		HGI48_RS16225	0.14	-1.2
3,639,414	+				-1.2
3,639,414	+		HGI48_RS16225	0.14	-0.8
3,639,414	+		HGI48_RS16225	0.14	-4.0
3,639,414	+		HGI48_RS16225	0.14	-0.1
3,639,415	-		HGI48_RS16225	0.15	-1.6
3,639,415	-		HGI48_RS16225	0.15	-0.2
3,639,494	+		HGI48_RS16225	0.18	-0.9
3,639,494	+		HGI48_RS16225	0.18	+0.0
3,639,494	+		HGI48_RS16225	0.18	-0.9
3,639,495	-		HGI48_RS16225	0.18	+0.2
3,639,495	-				+0.4
3,639,533	+		HGI48_RS16225	0.19	-0.2
3,639,534	-		HGI48_RS16225	0.19	-1.9
3,639,534	-		HGI48_RS16225	0.19	+1.3
3,639,534	-		HGI48_RS16225	0.19	-1.0
3,639,542	+		HGI48_RS16225	0.19	-0.1
3,639,542	+		HGI48_RS16225	0.19	+0.4
3,639,545	+		HGI48_RS16225	0.20	+1.2
3,639,545	+		HGI48_RS16225	0.20	+0.9
3,639,546	-		HGI48_RS16225	0.20	+1.7
3,639,546	-		HGI48_RS16225	0.20	+0.0
3,639,546	-		HGI48_RS16225	0.20	-1.6
3,639,657	+		HGI48_RS16225	0.24	-2.0
3,639,715	+		HGI48_RS16225	0.26	-0.6
3,639,715	+				-0.2
3,639,715	+		HGI48_RS16225	0.26	-0.3
3,639,715	+		HGI48_RS16225	0.26	+0.8
3,639,716	-		HGI48_RS16225	0.26	+0.9
3,639,716	-		HGI48_RS16225	0.26	-0.3
3,639,716	-		HGI48_RS16225	0.26	-1.6
3,639,716	-		HGI48_RS16225	0.26	+1.0
3,639,784	+		HGI48_RS16225	0.29	+0.4
3,640,189	+		HGI48_RS16225	0.45	-0.9
3,640,190	-		HGI48_RS16225	0.45	+0.2
3,640,190	-		HGI48_RS16225	0.45	+0.0
3,640,435	+		HGI48_RS16225	0.54	-0.4
3,640,477	-				+2.0
3,640,545	+				+0.4
3,640,545	+		HGI48_RS16225	0.58	-0.8
3,640,570	+		HGI48_RS16225	0.59	-2.9
3,640,579	+		HGI48_RS16225	0.60	-0.6
3,640,580	-		HGI48_RS16225	0.60	+2.2
3,640,580	-		HGI48_RS16225	0.60	-0.3
3,640,650	+		HGI48_RS16225	0.63	+0.7
3,640,650	+		HGI48_RS16225	0.63	-1.6
3,640,650	+		HGI48_RS16225	0.63	+0.1
3,640,650	+		HGI48_RS16225	0.63	-1.8
3,640,650	+		HGI48_RS16225	0.63	-0.4
3,640,650	+		HGI48_RS16225	0.63	+0.7
3,640,650	+				+2.3
3,640,651	-		HGI48_RS16225	0.63	+0.7
3,640,651	-				-1.2
3,640,768	+		HGI48_RS16225	0.67	+0.6
3,640,768	+		HGI48_RS16225	0.67	-0.1
3,640,768	+		HGI48_RS16225	0.67	-0.1
3,640,768	+				+0.8
3,640,769	-		HGI48_RS16225	0.67	+1.7
3,640,769	-		HGI48_RS16225	0.67	+0.4
3,640,769	-		HGI48_RS16225	0.67	-0.1
3,640,769	-		HGI48_RS16225	0.67	+0.2
3,640,769	-		HGI48_RS16225	0.67	+1.1
3,640,813	+		HGI48_RS16225	0.69	-1.6
3,640,813	+		HGI48_RS16225	0.69	-2.2
3,641,020	+		HGI48_RS16225	0.77	-0.2
3,641,044	+		HGI48_RS16225	0.78	-1.8
3,641,047	+		HGI48_RS16225	0.78	+0.7
3,641,047	+		HGI48_RS16225	0.78	+0.7
3,641,097	+		HGI48_RS16225	0.80	+0.8
3,641,271	-		HGI48_RS16225	0.87	+0.4
3,641,285	+		HGI48_RS16225	0.87	-2.4
3,641,285	+		HGI48_RS16225	0.87	-2.2
3,641,286	-		HGI48_RS16225	0.87	-0.2
3,641,338	+		HGI48_RS16225	0.89	-1.2
3,641,339	-		HGI48_RS16225	0.89	-0.2
3,641,339	-		HGI48_RS16225	0.89	-1.0
3,641,339	-		HGI48_RS16225	0.89	+0.2
3,641,341	+		HGI48_RS16225	0.89	-1.6
3,641,596	+				-0.3
3,641,596	+				-0.4
3,641,614	+				-1.6
3,641,615	-				+0.4
3,641,624	+				-0.5
3,641,624	+				+1.4
3,641,625	-				+0.1
3,641,626	+				+1.0
3,641,626	+				-0.7
3,641,626	+				+1.0
3,641,626	+				+0.8
