Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS11115

Experiment: PDB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PDB
2,414,221	-				+0.6
2,414,299	-				+1.3
2,414,303	+				-1.5
2,414,303	+				+3.1
2,414,304	-				-1.0
2,414,450	+				-1.0
2,414,451	-				+0.3
2,414,543	+				+1.7
2,414,543	+				+1.2
2,414,543	+				-2.5
2,414,544	-				-0.8
2,414,544	-				+0.4
2,414,544	-				-0.1
2,414,544	-				+2.1
2,414,544	-				-2.5
2,414,545	+				+0.8
2,414,546	-				+0.6
2,414,569	+				-0.6
2,414,569	+				+0.8
2,414,569	+				-0.2
2,414,570	-				-1.3
2,414,570	-				+1.2
2,414,570	-				-2.1
2,414,570	-				+0.5
2,414,654	-		HGI48_RS11110	0.15	+0.3
2,414,731	+				+1.3
2,414,732	-		HGI48_RS11110	0.31	+0.3
2,414,800	+		HGI48_RS11110	0.46	-0.5
2,414,801	-		HGI48_RS11110	0.46	-0.1
2,414,874	+				-0.7
2,414,924	+		HGI48_RS11110	0.72	+2.0
2,414,924	+		HGI48_RS11110	0.72	+0.6
2,414,925	-		HGI48_RS11110	0.72	+1.4
2,415,225	-				-0.1
2,415,225	-				-0.1
2,415,264	-				-0.0
2,415,390	-				-0.2
2,415,528	-				-1.1
2,415,599	+		HGI48_RS11115	0.10	-0.6
2,415,631	+				-1.3
2,415,632	-		HGI48_RS11115	0.11	+1.4
2,415,643	+		HGI48_RS11115	0.11	-0.1
2,415,643	+		HGI48_RS11115	0.11	+0.5
2,415,644	-				-1.3
2,415,727	+		HGI48_RS11115	0.13	+0.3
2,415,727	+		HGI48_RS11115	0.13	-0.6
2,415,728	-		HGI48_RS11115	0.13	+0.3
2,415,810	+		HGI48_RS11115	0.15	+0.6
2,415,810	+				+2.9
2,415,920	+		HGI48_RS11115	0.17	-1.8
2,415,920	+		HGI48_RS11115	0.17	+0.3
2,415,921	-		HGI48_RS11115	0.17	-1.3
2,415,921	-		HGI48_RS11115	0.17	+0.1
2,416,064	+		HGI48_RS11115	0.20	+0.9
2,416,287	-		HGI48_RS11115	0.25	+0.9
2,416,426	-		HGI48_RS11115	0.27	+1.0
2,416,624	+		HGI48_RS11115	0.31	-2.1
2,416,624	+		HGI48_RS11115	0.31	-0.1
2,416,624	+				+0.7
2,416,625	-				+1.6
2,416,625	-		HGI48_RS11115	0.31	+0.4
2,416,625	-		HGI48_RS11115	0.31	-1.3
2,416,625	-		HGI48_RS11115	0.31	+0.8
2,416,625	-				+2.6
2,416,628	+				+4.2
2,416,708	+		HGI48_RS11115	0.33	+0.3
2,416,708	+		HGI48_RS11115	0.33	+0.3
2,416,709	-		HGI48_RS11115	0.33	+2.0
2,416,709	-		HGI48_RS11115	0.33	+0.2
2,416,709	-		HGI48_RS11115	0.33	-3.3
2,416,732	+		HGI48_RS11115	0.34	-2.1
2,416,732	+		HGI48_RS11115	0.34	-0.4
2,416,732	+		HGI48_RS11115	0.34	+1.3
2,416,732	+		HGI48_RS11115	0.34	-0.7
2,416,732	+				+2.3
2,416,733	-		HGI48_RS11115	0.34	+1.3
2,416,733	-		HGI48_RS11115	0.34	+0.1
2,416,733	-		HGI48_RS11115	0.34	+0.9
2,416,733	-		HGI48_RS11115	0.34	+1.0
2,416,736	+		HGI48_RS11115	0.34	+0.6
2,416,737	-		HGI48_RS11115	0.34	+0.0
2,416,812	-		HGI48_RS11115	0.35	-0.5
2,416,857	-		HGI48_RS11115	0.36	-1.7
2,416,901	-		HGI48_RS11115	0.37	-0.5
2,416,970	-		HGI48_RS11115	0.39	+1.5
2,417,091	+		HGI48_RS11115	0.41	+1.7
2,417,091	+				+0.9
2,417,092	-				+1.9
2,417,092	-		HGI48_RS11115	0.41	-2.2
2,417,300	+		HGI48_RS11115	0.45	+0.1
2,417,301	-		HGI48_RS11115	0.45	-0.7
2,417,616	+		HGI48_RS11115	0.52	+0.9
2,417,616	+		HGI48_RS11115	0.52	-0.1
2,417,616	+		HGI48_RS11115	0.52	-1.3
