Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13340

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,921,204	+		HGI48_RS13335	0.45	+0.6
2,921,204	+				+0.3
2,921,205	-		HGI48_RS13335	0.45	+0.6
2,921,205	-		HGI48_RS13335	0.45	+0.7
2,921,226	+		HGI48_RS13335	0.47	+1.1
2,921,227	-		HGI48_RS13335	0.47	-0.4
2,921,267	+		HGI48_RS13335	0.49	-1.5
2,921,267	+		HGI48_RS13335	0.49	-1.0
2,921,268	-		HGI48_RS13335	0.49	+0.5
2,921,268	-		HGI48_RS13335	0.49	+0.5
2,921,268	-		HGI48_RS13335	0.49	-1.6
2,921,268	-		HGI48_RS13335	0.49	+0.4
2,921,268	-		HGI48_RS13335	0.49	+0.8
2,921,268	-		HGI48_RS13335	0.49	+0.9
2,921,489	+		HGI48_RS13335	0.63	+0.8
2,921,496	+		HGI48_RS13335	0.63	+1.0
2,921,496	+		HGI48_RS13335	0.63	+0.0
2,921,496	+		HGI48_RS13335	0.63	+0.9
2,921,496	+		HGI48_RS13335	0.63	+0.7
2,921,496	+		HGI48_RS13335	0.63	-0.9
2,921,496	+		HGI48_RS13335	0.63	+0.6
2,921,496	+		HGI48_RS13335	0.63	+0.3
2,921,497	-		HGI48_RS13335	0.64	-0.4
2,921,497	-		HGI48_RS13335	0.64	+2.2
2,921,497	-		HGI48_RS13335	0.64	+0.9
2,921,497	-		HGI48_RS13335	0.64	+0.0
2,921,497	-		HGI48_RS13335	0.64	+0.7
2,921,519	+		HGI48_RS13335	0.65	-0.2
2,921,519	+				+1.1
2,921,520	-		HGI48_RS13335	0.65	+1.7
2,921,610	-				+0.3
2,921,742	-		HGI48_RS13335	0.79	+0.0
2,922,039	+				-1.0
2,922,039	+				+0.6
2,922,039	+				+1.0
2,922,039	+				+0.5
2,922,040	-				-0.9
2,922,053	+				+2.2
2,922,053	+				+0.6
2,922,053	+				-0.7
2,922,053	+				+1.6
2,922,054	-				-0.3
2,922,158	+				+1.3
2,922,158	+				-1.7
2,922,158	+				+0.1
2,922,158	+				+0.3
2,922,171	+				+0.2
2,922,172	-				-0.7
2,922,172	-				+1.5
2,922,172	-				+2.3
2,922,432	+		HGI48_RS13340	0.36	+0.3
2,922,432	+		HGI48_RS13340	0.36	-0.7
2,922,432	+		HGI48_RS13340	0.36	-0.9
2,922,433	-		HGI48_RS13340	0.36	-0.0
2,922,433	-		HGI48_RS13340	0.36	+0.6
2,922,433	-		HGI48_RS13340	0.36	+0.6
2,922,434	+		HGI48_RS13340	0.36	-0.3
2,922,434	+		HGI48_RS13340	0.36	+0.1
2,922,434	+		HGI48_RS13340	0.36	+0.5
2,922,434	+		HGI48_RS13340	0.36	-2.8
2,922,434	+		HGI48_RS13340	0.36	+0.3
2,922,434	+		HGI48_RS13340	0.36	-0.4
2,922,435	-		HGI48_RS13340	0.36	-0.9
2,922,482	+		HGI48_RS13340	0.42	+0.5
2,922,524	+		HGI48_RS13340	0.47	-0.4
2,922,524	+		HGI48_RS13340	0.47	-1.4
2,922,524	+		HGI48_RS13340	0.47	+0.2
2,922,524	+		HGI48_RS13340	0.47	-0.4
2,922,524	+		HGI48_RS13340	0.47	-0.0
2,922,524	+		HGI48_RS13340	0.47	-1.7
2,922,525	-				+1.6
2,922,525	-		HGI48_RS13340	0.47	-0.3
2,922,525	-		HGI48_RS13340	0.47	+0.3
2,922,619	-		HGI48_RS13340	0.59	-0.9
2,922,619	-		HGI48_RS13340	0.59	+0.3
2,922,619	-		HGI48_RS13340	0.59	+0.9
2,922,619	-		HGI48_RS13340	0.59	+1.2
2,922,619	-		HGI48_RS13340	0.59	-2.0
2,922,621	+		HGI48_RS13340	0.60	-0.2
2,922,621	+		HGI48_RS13340	0.60	-2.0
2,922,621	+		HGI48_RS13340	0.60	-0.1
2,922,621	+		HGI48_RS13340	0.60	-0.7
2,922,622	-		HGI48_RS13340	0.60	-0.5
2,922,622	-		HGI48_RS13340	0.60	-0.1