3,641,626	+				-0.5
3,641,626	+				-2.6
3,641,626	+				+1.0
3,641,626	+				+0.8
3,641,626	+				-0.8
3,641,626	+				+0.2
3,641,626	+				-1.6
3,641,626	+				+0.4
3,641,627	-				-0.6
3,641,627	-				-0.1
3,641,627	-				-0.1
3,641,627	-				+0.0
3,641,627	-				-0.6
3,641,627	-				+0.8
3,641,627	-				+0.0
3,641,627	-				+0.4
3,641,627	-				+0.2
3,641,630	+				-0.5
3,641,631	-				+0.2
3,641,631	-				-1.2
3,641,631	-				+0.2
3,641,631	-				+0.1
3,641,657	-				-0.2
3,641,657	-				+0.9
3,641,698	+				+0.5
3,641,701	+				-0.9
3,641,701	+				+1.2
3,641,701	+				-0.1
3,641,704	+				-0.8
3,641,704	+				-0.6
3,641,705	-				-0.6
3,641,753	+				+0.1
3,641,776	+				-0.2
3,641,777	-				-2.4
3,641,777	-				-0.6
3,641,777	-				+0.6
3,641,833	+		HGI48_RS16230	0.11	-0.1
3,641,833	+		HGI48_RS16230	0.11	+0.2
3,641,834	-		HGI48_RS16230	0.12	+1.0
3,641,834	-		HGI48_RS16230	0.12	-0.3
3,641,882	+		HGI48_RS16230	0.18	-1.6
3,641,883	-		HGI48_RS16230	0.18	-0.3
3,641,883	-		HGI48_RS16230	0.18	-0.4
3,641,898	+		HGI48_RS16230	0.20	-0.2
3,641,899	-		HGI48_RS16230	0.21	+0.7
3,641,899	-		HGI48_RS16230	0.21	-3.4
3,641,902	+		HGI48_RS16230	0.21	-0.6
3,641,902	+		HGI48_RS16230	0.21	+0.0
3,641,932	+		HGI48_RS16230	0.25	-1.2
3,641,932	+		HGI48_RS16230	0.25	-1.6
3,641,932	+		HGI48_RS16230	0.25	-1.3
3,641,933	-		HGI48_RS16230	0.25	+0.7
3,641,965	+		HGI48_RS16230	0.30	+0.2
3,641,965	+		HGI48_RS16230	0.30	-1.7
3,641,965	+		HGI48_RS16230	0.30	-0.8
3,641,965	+		HGI48_RS16230	0.30	-0.6
3,641,965	+		HGI48_RS16230	0.30	-0.8
3,641,965	+		HGI48_RS16230	0.30	-0.8
3,641,966	-		HGI48_RS16230	0.30	-0.0
3,641,966	-		HGI48_RS16230	0.30	+0.2
3,641,966	-		HGI48_RS16230	0.30	-1.4
3,641,966	-		HGI48_RS16230	0.30	-0.4
3,642,065	+		HGI48_RS16230	0.43	-1.6
3,642,065	+				+2.2
3,642,065	+		HGI48_RS16230	0.43	+2.0
3,642,065	+		HGI48_RS16230	0.43	-1.6
3,642,066	-		HGI48_RS16230	0.44	-0.8
3,642,066	-		HGI48_RS16230	0.44	-1.0
3,642,066	-		HGI48_RS16230	0.44	-2.0
3,642,066	-		HGI48_RS16230	0.44	-0.3
3,642,081	-		HGI48_RS16230	0.46	+0.4
3,642,196	+		HGI48_RS16230	0.61	+0.7
3,642,205	+		HGI48_RS16230	0.63	-0.9
3,642,205	+		HGI48_RS16230	0.63	+0.1
3,642,205	+		HGI48_RS16230	0.63	-1.6
3,642,205	+		HGI48_RS16230	0.63	-1.2
3,642,205	+		HGI48_RS16230	0.63	-0.1
3,642,205	+		HGI48_RS16230	0.63	-1.8
3,642,205	+		HGI48_RS16230	0.63	-1.9
3,642,205	+				+0.8
3,642,206	-		HGI48_RS16230	0.63	+1.2
3,642,206	-		HGI48_RS16230	0.63	-1.2
3,642,206	-		HGI48_RS16230	0.63	-2.6
3,642,206	-		HGI48_RS16230	0.63	-0.6
3,642,206	-		HGI48_RS16230	0.63	-0.5
3,642,206	-		HGI48_RS16230	0.63	-2.4
3,642,207	+		HGI48_RS16230	0.63	-0.9
3,642,207	+		HGI48_RS16230	0.63	-1.9
3,642,208	-		HGI48_RS16230	0.63	-1.8
3,642,208	-		HGI48_RS16230	0.63	-1.8
3,642,208	-		HGI48_RS16230	0.63	-3.0
3,642,390	+				-1.2
3,642,390	+		HGI48_RS16230	0.88	+0.8
3,642,467	+				+0.1
3,642,515	+				-0.6
3,642,516	-				-1.5
3,642,560	+				-1.9
3,642,606	-		HGI48_RS16235	0.11	+1.1
3,642,606	-		HGI48_RS16235	0.11	+0.7
3,642,613	+		HGI48_RS16235	0.12	+1.7