2,417,616	+		HGI48_RS11115	0.52	-2.7
2,417,616	+		HGI48_RS11115	0.52	-0.5
2,417,617	-		HGI48_RS11115	0.52	+0.9
2,417,617	-		HGI48_RS11115	0.52	+0.3
2,417,617	-		HGI48_RS11115	0.52	-2.4
2,417,617	-				-0.3
2,417,617	-		HGI48_RS11115	0.52	-0.1
2,417,617	-		HGI48_RS11115	0.52	-0.5
2,417,618	+		HGI48_RS11115	0.52	+0.9
2,417,619	-		HGI48_RS11115	0.52	+0.8
2,417,678	-		HGI48_RS11115	0.53	-2.1
2,417,678	-		HGI48_RS11115	0.53	-0.9
2,417,678	-				+0.3
2,417,678	-		HGI48_RS11115	0.53	-1.7
2,417,678	-		HGI48_RS11115	0.53	+0.5
2,417,678	-				+1.5
2,417,690	-		HGI48_RS11115	0.53	+0.4
2,417,818	+		HGI48_RS11115	0.56	+1.5
2,417,818	+		HGI48_RS11115	0.56	-1.3
2,417,818	+		HGI48_RS11115	0.56	-0.7
2,417,818	+		HGI48_RS11115	0.56	+1.5
2,417,818	+		HGI48_RS11115	0.56	+0.1
2,417,818	+		HGI48_RS11115	0.56	+1.3
2,417,818	+		HGI48_RS11115	0.56	+0.1
2,417,818	+		HGI48_RS11115	0.56	+0.0
2,417,819	-		HGI48_RS11115	0.56	-2.1
2,417,819	-		HGI48_RS11115	0.56	-0.5
2,417,819	-		HGI48_RS11115	0.56	-0.1
2,417,927	+		HGI48_RS11115	0.58	+0.1
2,418,344	+		HGI48_RS11115	0.67	-0.7
2,418,344	+		HGI48_RS11115	0.67	+1.7
2,418,345	-		HGI48_RS11115	0.67	-2.1
2,418,415	+		HGI48_RS11115	0.68	-0.2
2,418,415	+		HGI48_RS11115	0.68	+0.3
2,418,415	+		HGI48_RS11115	0.68	+0.1
2,418,415	+		HGI48_RS11115	0.68	-1.6
2,418,415	+		HGI48_RS11115	0.68	+0.8
2,418,416	-		HGI48_RS11115	0.68	-1.7
2,418,416	-		HGI48_RS11115	0.68	-1.7
2,418,416	-				-0.3
2,418,416	-		HGI48_RS11115	0.68	-0.5
2,418,416	-		HGI48_RS11115	0.68	-0.2
2,418,416	-		HGI48_RS11115	0.68	-0.1
2,418,416	-		HGI48_RS11115	0.68	+1.3
2,418,416	-		HGI48_RS11115	0.68	-0.2
2,418,579	+		HGI48_RS11115	0.71	+0.3
2,418,719	+		HGI48_RS11115	0.74	-1.1
2,418,720	-		HGI48_RS11115	0.74	+1.4
2,419,128	-		HGI48_RS11115	0.83	+0.2
2,419,156	+		HGI48_RS11115	0.83	+0.3
2,419,156	+		HGI48_RS11115	0.83	+0.3
2,419,157	-		HGI48_RS11115	0.83	-2.1
2,419,157	-				+1.7
2,419,157	-		HGI48_RS11115	0.83	-0.1
2,419,241	-		HGI48_RS11115	0.85	-1.0
2,419,241	-		HGI48_RS11115	0.85	+2.3
2,419,257	+		HGI48_RS11115	0.85	+0.6
2,419,257	+				-0.3
2,419,257	+		HGI48_RS11115	0.85	-2.1
2,419,258	-		HGI48_RS11115	0.85	-0.9
2,419,258	-		HGI48_RS11115	0.85	-0.5
2,419,349	+		HGI48_RS11115	0.87	+0.7
2,419,349	+		HGI48_RS11115	0.87	+1.3
2,419,350	-		HGI48_RS11115	0.87	+0.0
2,419,411	+		HGI48_RS11115	0.89	+1.0
2,419,412	-		HGI48_RS11115	0.89	-0.4
2,419,421	+		HGI48_RS11115	0.89	+0.8
2,419,422	-		HGI48_RS11115	0.89	-0.1
2,419,533	-				-0.9
2,419,598	+				+0.1
2,419,598	+				-0.1
2,419,602	+				-2.1
2,419,602	+				-1.2
2,419,602	+				+0.2
2,419,603	-				+1.9
2,419,655	+				-0.7
2,419,656	-				-0.1
2,419,656	-				+0.1
2,419,736	+				+1.3
2,419,749	-				+1.1
2,419,997	+				+0.2
2,419,997	+				+1.2
2,419,997	+				-2.3
2,419,998	-				-2.3
2,419,998	-				+0.3
2,420,013	+				+0.5
2,420,013	+				-1.2
2,420,014	-				-0.7
2,420,020	+				-0.7
2,420,193	-				-0.2
2,420,193	-				-1.5
2,420,193	-				+0.3
2,420,219	+				+1.3
2,420,219	+				-0.0