Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15855

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
3,564,364	-				+0.7
3,564,364	-				-0.2
3,564,364	-				-1.1
3,564,364	-				+1.4
3,564,428	+				-0.6
3,564,428	+				-2.9
3,564,428	+				-1.2
3,564,431	+				-0.8
3,564,511	+		HGI48_RS15850	0.19	-1.6
3,564,511	+		HGI48_RS15850	0.19	-1.8
3,564,511	+		HGI48_RS15850	0.19	-1.6
3,564,512	-		HGI48_RS15850	0.19	-0.2
3,564,539	+		HGI48_RS15850	0.24	-2.8
3,564,539	+		HGI48_RS15850	0.24	-0.8
3,564,540	-		HGI48_RS15850	0.24	-0.7
3,564,575	+		HGI48_RS15850	0.30	-0.9
3,564,575	+		HGI48_RS15850	0.30	-0.9
3,564,576	-		HGI48_RS15850	0.30	-2.5
3,564,579	-		HGI48_RS15850	0.31	-0.4
3,564,615	+		HGI48_RS15850	0.37	-2.3
3,564,615	+		HGI48_RS15850	0.37	-0.2
3,564,615	+				-1.2
3,564,616	-		HGI48_RS15850	0.37	-1.9
3,564,616	-		HGI48_RS15850	0.37	-0.6
3,564,616	-		HGI48_RS15850	0.37	-1.9
3,564,616	-		HGI48_RS15850	0.37	-1.6
3,564,616	-		HGI48_RS15850	0.37	-2.2
3,564,616	-		HGI48_RS15850	0.37	-1.6
3,564,616	-				-1.2
3,564,616	-				-0.2
3,564,684	+		HGI48_RS15850	0.49	-0.6
3,564,684	+		HGI48_RS15850	0.49	-0.4
3,564,684	+		HGI48_RS15850	0.49	-2.2
3,564,684	+		HGI48_RS15850	0.49	-1.5
3,564,684	+				+1.0
3,564,685	-		HGI48_RS15850	0.49	-1.6
3,564,685	-		HGI48_RS15850	0.49	-3.0
3,564,685	-		HGI48_RS15850	0.49	-1.9
3,564,685	-		HGI48_RS15850	0.49	-1.4
3,564,685	-		HGI48_RS15850	0.49	-0.2
3,564,725	-		HGI48_RS15850	0.56	-2.6
3,564,766	+		HGI48_RS15850	0.63	-1.1
3,564,766	+		HGI48_RS15850	0.63	+0.4
3,564,767	-		HGI48_RS15850	0.63	-0.6
3,564,880	-		HGI48_RS15850	0.83	-1.6
3,564,880	-		HGI48_RS15850	0.83	+0.1
3,564,912	-				-1.2
3,564,912	-		HGI48_RS15850	0.89	+0.2
3,564,964	-				+0.4
3,564,984	+				-1.9
3,564,984	+				+1.4
3,564,984	+				+0.0
3,564,985	-				-0.6
3,564,985	-				+2.1
3,565,015	+				-0.3
3,565,024	+				-1.9
3,565,024	+				-0.2
3,565,024	+				-1.7
3,565,025	-				+0.7
3,565,036	+				-0.4
3,565,036	+				-2.6
3,565,036	+				+0.3
3,565,036	+				-0.8
3,565,036	+				-0.3
3,565,037	-				-0.3
3,565,037	-				-2.2
3,565,037	-				-0.8
3,565,038	+				-0.9
3,565,038	+				-2.8
3,565,038	+				-0.6
3,565,038	+				+1.2
3,565,038	+				+0.4
3,565,038	+				-1.2
3,565,039	-				-1.9
3,565,075	+				-0.7
3,565,075	+				-1.6
3,565,082	+				-2.4
3,565,082	+				-0.1