2,922,622	-		HGI48_RS13340	0.60	-0.6
2,922,622	-				+0.9
2,922,636	+		HGI48_RS13340	0.61	+1.2
2,922,721	-		HGI48_RS13340	0.72	-0.7
2,922,727	+		HGI48_RS13340	0.73	-1.5
2,922,728	-				+0.7
2,922,728	-		HGI48_RS13340	0.73	-3.4
2,922,740	+				+0.3
2,922,740	+				-0.7
2,922,741	-		HGI48_RS13340	0.75	+0.3
2,922,741	-		HGI48_RS13340	0.75	-1.4
2,922,741	-		HGI48_RS13340	0.75	-2.5
2,922,741	-		HGI48_RS13340	0.75	+0.5
2,922,741	-				+2.1
2,922,940	-				+0.5
2,922,950	+				-0.2
2,922,950	+				-2.0
2,922,950	+				-0.0
2,922,950	+				+2.2
2,922,950	+				+0.2
2,922,950	+				-0.8
2,922,951	-				-0.7
2,922,951	-				-0.7
2,922,951	-				+1.0
2,923,024	+				-1.5
2,923,024	+				-2.3
2,923,025	-				-0.0
2,923,025	-				-1.1
2,923,213	+				+1.6
2,923,217	+				-0.7
2,923,218	-				+0.2
2,923,218	-				-2.3
2,923,218	-				-1.4
2,923,218	-				+0.7
2,923,258	+				+1.0
2,923,258	+				-2.1
2,923,258	+				+0.7
2,923,289	+				-0.7
2,923,289	+				-0.0
2,923,302	-				+0.8
2,923,363	+				-2.5
2,923,363	+				-0.2
2,923,364	-				+0.8
2,923,377	+				-2.0
2,923,378	-				-0.3
2,923,379	+				-0.2
2,923,380	-				+2.2
2,923,402	-				+0.6
2,923,402	-				+0.7
2,923,418	-				-0.0
2,923,422	+				-0.4
2,923,422	+				+0.3
2,923,423	-				-0.3
2,923,423	-				+0.5
2,923,429	-				-0.7
2,923,473	+				+1.7
2,923,476	+				-0.4
2,923,477	-				-0.1
2,923,477	-				-0.5
2,923,477	-				+1.3
2,923,477	-				-0.0
2,923,477	-				-2.8
2,923,498	-				-1.0
2,923,498	-				+0.6
2,923,531	+		HGI48_RS13345	0.12	-1.3
2,923,531	+		HGI48_RS13345	0.12	-2.0
2,923,531	+		HGI48_RS13345	0.12	-0.4
2,923,531	+		HGI48_RS13345	0.12	-0.6
2,923,531	+		HGI48_RS13345	0.12	-0.7
2,923,532	-		HGI48_RS13345	0.12	+0.3
2,923,532	-		HGI48_RS13345	0.12	+0.5
2,923,532	-		HGI48_RS13345	0.12	-1.8
2,923,532	-		HGI48_RS13345	0.12	+1.4
2,923,532	-		HGI48_RS13345	0.12	-0.4
2,923,532	-		HGI48_RS13345	0.12	+0.1
2,923,532	-		HGI48_RS13345	0.12	-1.5
2,923,532	-		HGI48_RS13345	0.12	+1.0
2,923,554	+		HGI48_RS13345	0.16	-2.8
2,923,554	+		HGI48_RS13345	0.16	+1.6
2,923,554	+		HGI48_RS13345	0.16	+0.6
2,923,565	-		HGI48_RS13345	0.18	+1.0
2,923,656	+		HGI48_RS13345	0.36	-1.0
2,923,657	-		HGI48_RS13345	0.36	-1.7
2,923,657	-		HGI48_RS13345	0.36	+0.3
2,923,657	-		HGI48_RS13345	0.36	-0.7
2,923,657	-		HGI48_RS13345	0.36	-2.0
2,923,657	-		HGI48_RS13345	0.36	-1.5
2,923,657	-		HGI48_RS13345	0.36	+0.6
2,923,702	-				+2.6
2,923,709	-		HGI48_RS13345	0.46	-0.2
2,923,709	-		HGI48_RS13345	0.46	+1.5
2,923,772	+		HGI48_RS13345	0.58	+0.2
2,923,773	-		HGI48_RS13345	0.59	-0.1
2,923,773	-				-0.7
2,923,807	+		HGI48_RS13345	0.65	-0.3
2,923,808	-		HGI48_RS13345	0.65	-1.7
2,923,808	-		HGI48_RS13345	0.65	-1.0
2,923,849	+				+0.7
2,923,849	+		HGI48_RS13345	0.73	+1.2
2,923,850	-		HGI48_RS13345	0.74	-0.3
2,923,871	+		HGI48_RS13345	0.78	-1.0
2,923,872	-		HGI48_RS13345	0.78	+0.6
2,923,906	+		HGI48_RS13345	0.85	+0.8