3,565,160	+				-0.0
3,565,161	-				-0.2
3,565,161	-				+0.9
3,565,178	+				+1.7
3,565,179	-				-1.4
3,565,196	-				-0.2
3,565,228	-				+1.2
3,565,282	+				-1.9
3,565,283	-				-1.0
3,565,335	+				-0.7
3,565,477	+				+0.2
3,565,478	-				+0.4
3,565,478	-				-1.9
3,565,478	-				+0.8
3,565,779	-		HGI48_RS15855	0.28	+0.1
3,565,795	-		HGI48_RS15855	0.29	-0.8
3,565,883	-		HGI48_RS15855	0.34	+0.4
3,565,883	-				+0.4
3,565,972	+				-1.2
3,565,973	-		HGI48_RS15855	0.40	+0.0
3,566,013	+				-0.2
3,566,014	-		HGI48_RS15855	0.42	+1.0
3,566,080	+		HGI48_RS15855	0.46	+1.6
3,566,081	-		HGI48_RS15855	0.47	-0.6
3,566,098	-		HGI48_RS15855	0.48	+0.7
3,566,166	+		HGI48_RS15855	0.52	-0.3
3,566,263	+		HGI48_RS15855	0.58	-2.6
3,566,263	+		HGI48_RS15855	0.58	-1.0
3,566,263	+		HGI48_RS15855	0.58	+0.7
3,566,263	+		HGI48_RS15855	0.58	+0.2
3,566,263	+		HGI48_RS15855	0.58	-0.7
3,566,263	+		HGI48_RS15855	0.58	+0.6
3,566,264	-		HGI48_RS15855	0.58	+0.0
3,566,264	-		HGI48_RS15855	0.58	-0.0
3,566,264	-		HGI48_RS15855	0.58	-1.9
3,566,264	-		HGI48_RS15855	0.58	-0.2
3,566,264	-		HGI48_RS15855	0.58	+0.1
3,566,316	+		HGI48_RS15855	0.61	+1.4
3,566,389	+		HGI48_RS15855	0.66	-0.9
3,566,389	+		HGI48_RS15855	0.66	+0.1
3,566,389	+		HGI48_RS15855	0.66	-0.9
3,566,390	-		HGI48_RS15855	0.66	-0.6
3,566,390	-		HGI48_RS15855	0.66	+1.5
3,566,390	-		HGI48_RS15855	0.66	+0.8
3,566,390	-				+0.4
3,566,447	-		HGI48_RS15855	0.69	+0.6
3,566,467	+		HGI48_RS15855	0.71	-1.7
3,566,468	-		HGI48_RS15855	0.71	+1.6
3,566,468	-		HGI48_RS15855	0.71	-2.2
3,566,468	-		HGI48_RS15855	0.71	-0.6
3,566,468	-		HGI48_RS15855	0.71	+0.6
3,566,468	-		HGI48_RS15855	0.71	+0.9
3,566,527	+				+0.4
3,566,527	+		HGI48_RS15855	0.74	+0.1
3,566,528	-		HGI48_RS15855	0.74	-0.8
3,566,528	-		HGI48_RS15855	0.74	-1.6
3,566,663	+				+0.4
3,566,663	+		HGI48_RS15855	0.83	-0.6
3,566,663	+		HGI48_RS15855	0.83	-0.2
3,566,663	+		HGI48_RS15855	0.83	+0.6
3,566,664	-		HGI48_RS15855	0.83	-1.2
3,566,664	-		HGI48_RS15855	0.83	-0.6
3,566,664	-		HGI48_RS15855	0.83	+0.6
3,566,664	-		HGI48_RS15855	0.83	+0.4
3,566,664	-		HGI48_RS15855	0.83	-0.4
3,566,664	-		HGI48_RS15855	0.83	-0.8
3,566,684	-		HGI48_RS15855	0.84	+0.1
3,566,733	+				+2.0
3,566,733	+				+3.1
3,566,734	-		HGI48_RS15855	0.87	+0.6
3,566,734	-		HGI48_RS15855	0.87	-1.4
3,566,764	+		HGI48_RS15855	0.89	-1.2
3,566,764	+				+0.4
3,566,765	-				-1.2
3,566,765	-		HGI48_RS15855	0.89	+0.4
3,566,765	-		HGI48_RS15855	0.89	+0.2
3,566,765	-		HGI48_RS15855	0.89	+0.3
3,566,767	+		HGI48_RS15855	0.89	-3.4
3,566,767	+		HGI48_RS15855	0.89	-0.5
3,566,768	-		HGI48_RS15855	0.89	-0.6
3,566,804	+				-0.3
3,566,805	-				-0.5
3,566,805	-				-0.6
3,566,878	+				+0.7
3,567,023	+				-2.8
3,567,023	+				-2.2
3,567,023	+				-0.6
3,567,024	-				+0.9
3,567,027	+				-0.9
3,567,027	+				+0.0
3,567,028	-				+1.7
3,567,028	-				-0.2
3,567,032	-				+0.4
3,567,039	-				-2.2
3,567,039	-				+2.2
3,567,042	+				-0.6
3,567,043	-				+0.2
3,567,043	-				+1.3
3,567,046	+				+0.2
3,567,046	+				+0.0
3,567,046	+				-0.3
3,567,047	-				-2.4
3,567,053	+				+0.4
3,567,053	+				+0.1
3,567,054	-				-0.1
3,567,054	-				+0.7
3,567,057	+				+0.0
3,567,057	+				-0.3
3,567,057	+				-0.3
3,567,058	-				-2.4
3,567,061	+				-2.4
3,567,101	+				-1.0
3,567,289	+		HGI48_RS15860	0.32	+0.2
3,567,290	-		HGI48_RS15860	0.32	+1.2
3,567,290	-		HGI48_RS15860	0.32	+0.0
3,567,363	+		HGI48_RS15860	0.42	-2.4
3,567,364	-		HGI48_RS15860	0.42	-1.4
3,567,366	-		HGI48_RS15860	0.42	-2.2
3,567,427	-		HGI48_RS15860	0.50	-0.6
3,567,443	+		HGI48_RS15860	0.53	-0.4
3,567,467	+		HGI48_RS15860	0.56	+0.2
3,567,467	+		HGI48_RS15860	0.56	-0.6
3,567,467	+		HGI48_RS15860	0.56	+0.0
3,567,467	+		HGI48_RS15860	0.56	-1.6
3,567,477	+		HGI48_RS15860	0.57	-0.5
3,567,478	-		HGI48_RS15860	0.57	-0.2
3,567,499	-		HGI48_RS15860	0.60	-2.4
3,567,750	+				-2.4
3,567,750	+				+0.1
3,567,751	-				+0.7
3,567,751	-				-0.1
3,567,778	-				+0.9
3,567,778	-				-0.9
3,567,778	-				-2.6
3,567,778	-				+0.2
3,567,809	-				-0.5
3,567,809	-				-1.6
3,567,809	-				+0.7
3,567,809	-				+2.7
3,567,809	-				+1.4
3,567,830	+				-0.5
3,567,830	+				-1.6
3,567,830	+				-1.1
3,567,830	+				+0.5
3,567,831	-				+0.4
3,567,831	-				+0.8
3,567,900	+				-0.1
3,567,900	+				+0.2
3,567,901	-				-1.2
3,567,901	-				-0.1
3,567,901	-				+0.4
3,567,901	-				-1.9
3,567,903	-				+0.4
3,567,903	-				-1.9
3,567,903	-				-1.0
3,567,903	-				-1.9
3,567,924	+				-0.2
3,567,924	+				-1.3
3,567,924	+				-0.7
3,567,925	-				-0.5
3,567,925	-				+0.8
3,567,925	-				-0.9
3,567,925	-				-1.3
3,567,925	-				-0.4
3,567,925	-				+1.9
3,567,925	-				+2.2